mRNA_Ecto-sp13_S_contig1274.2271.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1274.2271.1 vs. uniprot
Match: D8LFA1_ECTSI (BIG2, ArfGEF protein of the BIG/GBF family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFA1_ECTSI) HSP 1 Score: 420 bits (1079), Expect = 6.550e-132 Identity = 228/236 (96.61%), Postives = 233/236 (98.73%), Query Frame = 2
Query: 2 VVQRDALMLLSELCDWSLVDERTLSEELGXXXXXXXXXXEKESRVILESKTAALELIVSVLQTYGGPRFRALPAAATLVRGELCAALLHHCTSNVTGLVSLSLRVFVALIKGFKNHLKAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLAVVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGVSATKKDLDQDRSLQLMGMGGAVAMVSSMVKAADLEELYG 709
VVQRDALMLLSELCDWSLVDERTLSEELG XXXXXXXXEKESRVILESKTAALELIVSVLQTYGGPRFRALPAAATLVRGELCAALLHHCTSN+TGLVSLSLRVFVALIKGFKNHLKAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLA+VEMF+NYDCDLQAIDLFKRIATALAKVAKGRAGSEG SA+KKDL+QDRSLQLMGMGGAVAMVSSMVKAADLEELYG
Sbjct: 248 VVQRDALMLLSELCDWSLVDERTLSEELGGSXXXXXXXXEKESRVILESKTAALELIVSVLQTYGGPRFRALPAAATLVRGELCAALLHHCTSNITGLVSLSLRVFVALIKGFKNHLKAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLALVEMFINYDCDLQAIDLFKRIATALAKVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADLEELYG 483
BLAST of mRNA_Ecto-sp13_S_contig1274.2271.1 vs. uniprot
Match: A0A6H5KHB1_9PHAE (Sec7_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHB1_9PHAE) HSP 1 Score: 367 bits (941), Expect = 4.450e-123 Identity = 221/307 (71.99%), Postives = 229/307 (74.59%), Query Frame = 2
Query: 2 VVQRDALMLLSELCDWSLVDERTLSEELGXXXXXXXXXX---------------------EKES----------------------RV----------------------------ILESKTAALELIVSVLQTYGGPRFRALPAAATLVRGELCAALLHHCTSNVTGLVSLSLRVFVALIKGFKNHLKAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLAVVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGVSATKKDLDQDRSLQLMGMGGAVAMVSSMVKAADLEELYG 709
VVQRDALMLLSELCDWSLVDERTLSEELG XXXXXXXX + ES RV + + KTAALELIVSVLQTYGGPRFRALPAAATLVRGELCAALLHHCTSNVTG+VSLSLRVFVALIKGFK+HLKAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLA+VEMFVNYDCDLQAIDLFKRIATAL KVAKGRAGSEG SA+KKDL+QDRSLQLMGMGGAVAMVSSMVKAADLEELYG
Sbjct: 163 VVQRDALMLLSELCDWSLVDERTLSEELGGSXXXXXXXXXXXXXXERPGDEVGAEAPGARDXESDTGKQGLQNFCPPRVSPYHHRPRVFFWVGGSANTTAANAERANPTAIFSRAYVCKHKTAALELIVSVLQTYGGPRFRALPAAATLVRGELCAALLHHCTSNVTGVVSLSLRVFVALIKGFKDHLKAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLALVEMFVNYDCDLQAIDLFKRIATALVKVAKGRAGSEGASASKKDLEQDRSLQLMGMGGAVAMVSSMVKAADLEELYG 469
BLAST of mRNA_Ecto-sp13_S_contig1274.2271.1 vs. uniprot
Match: A0A7S2RK43_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RK43_9STRA) HSP 1 Score: 168 bits (425), Expect = 3.950e-48 Identity = 94/228 (41.23%), Postives = 142/228 (62.28%), Query Frame = 2
Query: 2 VVQRDALMLLSELCDWSLVDERTLSEELGXXXXXXXXXXEKESRVILESKTAALELIVSVLQTYGGPRFRALPAAATLVRGELCAALLHHCTSNVTGLVSLSLRVFVALIKGFKNHLKAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLAVVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGVSATKKDLDQDRSLQLMGMGGAVAMVSSMVKA 685
++ +DA +L LC S++ E + S + +SK +LE +++VL+ + GP F++ VR LC +LL +CTS+ T +V LSLR+FV LI FK+HLKAEIEVFI++IFLRILES++S F+HK LVLEV +C+D A+VE+F+NYDC+ + +DLF+ I +L +VAKGR E +K+ D LQ+ G+ VA+ S++++
Sbjct: 12 ILHKDAFLLFRALCKLSMLSETA-----------------RLSALTFQSKLLSLEFLLTVLE-HSGPSFKSSDKFIFAVRQYLCVSLLKNCTSSSTNVVDLSLRLFVRLIAQFKDHLKAEIEVFISNIFLRILESQNSTFEHKRLVLEVFHAICQDAQALVEIFLNYDCNFEHVDLFRSIVLSLERVAKGRIPGES-EGSKRPTDDHTRLQVKGLEALVAITHSLMRS 220
BLAST of mRNA_Ecto-sp13_S_contig1274.2271.1 vs. uniprot
Match: A0A835Z1G7_9STRA (Guanine nucleotide exchange factor in Golgi transport N-terminal-domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1G7_9STRA) HSP 1 Score: 155 bits (392), Expect = 1.100e-44 Identity = 82/136 (60.29%), Postives = 104/136 (76.47%), Query Frame = 2
Query: 161 LELIVSVLQTYGGPRFRALPAAATLVRGELCAALLHHCTSNVTGLVSLSLRVFVALIKGFKNHLKAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLAVVEMFVNYDCDLQAIDLFKRIATALAKVAK 568
LEL++ +L+ GP FR+ VR LCA LL +CTS+V +VSLSLR+FVAL + FK+HLK+E+EVF+T IFLRILESE+ + + KMLVLEV LC DP A+VE+F+NYDCDL AIDLFKRI ++AKVAK
Sbjct: 4 LELVLELLEK-SGPAFRSGEPFVDCVRTGLCAELLKNCTSSVMPVVSLSLRIFVALTRHFKDHLKSEVEVFVTRIFLRILESENRSHEQKMLVLEVFYDLCTDPRALVEIFLNYDCDLYAIDLFKRIVASMAKVAK 138
BLAST of mRNA_Ecto-sp13_S_contig1274.2271.1 vs. uniprot
Match: A0A225VZD2_9STRA (Brefeldin A-inhibited guanine nucleotide-exchange protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VZD2_9STRA) HSP 1 Score: 169 bits (429), Expect = 1.360e-44 Identity = 100/248 (40.32%), Postives = 140/248 (56.45%), Query Frame = 2
Query: 2 VVQRDALMLLSELCDWSLV----DERTLSEELGXXXXXXXXXXEKESRVILESKTAALELIVSVLQTYGGPRFRALPAAATLVRGELCAALLHHCTSNVTGLVSLSLRVFVALIKGFKNHLKAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLAVVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGV----------SATKKDLDQDRSLQLMGMGGAVAMVSSMVKAADLEEL 703
V+ +DA +L LC S+ D T + G E +SK +LEL+ +L+ GP FR +R LC +LL +CTSN T +VSLSL+VF+ L++ FK HLK E+++FITSIFLR+L+SEH++F+HK+LVLE + +C DP + E+F+NYDCD DLFK+I ALAK AKG + SA K QD +L L G+ A +S+ KAA+ E+
Sbjct: 341 VLHKDAFLLFRSLCRISMRSVADDSPTANGANGSAPGNTGNGANPEDPFAFQSKILSLELVKEILEN-AGPSFRRGERFVHAIRQYLCQSLLQNCTSNYTQIVSLSLQVFLVLLRNFKRHLKTELDIFITSIFLRLLQSEHASFEHKLLVLEALHAICDDPQTLGEIFINYDCDWNTNDLFKQIVHALAKAAKGGRSQDAAAQQYVASLSSSARIKMQQQDAALALKGLECLTATTASLKKAANFVEI 587
BLAST of mRNA_Ecto-sp13_S_contig1274.2271.1 vs. uniprot
Match: A0A067CB14_SAPPC (SEC7 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CB14_SAPPC) HSP 1 Score: 168 bits (425), Expect = 4.670e-44 Identity = 102/242 (42.15%), Postives = 146/242 (60.33%), Query Frame = 2
Query: 8 QRDALMLLSELCDWSLVDERTLSEELGXXXXXXXXXXEK----ESRVILESKTAALELIVSVLQTYGGPRFRALPAAATLVRGELCAALLHHCTSNVTGLVSLSLRVFVALIKGFKNHLKAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLAVVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGVSATKKD------LDQDRSLQLMGMGGAVAMVSSMVKAADLEEL 703
Q+DA +L LC S+ R+L+E+ + +SK +L+L++S+L + GP FR+ LVR LC +LL +CTSN T +V LSLRVFV LI FK HLKAEIEVFIT+IFL ILESE+S+ DHK+LVLEV+ +C D + E+F+NYDCD ++DLFKRI A++K+AKG+ + G +A + + + L + G+ A V+S+ K+A+ L
Sbjct: 298 QKDAFLLFRSLCRISM---RSLAEDAASGASTSMTSAGPNQGADDPFAFQSKLVSLDLLLSILN-HSGPAFRSSDKFLQLVRQYLCVSLLQNCTSNYTQIVELSLRVFVELIAHFKAHLKAEIEVFITNIFLGILESENSSLDHKLLVLEVLKQICADGSILGEIFLNYDCDWNSMDLFKRIVNAISKIAKGKKDAPGATANGANQKVRGAILPETMLVIKGLDCLTATVASLKKSANFTAL 535
BLAST of mRNA_Ecto-sp13_S_contig1274.2271.1 vs. uniprot
Match: F0XZH5_AURAN (Sec7_N domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZH5_AURAN) HSP 1 Score: 154 bits (388), Expect = 5.510e-44 Identity = 81/146 (55.48%), Postives = 109/146 (74.66%), Query Frame = 2
Query: 140 LESKTAALELIVSVLQTYGGPRFRALPAAATLVRGELCAALLHHCTSNVTGLVSLSLRVFVALIKGFKNHLKAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLAVVEMFVNYDCDLQAIDLFKRIATALAKVAKGRA 577
++SK +LEL++SVL+ + GP FR VR LC +LL +CTSNVT +V+LSLR+FVALI F++HLKAEIEVFI IFLRIL+S++S +HKMLVLEV LC D ++VE+F++YD D +++D+FK I ALA+V KG A
Sbjct: 1 MQSKVLSLELLLSVLE-HAGPSFRGGARFVGAVRQYLCVSLLKNCTSNVTHVVALSLRIFVALISKFRDHLKAEIEVFIHHIFLRILDSDNSTHEHKMLVLEVFHKLCGDTDSLVEIFLSYDADFESVDVFKHIVVALARVVKGSA 145
BLAST of mRNA_Ecto-sp13_S_contig1274.2271.1 vs. uniprot
Match: A0A1V9ZTE7_9STRA (Brefeldin A-inhibited guanine nucleotide-exchange protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZTE7_9STRA) HSP 1 Score: 167 bits (423), Expect = 8.650e-44 Identity = 104/240 (43.33%), Postives = 145/240 (60.42%), Query Frame = 2
Query: 8 QRDALMLLSELCDWSLVDERTLSEELGXXXXXXXXXXEK----ESRVILESKTAALELIVSVLQTYGGPRFRALPAAATLVRGELCAALLHHCTSNVTGLVSLSLRVFVALIKGFKNHLKAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLAVVEMFVNYDCDLQAIDLFKRIATALAKVAKGR--------AGSEGVSATKKDLDQDRSLQLMGMGGAVAMVSSMVKAAD 691
Q+DA +L LC S+ R+L+E+ + +SK +L+L++S+L + GP FR+ LVR LC +LL +CTSN T +V LSLRVFV LI FK HLKAEIEVFIT+IFL ILESE+S+ +HK+LVLEV+ +C D + E+F+NYDCD ++DLFKRI TA++K+AKG+ AGS K L + L + G+ A V+S+ K+A+
Sbjct: 289 QKDAFLLFRSLCRISM---RSLAEDAATSATSSMASTGPNQGADDPFAFQSKLVSLDLLLSILN-HSGPTFRSGDKFLQLVRQYLCVSLLQNCTSNYTQIVELSLRVFVELIAHFKAHLKAEIEVFITNIFLGILESENSSLEHKLLVLEVLKQICADGSILGEIFLNYDCDWNSMDLFKRIVTAISKIAKGKKDAPGSSNAGSSANPKLKGALLPETMLVIKGLECLTATVASLKKSAN 524
BLAST of mRNA_Ecto-sp13_S_contig1274.2271.1 vs. uniprot
Match: W2QLJ3_PHYPN (SEC7 domain-containing protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2QLJ3_PHYPN) HSP 1 Score: 166 bits (421), Expect = 1.620e-43 Identity = 111/247 (44.94%), Postives = 150/247 (60.73%), Query Frame = 2
Query: 2 VVQRDALMLLSELCDWSLV----DERTLSEELGXXXXXXXXXXEKESRVILESKTAALELIVSVLQTYGGPRFRALPAAATLVRGELCAALLHHCTSNVTGLVSLSLRVFVALIKGFKNHLKAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLAVVEMFVNYDCDLQAIDLFKRIATALAKVAKGR----------AGSEGVSATKKDLDQDRSLQLMGMGGAVAMVSSMVKAADLEE 700
V+ +DA +L LC S+ D T + XXXXXXXXXX E +SK +LEL+ +L+ GP FR +R LC +LL +CTSN T +VSLSL+VF+ L++ FK HLK E+++FITSIFLR+L+SE+++F+HK+LVLE + +C DP + E+F+NYDCD DLFK+I ALAK AKG A S SA K L QD +L L G+ A +S+ KAA+ E
Sbjct: 352 VLHKDAFLLFRSLCRISMRSVADDSPTANGXXXXXXXXXXXXXXPEDPFAFQSKILSLELVKEILEN-AGPSFRRGERFVHAIRQYLCQSLLQNCTSNYTQIVSLSLQVFLVLLRNFKRHLKTELDIFITSIFLRLLQSENASFEHKLLVLEALHAICDDPQTLGEIFINYDCDWNTNDLFKQIVHALAKAAKGGRSQDAAAQQYAASLSSSARIKMLHQDAALALKGLECLTATAASLKKAANFVE 597
BLAST of mRNA_Ecto-sp13_S_contig1274.2271.1 vs. uniprot
Match: A0A1V9ZY70_9STRA (Brefeldin A-inhibited guanine nucleotide-exchange protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZY70_9STRA) HSP 1 Score: 166 bits (420), Expect = 2.170e-43 Identity = 99/242 (40.91%), Postives = 146/242 (60.33%), Query Frame = 2
Query: 2 VVQRDALMLLSELCDWSLVDERTLSEELGXXXXXXXXXXE----KESRVILESKTAALELIVSVLQTYGGPRFRALPAAATLVRGELCAALLHHCTSNVTGLVSLSLRVFVALIKGFKNHLKAEIEVFITSIFLRILESEHSAFDHKMLVLEVISGLCRDPLAVVEMFVNYDCDLQAIDLFKRIATALAKVAKGRAGSEGVSATKKDLDQ--------DRSLQLMGMGGAVAMVSSMVKAAD 691
V Q+DA +L LC S+ R+L+E+ + +SK +L+L++++L + GP FR TL+R LC +LL +CTSN T +V LSLRVFV LI FK HLK+EIEVFIT+IFL ILESE+S+ +HK+LVLEV+ +C D + E+F+NYDCD ++DLFKRI +A++K+ KG+ S+G + +Q + L + G+ A V+S+ K+A+
Sbjct: 212 VYQKDAFLLFRSLCRISM---RSLAEDAASGSTSNLANTGLNQGADDPFAFQSKLVSLDLLLAILN-HSGPTFRNGDKFLTLIRQYLCVSLLQNCTSNYTQIVELSLRVFVELITHFKAHLKSEIEVFITNIFLGILESENSSLEHKLLVLEVLKQICADGSILGEIFLNYDCDWNSMDLFKRIVSAISKITKGKKDSQGPGGSNNSANQKIKGAIMPETMLVIKGLECLTATVASLKKSAN 449 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1274.2271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1274.2271.1 >prot_Ecto-sp13_S_contig1274.2271.1 ID=prot_Ecto-sp13_S_contig1274.2271.1|Name=mRNA_Ecto-sp13_S_contig1274.2271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=229bp MLLSELCDWSLVDERTLSEELGGGGGGGGGGGEKESRVILESKTAALELIback to top mRNA from alignment at Ecto-sp13_S_contig1274:15056..17949+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1274.2271.1 ID=mRNA_Ecto-sp13_S_contig1274.2271.1|Name=mRNA_Ecto-sp13_S_contig1274.2271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2894bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1274:15056..17949+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1274:15056..17949+ >mRNA_Ecto-sp13_S_contig1274.2271.1 ID=mRNA_Ecto-sp13_S_contig1274.2271.1|Name=mRNA_Ecto-sp13_S_contig1274.2271.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=687bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1274:15056..17949+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |