prot_Ecto-sp13_S_contig12740.2272.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12740.2272.1
Unique Nameprot_Ecto-sp13_S_contig12740.2272.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length193
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12740.2272.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE)

HSP 1 Score: 344 bits (882), Expect = 3.770e-106
Identity = 180/186 (96.77%), Postives = 184/186 (98.92%), Query Frame = 0 
Query:    1 KVLANLVGPRNVRPLTEARRAYVKAHPRPELPPPPSQEQLLLDRQLMEMYNVISQKRVEREENDPRWESGRVKPDDGMRDLGELFEEAPSEDSYPEYHAKVKNIMDLNTIKTKVLDREYTSVEGLLSDVALMYSNAQVIRHEQATKDGKQLLDLAQTTVERLRRERKEGTPRKDRLREQQSASGSE 186
            KVLANLVGPRNVRPLTEARRAYVKAHPRPELPPPPSQEQLLLDRQLMEMYNVISQKRVEREENDPRWESGRVKPDDGMRDLGELFEEAPSEDSYPEYHAKVKNIMDLNTI+TKVLDREY+SVEGLLSDVALMYSNAQVIRHEQATKDGKQLL LAQ TVERLRRER+EGTPRKDRLR+QQSASGSE
Sbjct: 2091 KVLANLVGPRNVRPLTEARRAYVKAHPRPELPPPPSQEQLLLDRQLMEMYNVISQKRVEREENDPRWESGRVKPDDGMRDLGELFEEAPSEDSYPEYHAKVKNIMDLNTIRTKVLDREYSSVEGLLSDVALMYSNAQVIRHEQATKDGKQLLALAQATVERLRRERQEGTPRKDRLRQQQSASGSE 2276
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BLAST of mRNA_Ecto-sp13_S_contig12740.2272.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 6.130e-73
Identity = 128/135 (94.81%), Postives = 133/135 (98.52%), Query Frame = 0 
Query:   58 VEREENDPRWESGRVKPDDGMRDLGELFEEAPSEDSYPEYHAKVKNIMDLNTIKTKVLDREYTSVEGLLSDVALMYSNAQVIRHEQATKDGKQLLDLAQTTVERLRRERKEGTPRKDRLREQQSASGSEVSPLRR 192
            VEREENDPRWESGRVKPDDGMRDLGELFEEAPSEDSYPEYHAKVKNIMDLNT++TKVLDREY+SVEGLLSDVALMYSNAQVIRHEQATKDGKQLLDLAQTTVERLRRERKEGTPRKDRLR+QQSASGSE + LRR
Sbjct: 1694 VEREENDPRWESGRVKPDDGMRDLGELFEEAPSEDSYPEYHAKVKNIMDLNTVRTKVLDREYSSVEGLLSDVALMYSNAQVIRHEQATKDGKQLLDLAQTTVERLRRERKEGTPRKDRLRQQQSASGSECTKLRR 1828
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BLAST of mRNA_Ecto-sp13_S_contig12740.2272.1 vs. uniprot
Match: A0A1S3IY77_LINUN (protein polybromo-1-like n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3IY77_LINUN)

HSP 1 Score: 60.8 bits (146), Expect = 1.990e-7
Identity = 26/64 (40.62%), Postives = 45/64 (70.31%), Query Frame = 0 
Query:   79 RDLGELFEEAPSEDSYPEYHAKVKNIMDLNTIKTKVLDREYTSVEGLLSDVALMYSNAQVIRHE 142
            R L ++F E PS+  YP+Y+  +   +D+NTIKTK+++ +YT+ + L++D+ LM+SNA+    E
Sbjct:  262 RSLIDIFIELPSKKEYPDYYQVISEPIDMNTIKTKIMEEKYTTEQALIADLKLMFSNARHYNEE 325
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BLAST of mRNA_Ecto-sp13_S_contig12740.2272.1 vs. uniprot
Match: A0A1S3KHJ7_LINUN (protein polybromo-1 isoform X1 n=6 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3KHJ7_LINUN)

HSP 1 Score: 60.8 bits (146), Expect = 2.050e-7
Identity = 26/64 (40.62%), Postives = 45/64 (70.31%), Query Frame = 0 
Query:   79 RDLGELFEEAPSEDSYPEYHAKVKNIMDLNTIKTKVLDREYTSVEGLLSDVALMYSNAQVIRHE 142
            R L ++F E PS+  YP+Y+  +   +D+NTIKTK+++ +YT+ + L++D+ LM+SNA+    E
Sbjct:  657 RSLIDIFIELPSKKEYPDYYQVISEPIDMNTIKTKIMEEKYTTEQALIADLKLMFSNARHYNEE 720
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12740.2272.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5LHH7_9PHAE3.770e-10696.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FV42_ECTSI6.130e-7394.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1S3IY77_LINUN1.990e-740.63protein polybromo-1-like n=1 Tax=Lingula unguis Ta... [more]
A0A1S3KHJ7_LINUN2.050e-740.63protein polybromo-1 isoform X1 n=6 Tax=Lingula ung... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001487BromodomainPRINTSPR00503BROMODOMAINcoord: 128..147
score: 24.46
coord: 94..110
score: 42.58
coord: 110..128
score: 25.17
IPR001487BromodomainSMARTSM00297bromo_6coord: 35..164
e-value: 1.4E-12
score: 57.7
IPR001487BromodomainPFAMPF00439Bromodomaincoord: 80..139
e-value: 6.4E-14
score: 51.8
IPR001487BromodomainPROSITEPS50014BROMODOMAIN_2coord: 77..147
score: 13.189
IPR036427Bromodomain-like superfamilyGENE3D1.20.920.10coord: 73..185
e-value: 1.1E-18
score: 69.2
IPR036427Bromodomain-like superfamilySUPERFAMILY47370Bromodomaincoord: 81..164
IPR027180Chromatin structure-remodeling complex subunit RSC1/RSC2/RSC4PANTHERPTHR16062:SF19POLYBROMOcoord: 69..172
IPR037382Remodelling complex subunit Rsc/polybromoPANTHERPTHR16062SWI/SNF-RELATEDcoord: 69..172

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12740contigEcto-sp13_S_contig12740:1787..4605 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12740.2272.1mRNA_Ecto-sp13_S_contig12740.2272.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12740 1787..4605 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12740.2272.1 ID=prot_Ecto-sp13_S_contig12740.2272.1|Name=mRNA_Ecto-sp13_S_contig12740.2272.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
KVLANLVGPRNVRPLTEARRAYVKAHPRPELPPPPSQEQLLLDRQLMEMY
NVISQKRVEREENDPRWESGRVKPDDGMRDLGELFEEAPSEDSYPEYHAK
VKNIMDLNTIKTKVLDREYTSVEGLLSDVALMYSNAQVIRHEQATKDGKQ
LLDLAQTTVERLRRERKEGTPRKDRLREQQSASGSEVSPLRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001487Bromodomain
IPR036427Bromodomain-like_sf
IPR027180RSC1/2/4
IPR037382Rsc/polybromo