prot_Ecto-sp13_S_contig1020.225.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1020.225.1
Unique Nameprot_Ecto-sp13_S_contig1020.225.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length290
Homology
BLAST of mRNA_Ecto-sp13_S_contig1020.225.1 vs. uniprot
Match: D7FJH2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJH2_ECTSI)

HSP 1 Score: 533 bits (1374), Expect = 6.460e-190
Identity = 282/290 (97.24%), Postives = 287/290 (98.97%), Query Frame = 0
Query:    1 MGKVSGLCLFLAASALLPTSGFVAPLPIRTQTARAQQRWADGARSTTECLGRSACSALSMTAGAMGGDATVPDLEEGTDFFASLRPLTEGPIFNGLQAVFVVALAGLVDAGFSGDWQARGYLSDAAADTARTACLTAAAAHVVLTGAAGFIAKAKGDGIGAAMVTLATGPLGFLKVAAMPDQEELEAIAASKAPPLSMVINTLELSDRQTPGAVVLSTSIKAKKGREGTLRNLLESLVEETVDNQKDLVFTCTVNQDPEDRTAFFMLQRFPSPEAMSSYQNTDTFQSFTD 290
            MGKVSGLCLFLAASA+LPTSGFVAPLPIRTQ ARAQQRWADGARSTTEC GRS+CSALSMTAGAMGGDATVPDLEEGTDFFA+LRPLTEGPIFNGLQAVFVVALAGLVDAGFSGDWQARGYLSDAAADTARTACLTAAAAHVVLTGAAGFIAKAKG+GIGAAM+TLATGPLGFLKVAAMPDQEELEAIAASKAPPLSMVINTLELS RQTPGAVVLSTSIKAKKGREGTLRNLLESLVEETVDNQKDLVFTCTVNQDPEDRTAFFMLQRFPSPEAMSSYQNTDTFQSFTD
Sbjct:    1 MGKVSGLCLFLAASAVLPTSGFVAPLPIRTQAARAQQRWADGARSTTECRGRSSCSALSMTAGAMGGDATVPDLEEGTDFFAALRPLTEGPIFNGLQAVFVVALAGLVDAGFSGDWQARGYLSDAAADTARTACLTAAAAHVVLTGAAGFIAKAKGEGIGAAMITLATGPLGFLKVAAMPDQEELEAIAASKAPPLSMVINTLELSGRQTPGAVVLSTSIKAKKGREGTLRNLLESLVEETVDNQKDLVFTCTVNQDPEDRTAFFMLQRFPSPEAMSSYQNTDTFQSFTD 290          
BLAST of mRNA_Ecto-sp13_S_contig1020.225.1 vs. uniprot
Match: A0A835YX85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX85_9STRA)

HSP 1 Score: 137 bits (346), Expect = 1.620e-34
Identity = 90/214 (42.06%), Postives = 119/214 (55.61%), Query Frame = 0
Query:   84 LRPLTEGPIFNGLQAVFVVALAGLVDAGFSGDWQARGYLSDAAADTARTACLTAAAAHVVLTGAAGFIAKAKGDGIGAAMVT-LATGPLGFLKVAAMPDQ----EELEAIAASK---APPLSMVINTLELSDRQTPGAVVLSTSIKAKKGREGTLRNLLESLVEETVDNQKDLVFTCTVNQDPEDRTAFFMLQRFPSPEAMSSYQNTDTFQSFT 289
            L P+T+   +   QA + +A  GL+D GFSGDW   GY+S+      + A     A HV    AA  +A  KG     A  T L TG L  ++VA + D     + +EA A +     PP+   IN+LE+    +P  ++LSTSI+ K+G EG +RNLLE L  E        V T  VNQDPEDR AFF+LQRFPS  AMSS+Q +  F+SFT
Sbjct:   86 LHPITDTIGYRVGQAAYGIAFLGLIDGGFSGDWVKFGYISEGLEGQLKLAAYVIGAVHVASAIAAARLASGKGQNAAIAFGTGLVTGLLELVRVAGVYDDGVKAKAVEAAAVANDLHKPPMQTQINSLEMDTTNSPTGLMLSTSIRVKEGAEGPMRNLLEELSAEARGAHASTVATMAVNQDPEDRRAFFVLQRFPSMRAMSSFQTSAAFKSFT 299          
BLAST of mRNA_Ecto-sp13_S_contig1020.225.1 vs. uniprot
Match: A0A835YS87_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS87_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.930e-27
Identity = 86/221 (38.91%), Postives = 123/221 (55.66%), Query Frame = 0
Query:   80 FFASLRPLTEGPIFNGLQAVFVVALAGLVDAGF-SGDWQA-RGYLSDAAADTARTACLTAAAAHVVLTGAAGFIAKAKGDGIGAAM-VTLATGPLGFLK-VAAMPDQEELE------AIAASKAPPLSMVINTLELSDRQTPGAVVLSTSIKAKKGREGTLRNLLESLVEETVDNQKDLVFTCTVNQDPEDRTAFFMLQRFPSPEAMSSYQNTDTFQSFTD 290
            F ASL P+T+   F   Q  +    A L  +G  +G W   +G  +++       A  TA   H+V+  AA ++A   G  + AA    LATG L  L+ +  + D+E+ E      +    K PPL M I++L  +   +P  V+LSTSI A++G E  +R LLE+L  ET   Q+DLV T  VNQDP +R +FFMLQRFPS +AMS +Q +  F++FTD
Sbjct:   19 FGASLNPITDSTGFRVAQKAYAAGFATLATSGLVAGQWIVDQGIWTESTQQLVAQAATTAGGVHLVMACAAAWVASTNGADVPAAFGAGLATGALELLRSLGYLSDEEKAEQQKNRNSDEERKLPPLQMEISSLSFAS--SPTGVMLSTSICAREGCELAMRTLLETLARETGSAQRDLVGTMAVNQDPGERRSFFMLQRFPSIQAMSRHQTSAPFKAFTD 237          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1020.225.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FJH2_ECTSI6.460e-19097.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YX85_9STRA1.620e-3442.06Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YS87_9STRA2.930e-2738.91Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.70.100coord: 205..290
e-value: 2.9E-8
score: 35.3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..290
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.747
IPR011008Dimeric alpha-beta barrelSUPERFAMILY54909Dimeric alpha+beta barrelcoord: 214..289

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1020contigEcto-sp13_S_contig1020:15195..19298 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1020.225.1mRNA_Ecto-sp13_S_contig1020.225.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1020 15195..19298 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1020.225.1 ID=prot_Ecto-sp13_S_contig1020.225.1|Name=mRNA_Ecto-sp13_S_contig1020.225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=290bp
MGKVSGLCLFLAASALLPTSGFVAPLPIRTQTARAQQRWADGARSTTECL
GRSACSALSMTAGAMGGDATVPDLEEGTDFFASLRPLTEGPIFNGLQAVF
VVALAGLVDAGFSGDWQARGYLSDAAADTARTACLTAAAAHVVLTGAAGF
IAKAKGDGIGAAMVTLATGPLGFLKVAAMPDQEELEAIAASKAPPLSMVI
NTLELSDRQTPGAVVLSTSIKAKKGREGTLRNLLESLVEETVDNQKDLVF
TCTVNQDPEDRTAFFMLQRFPSPEAMSSYQNTDTFQSFTD
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011008Dimeric_a/b-barrel