Homology
BLAST of mRNA_Ecto-sp13_S_contig1020.225.1 vs. uniprot
Match:
D7FJH2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJH2_ECTSI)
HSP 1 Score: 533 bits (1374), Expect = 6.460e-190
Identity = 282/290 (97.24%), Postives = 287/290 (98.97%), Query Frame = 1
Query: 1 MGKVSGLCLFLAASALLPTSGFVAPLPIRTQTARAQQRWADGARSTTECLGRSACSALSMTAGAMGGDATVPDLEEGTDFFASLRPLTEGPIFNGLQAVFVVALAGLVDAGFSGDWQARGYLSDAAADTARTACLTAAAAHVVLTGAAGFIAKAKGDGIGAAMVTLATGPLGFLKVAAMPDQEELEAIAASKAPPLSMVINTLELSDRQTPGAVVLSTSIKAKKGREGTLRNLLESLVEETVDNQKDLVFTCTVNQDPEDRTAFFMLQRFPSPEAMSSYQNTDTFQSFTD 870
MGKVSGLCLFLAASA+LPTSGFVAPLPIRTQ ARAQQRWADGARSTTEC GRS+CSALSMTAGAMGGDATVPDLEEGTDFFA+LRPLTEGPIFNGLQAVFVVALAGLVDAGFSGDWQARGYLSDAAADTARTACLTAAAAHVVLTGAAGFIAKAKG+GIGAAM+TLATGPLGFLKVAAMPDQEELEAIAASKAPPLSMVINTLELS RQTPGAVVLSTSIKAKKGREGTLRNLLESLVEETVDNQKDLVFTCTVNQDPEDRTAFFMLQRFPSPEAMSSYQNTDTFQSFTD
Sbjct: 1 MGKVSGLCLFLAASAVLPTSGFVAPLPIRTQAARAQQRWADGARSTTECRGRSSCSALSMTAGAMGGDATVPDLEEGTDFFAALRPLTEGPIFNGLQAVFVVALAGLVDAGFSGDWQARGYLSDAAADTARTACLTAAAAHVVLTGAAGFIAKAKGEGIGAAMITLATGPLGFLKVAAMPDQEELEAIAASKAPPLSMVINTLELSGRQTPGAVVLSTSIKAKKGREGTLRNLLESLVEETVDNQKDLVFTCTVNQDPEDRTAFFMLQRFPSPEAMSSYQNTDTFQSFTD 290
BLAST of mRNA_Ecto-sp13_S_contig1020.225.1 vs. uniprot
Match:
A0A835YX85_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YX85_9STRA)
HSP 1 Score: 137 bits (346), Expect = 1.620e-34
Identity = 90/214 (42.06%), Postives = 119/214 (55.61%), Query Frame = 1
Query: 250 LRPLTEGPIFNGLQAVFVVALAGLVDAGFSGDWQARGYLSDAAADTARTACLTAAAAHVVLTGAAGFIAKAKGDGIGAAMVT-LATGPLGFLKVAAMPDQ----EELEAIAASK---APPLSMVINTLELSDRQTPGAVVLSTSIKAKKGREGTLRNLLESLVEETVDNQKDLVFTCTVNQDPEDRTAFFMLQRFPSPEAMSSYQNTDTFQSFT 867
L P+T+ + QA + +A GL+D GFSGDW GY+S+ + A A HV AA +A KG A T L TG L ++VA + D + +EA A + PP+ IN+LE+ +P ++LSTSI+ K+G EG +RNLLE L E V T VNQDPEDR AFF+LQRFPS AMSS+Q + F+SFT
Sbjct: 86 LHPITDTIGYRVGQAAYGIAFLGLIDGGFSGDWVKFGYISEGLEGQLKLAAYVIGAVHVASAIAAARLASGKGQNAAIAFGTGLVTGLLELVRVAGVYDDGVKAKAVEAAAVANDLHKPPMQTQINSLEMDTTNSPTGLMLSTSIRVKEGAEGPMRNLLEELSAEARGAHASTVATMAVNQDPEDRRAFFVLQRFPSMRAMSSFQTSAAFKSFT 299
BLAST of mRNA_Ecto-sp13_S_contig1020.225.1 vs. uniprot
Match:
A0A835YS87_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS87_9STRA)
HSP 1 Score: 117 bits (292), Expect = 2.930e-27
Identity = 86/221 (38.91%), Postives = 123/221 (55.66%), Query Frame = 1
Query: 238 FFASLRPLTEGPIFNGLQAVFVVALAGLVDAGF-SGDWQA-RGYLSDAAADTARTACLTAAAAHVVLTGAAGFIAKAKGDGIGAAM-VTLATGPLGFLK-VAAMPDQEELE------AIAASKAPPLSMVINTLELSDRQTPGAVVLSTSIKAKKGREGTLRNLLESLVEETVDNQKDLVFTCTVNQDPEDRTAFFMLQRFPSPEAMSSYQNTDTFQSFTD 870
F ASL P+T+ F Q + A L +G +G W +G +++ A TA H+V+ AA ++A G + AA LATG L L+ + + D+E+ E + K PPL M I++L + +P V+LSTSI A++G E +R LLE+L ET Q+DLV T VNQDP +R +FFMLQRFPS +AMS +Q + F++FTD
Sbjct: 19 FGASLNPITDSTGFRVAQKAYAAGFATLATSGLVAGQWIVDQGIWTESTQQLVAQAATTAGGVHLVMACAAAWVASTNGADVPAAFGAGLATGALELLRSLGYLSDEEKAEQQKNRNSDEERKLPPLQMEISSLSFAS--SPTGVMLSTSICAREGCELAMRTLLETLARETGSAQRDLVGTMAVNQDPGERRSFFMLQRFPSIQAMSRHQTSAPFKAFTD 237
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1020.225.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 3
0 1 Expect = 6.46e-190 / Id = 97.24 Expect = 1.62e-34 / Id = 42.06 Expect = 2.93e-27 / Id = 38.91 Sequence D7FJH2_ECTSI A0A835YX85_9STRA A0A835YS87_9STRA back to top
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 0 Start 1 Seed ortholog score 542.3 Seed ortholog evalue 1.3e-151 Seed eggNOG ortholog 2880.D7FJH2 Model size 870 Hectar predicted targeting category signal peptide Exons 6 EggNOG OGs 2EVYF@1,2SXV4@2759 Ec32 ortholog description Dimeric alpha-beta barrel Ec32 ortholog Ec-04_006110.1 Cds size 870 Best tax level Eukaryota Best eggNOG OG NA|NA|NA
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462514.854197-CDS-Ecto-sp13_S_contig1020:15194..15340 1681462514.854197-CDS-Ecto-sp13_S_contig1020:15194..15340 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig1020 15195..15340 + 1681462514.8678958-CDS-Ecto-sp13_S_contig1020:16033..16178 1681462514.8678958-CDS-Ecto-sp13_S_contig1020:16033..16178 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig1020 16034..16178 + 1681462514.8769746-CDS-Ecto-sp13_S_contig1020:16878..17088 1681462514.8769746-CDS-Ecto-sp13_S_contig1020:16878..17088 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig1020 16879..17088 + 1681462514.8848548-CDS-Ecto-sp13_S_contig1020:17675..17742 1681462514.8848548-CDS-Ecto-sp13_S_contig1020:17675..17742 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig1020 17676..17742 + 1681462514.8930697-CDS-Ecto-sp13_S_contig1020:18240..18440 1681462514.8930697-CDS-Ecto-sp13_S_contig1020:18240..18440 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig1020 18241..18440 + 1681462514.9013972-CDS-Ecto-sp13_S_contig1020:19196..19298 1681462514.9013972-CDS-Ecto-sp13_S_contig1020:19196..19298 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig1020 19197..19298 +
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1020.225.1
>prot_Ecto-sp13_S_contig1020.225.1 ID=prot_Ecto-sp13_S_contig1020.225.1|Name=mRNA_Ecto-sp13_S_contig1020.225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=290bp
MGKVSGLCLFLAASALLPTSGFVAPLPIRTQTARAQQRWADGARSTTECL back to top mRNA from alignment at Ecto-sp13_S_contig1020:15195..19298+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1020.225.1 ID=mRNA_Ecto-sp13_S_contig1020.225.1|Name=mRNA_Ecto-sp13_S_contig1020.225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4104bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1020:15195..19298+ (Ectocarpus species13 EcNAP12_S_4_19m)ATGGGAAAGGTGTCCGGACTGTGCTTGTTCCTAGCGGCGTCGGCTTTGCT
GCCGACCTCGGGCTTCGTGGCACCGCTGCCGATCAGGACACAAACAGCGA
GGGCCCAGCAACGGTGGGCCGACGGGGCTCGATCAACGACCGAATG GTGA
GACCTCACCTTTGTCGTTGTTGCCACCATCACGTGCGCTCACCCGATGAC
ACCTCCTATACTGTACATGTCGTGGAAACAACCCCTGTTGCCGTGGGCAA
GGCTTCGGCATGACGCGAGTACGGTCTGCGGGGTCAGTACGTCTGCTGTC
GTGACCGGTGTTAACGCTGTAAGGTCGAGCTTTGGGTATTGTTGCTGTCC
GCCTTTTTTGCGTGTGGAGGTAAAGTACGAGTGCGATCGGTGGTGTCGTG
CCCAGGATGGCCGAGGGAACTTTGGTGAGGTCGTGCACTCGCTTGTCCCT
TCGGCAAACGTTCCTCGTCGCACCGTCGACGCACGCGCTACGCCCAGACC
GCCATGCCACGCCGGTGGGACTCGCACTCTCGCCTGGTCCATGGATTGCT
GTTCTACTAAACTTGTGTGTGGTGCTGCGCATACGCCTCCTGATTCACCC
GACGCTGCCTTATGTCCCACCGCGTGCGGTGATTTTGACGTGACGTGACC
CTCTTGCGATGGGTGCCCTTTAAAGACCATCTGCCATCGGCGTCACAAAC
TCCGTTCTCACTCTGCCACAGTTTGCTGTCGGCAAGTCATGCCCTCATTC
GTCTGTGGTGGTATTTTGTCGCTCCACTGCTGCCTTCTTGTCTCTGATGG
TCTCGTTCCCAATCGCGCGTTTTTTCTCACGTGAACCAGCCTAGGACGGT
CAGCGTGCTCGGCTCTGAGCATGACTGCCGGTGCCATGGGAGGCGATGCG
ACGGTGCCAGACTTGGAAGAGGGGACTGACTTTTTCGCTTCTCTCCGACC
CTTGACGGAGGGACCGATTTTCAACGGCCTCCAG GTAGCGTAAGCGCGGT
GCCGTAGATACATCTGTATGGTCGCCAGGCGCTTGGCCGGGTTCCGCGCT
CTCCTTGCCGTCCCGCTTGCTCGTTCTGTCCTGATTTGGCTTGGGTTAGA
CGCTGCCTTTTTCGCTGTGAAGGTTGCCTCGATTTCGTCTGTGCGTGCCG
TCTCTTGTGCAGGCGTCTGTTTGTGTGGGGTGTGTCGGGGAGATCGGGGC
ATCTTGAGATTCTTGCTGACTTGAGGATTTCTTTTTGTTGTCATTGTTCG
GCCAACAAAGATAGTTAAGTGTAGCTGAGCTGGGCGAAGGGGCTGGGCTA
GCGGCTGGTATCGATCTGTCCTATCCGGCTACTGATATGAATCATTTTTT
TAATTGGTCCGCTTAGTACCAAGCTTACCCAGTGACGCAATAGGTCTGGT
GAAGTGCGCACCATGTCTCTTACGTCCTTGCTACTATAGTTGTGCCTGTC
ACACCTGTCACGCGTACACACTATGAACCCTCACGGCTTCTAAGCACGTT
GGGTGCAACTCTTGGCATTCTATCGTGCATTGCTTACTTTTGGTTCATCT
CTTGGGACGTCCCCCAGCCCTTGGTTCCTGGGAACCGCGCCTCAGTGCTC
CCCTATCTCTATCGTATCCATCATTTTTCACGGTTACGAGTTGCGCCCCT
CTTCTATTTTGTTGGTTTCGAATGCTGTTCGCAGGCAGTGTTCGTGGTCG
CTCTGGCGGGGCTCGTGGACGCGGGGTTCTCCGGAGACTGGCAGGCGAGG
GGCTACCTCAGCGACGCGGCGGCAGACACGGCGCGAACGGCATGCTTGAC
CGCGGCGGCGGCGCATGTGGTCTTGACCGGCGCGGCGGGATTCATCGCCA
AGGCGAAGGGGGATGGTATTGGTGCGGCGATGGTCACCTTGGCG GTACGT
AAGAGGGCGGGTGGACACGGGAGTGGTAGTGGCGATGCGCGCTGGGTCGG
GCGTGCTTGGGTCTGGGTTTTGCAGTTGTCCTTTCAGATGTGAGTTTGGC
GCGTTCTAAGTAGCAGGTGGTGTGTCTTTGGTTTGCCGCAACGCGCTCCC
AAATTGCGTTGGAGTTGAACTTGTGCATCTGTCTTCTTTTTCGAGGGAGA
TCGTCAATTGTGGGGCGGCCCATCTCATTTATCTAGACATCGTAGATTTT
GCGCTCTCGAGTCCCTGCGTTTCACTGACTGTGTCTTTCGAGCTTGGCCC
GTCGCCAATGAAAACACCGCAATGGCATTGCCACGCCACCTGTATCGGGG
TTCGGTGAATGGATTGACCGTGGAACCGTGGTGTCATGGCATAATCTTGT
TAACCACTTTGCGTATCGCAAGAACTATCGTAGGAAACACGAAAGTGGCT
GCCGCTCTACCCAATTCACAGATGTCGACGGACACCCATGTGTCTAGGGT
AACTCCCGACACGACGATGATGAATGTCCTTCCGTCTGTTTACTCGGCCT
CCTTGCTACATGTTTGCTGCGTGGTGTGCAGACTGGTCCGCTAGGGTTCC
TGAAGGTGGCGGCTATGCCTGACCAAGAGGAGCTTGAGGCGATCGCTG GT
GAGCACCCCGCCCCCCTCCCATCCCCGTGTTTGTAGATATCACCCGGCAC
CTCGCCACTTGCGTACGGCTCAGTACAAGAGACTGGGGCAGCGAGCGTGT
ACACTGCGTCCCACCGCAGTGATGGGATTATCGCGGTATCTTTCCGGTAT
CTTTAGCCGGATTGGATGGCAGACCATTGGTAGAGCATTCTATCTTATCT
CTCAAGTGTAGCTCAATTGGCCCCAGCAGTATGCACCGCTGAGTTGCTGC
TTGGAGGTTGCGCTCTAGAAGGTGAAACATTTTTGCGCGTCGCGAAAAGA
TTATATCCTGTACTTGATCGTGATGACTGTTTGCGGGAACGATCGCGGTG
GAAGCGAGAACACAGAACACGGTCGACTTCGACATGCATTGTCCTCGATA
CACAGGTGAGTTCACCGGATCCTCCGCTGCTGTACATCTAATGCCAACTC
TGCTTCGCCCCTGCTATACCCGATGCCTCCTCCACGCGTGACACAGCGAG
CAAGGCCCCGCCGCTGTCCATGGTGATCAACACGCTGGAGCTGTCCGACC
GCCAGACCCCGGGCGCCGTCGTGCTGAGCACTTCGATCAAGGCCAAGAAG
GGGCGCGAGGGCACCCTGCGCAACCTGCTGGAGAGCCTCGTGGAAGAAAC
TGTGGACAACCAGAAGGACCTCGTGTTCACTTGCACTGTCAACCAG GTGA
CGGATGGCTGCTGGTGTGTCTTGGTTTGCTGTTGCGTTGTGTCTCGTTCT
GCCTGTGTTTTGATTGAAATGTGTCTCGCTGAATTTTTTCTTGCTCTTGG
TTCAGCGGGCCTTGTTGCGGGGTACCTTGTTCCCCCCCCCCCCCCCCCCC
TGGTTGGGTGGGCTTTGGGGTTTTTTTTTCTTCGAGGACCGCTGTTTTTT
CGTGCCGGTGGGTGTTNNNNNNNNNNTTGTTTTGTGTTTTTTTTGTTTTT
TTTTTTTTTTTTTTTGTTTTTGTGTGTTTTTTTTTGTTTTTTTTTTTTCC
CCCCCCCCCCCTCCCTGTGTTGTGCGGGACTGTGAGTTTTTTTTTAGTCG
AGAGCCGCCGTTTTGTCGAGCCGGTTGGATTTGCGTAAGGGTCATATCGG
AGGTGCCACTTTTGCCCCACGGTGTCTTGCGTAGAATGGCGGTTGACGCG
TTCTTGAGGGTTTGTTTGATGTGTTGAACTATGATTGGGCCGCTGCAGCT
CTCTCCCCCTGACTCGTGGTACGAGAAGTCCACATGAGCAGCGAATACGC
ATTCGGTACTCGCAGTTGCCGCTCAACTATACTCAAGCGGTTGGGCTGGC
GCCTGCTGTGCCAACAGGGCATCACAGGAGCCATACACTGTGGTGCGCTT
CTTGCGTTGTGCTGTAATTTTTTTTTCGTGTAGAATCTGGCGTAGTTTCT
GTTGCCTGTAGAAGTTAACGCCCTGTTTTTGCGTGTTGTTGTGGATGATC
AGGACCCTGAGGACCGCACGGCGTTCTTCATGCTGCAGCGCTTCCCCAGC
CCCGAGGCCATGTCTAGCTACCAGAATACCGACACCTTCCAGTCCTTCAC
GGAT back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1020:15195..19298+
>mRNA_Ecto-sp13_S_contig1020.225.1 ID=mRNA_Ecto-sp13_S_contig1020.225.1|Name=mRNA_Ecto-sp13_S_contig1020.225.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=870bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1020:15195..19298+ (Ectocarpus species13 EcNAP12_S_4_19m) back to top