mRNA_Ecto-sp13_S_contig1271.2244.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1271.2244.1
Unique NamemRNA_Ecto-sp13_S_contig1271.2244.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1271.2244.1 vs. uniprot
Match: A0A6H5KLD2_9PHAE (Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLD2_9PHAE)

HSP 1 Score: 300 bits (769), Expect = 4.790e-90
Identity = 218/271 (80.44%), Postives = 227/271 (83.76%), Query Frame = 1 
Query:    1 DRSLQGPPNSPILATKAAA-AAETTTPVQRRGRAPRPGSFTRAPGPAGCSGEGSRQXXXXXXXXXXXXXXGSWNTPALAIPHQASLFQQRGDPGDPGDDQGCWADWDYPENAGARLDRGGARGEAEVDRGDRRRGGRSVDXXXXXXXXXXXXSRGPDHRDWSPCSSPTAXXXXXXXXXXXXXXXXXXXXXXED-GREVGAALFRRNPLLPAASCFSPSFASSSPVGALTASEDGQHQQNQIGSTMSLLSSGLLSGAGLGFTALPRWILRSV 807
            DRSL+GPP  PI AT+AAA AAETTTPVQ+RGRAPRPGS +R PGPAGCS E SRQXXXXXXXX      GS NTP LAIPHQASLF+Q GD GDPGDDQGCWADWDYP+NAGARLDR G RG A V RGDRR       XXXXXXXXXXXXS  PDH +WSPCSSPTAXXXXXXXXXXXXXXXXXXXXXX   GRE GAA+FRRNPLLPAASCFS SFASSSPVGAL ASED QHQQN  GSTMS LSSGLLSGAGLGFTALPRWILR +
Sbjct: 1004 DRSLEGPPTPPIRATEAAAVAAETTTPVQQRGRAPRPGSLSRTPGPAGCSREASRQXXXXXXXX------GSMNTPVLAIPHQASLFRQGGDTGDPGDDQGCWADWDYPDNAGARLDRSGGRGGAGVGRGDRRXXXXXXXXXXXXXXXXXXXSWEPDHCEWSPCSSPTAXXXXXXXXXXXXXXXXXXXXXXXXXGREAGAAVFRRNPLLPAASCFSRSFASSSPVGALAASEDEQHQQNHRGSTMSPLSSGLLSGAGLGFTALPRWILRRL 1268
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BLAST of mRNA_Ecto-sp13_S_contig1271.2244.1 vs. uniprot
Match: D8LR57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR57_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 9.880e-56
Identity = 125/170 (73.53%), Postives = 130/170 (76.47%), Query Frame = 1 
Query:    1 DRSLQGPPNSPILATKAAAAA--ETTTPVQRRGRAPRPGSFTRAPGPAGCSGEGSRQXXXXXXXXXXXXXXGSWNTPALAIPHQASLFQQRGDPGDPGDDQGCWADWDYPENAGARLDRGGARGEAEVDRGDRRRGGRSVDXXXXXXXXXXXXSRGPDHRDWSPCSSPTA 504
            DRSLQGPP SPI AT+AAAAA  ETT PVQ+RGR PRPGS TR PGPAGC GE SRQ  XXX         GSWNTPA+A PHQASLF+  GD GDPGDDQGCWADWDYP+NAGARLDRGG RG A V   D         XXXXXXXXXXXXSRGPDHRDWSPCSSPTA
Sbjct:  297 DRSLQGPPTSPIRATEAAAAAAAETTAPVQQRGRPPRPGSLTRTPGPAGCFGEASRQQPXXXP--------GSWNTPAVAAPHQASLFRLGGDTGDPGDDQGCWADWDYPDNAGARLDRGGGRGGAGVGGRDXXXXXXXXXXXXXXXXXXXXXSRGPDHRDWSPCSSPTA 458
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1271.2244.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLD2_9PHAE4.790e-9080.44Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D8LR57_ECTSI9.880e-5673.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1271contigEcto-sp13_S_contig1271:8449..10143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size864
Hectar predicted targeting categoryother localisation
Exons2
Cds size840
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462679.1961029-CDS-Ecto-sp13_S_contig1271:8448..92731681462679.1961029-CDS-Ecto-sp13_S_contig1271:8448..9273Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1271 8449..9273 +
1681462679.2071745-CDS-Ecto-sp13_S_contig1271:10106..101211681462679.2071745-CDS-Ecto-sp13_S_contig1271:10106..10121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1271 10107..10121 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462679.2169962-UTR-Ecto-sp13_S_contig1271:10121..101431681462679.2169962-UTR-Ecto-sp13_S_contig1271:10121..10143Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1271 10122..10143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1271.2244.1prot_Ecto-sp13_S_contig1271.2244.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1271 8449..10121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1271.2244.1

>prot_Ecto-sp13_S_contig1271.2244.1 ID=prot_Ecto-sp13_S_contig1271.2244.1|Name=mRNA_Ecto-sp13_S_contig1271.2244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=280bp
DRSLQGPPNSPILATKAAAAAETTTPVQRRGRAPRPGSFTRAPGPAGCSG
EGSRQQPPPPPPPPPPPPPGSWNTPALAIPHQASLFQQRGDPGDPGDDQG
CWADWDYPENAGARLDRGGARGEAEVDRGDRRRGGRSVDDDGDDDEEAAW
WSRGPDHRDWSPCSSPTAAAAAAPPPSSSVPTGGGRGGGGEDGREVGAAL
FRRNPLLPAASCFSPSFASSSPVGALTASEDGQHQQNQIGSTMSLLSSGL
LSGAGLGFTALPRWILRSVRTIGTQTPRR*
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mRNA from alignment at Ecto-sp13_S_contig1271:8449..10143+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1271.2244.1 ID=mRNA_Ecto-sp13_S_contig1271.2244.1|Name=mRNA_Ecto-sp13_S_contig1271.2244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1695bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1271:8449..10143+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCGATCGCTTCAGGGTCCCCCTAACTCGCCAATCCTGGCCACCAAGGC
AGCAGCAGCAGCGGAAACAACTACTCCTGTGCAACGGCGAGGGCGTGCTC
CTCGTCCTGGCAGCTTCACGCGGGCGCCTGGTCCCGCAGGTTGTTCCGGG
GAAGGATCTCGGCAACAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCC
ACCGCCTGGGAGCTGGAACACCCCAGCGCTAGCAATTCCTCATCAGGCTT
CTTTGTTCCAGCAGAGGGGTGACCCCGGCGATCCGGGCGACGACCAGGGG
TGCTGGGCTGACTGGGACTACCCCGAAAACGCCGGTGCTCGACTCGATAG
GGGCGGCGCGAGGGGGGAGGCGGAAGTGGACAGGGGGGACCGCCGCCGTG
GGGGGCGGAGCGTGGACGACGACGGCGATGACGACGAGGAGGCTGCGTGG
TGGTCTCGGGGGCCCGATCATCGCGACTGGTCTCCTTGCTCCTCTCCGAC
CGCCGCCGCCGCCGCCGCACCACCGCCTTCGTCGTCGGTACCGACCGGAG
GAGGTAGAGGTGGGGGCGGGGAGGACGGACGGGAAGTAGGTGCTGCGCTG
TTTCGTCGTAACCCTCTCCTACCCGCTGCTTCTTGCTTCTCTCCTTCGTT
CGCTTCCTCTTCGCCGGTCGGCGCCCTTACCGCTTCTGAGGATGGGCAGC
ACCAACAGAATCAAATAGGGAGCACGATGTCGCTGCTGTCGAGCGGGCTG
TTATCCGGAGCGGGCCTCGGGTTCACCGCACTGCCCAGGTGGATCCTGCG
GTCCGTGCGGACGATTGGAACGCAGGTGGGCTGTTGTTGCTCCTGCAAGC
GTAACGCGTGGGTCGCGTCTTCATGTCTGGGCGAGACCCTTGGCGTGATT
GTGCTTTCCTGCCATTCAAGTACGCATGGTTGTGCTTCCGGTGATTTGAC
GACGAATGTGGCGGACTTGGGACGAGGGTGGGAGGACAGAAAGACCCCCA
GACCTTTCGGTTGGCATGTCTAGGTGGCGAGGCGCGTCTACAGGGAGAAG
AGTTCCGCCGTAGCATTAAACGCGCACAGCATCGTGGTGCTAGTGGGTGT
CCTCTTCTTGTTGCTATCTCCGCCGAGAACAGCACTCGAGCCTAACCGGC
CAGAGGAATCCCTTCAAGTCCTGATGTTGTCGAAAATTTCGAGGAAAATG
TAGCGAAGAGACCGAAAAGTTTTAGTGTTGGCACGGAAACAACACGATAA
AACCGCGGGTACCTTTATTTTTCTCCCCCACCTGCCGGCACCTTTTGTCC
CTCTCTCTCTCTCCCTCTCTCTCTCTCCGAGAACACAAGACCGCACTATC
CCCAGGCAACCGAACGAGGCAACCTATACTACCAATCTGCCGCTACAGGG
TCGCGGTCTTGAGCACGGCAACCGCTCCCTCCATCACTTAGTTGTAGGCA
ACTTGTTTTCTCTCAACGGGTGATTGGACTTTCTTTGTACATTCATACAT
TCTGTTGGGAGGCGTTGGTAAACGAATGTACTGTTAGGCCATATGTTAAC
ACACCCGTAACTTTTCTCTCAAGAAGCCCCCCCTCCCTCCTCCGTCATGC
CTGTCGCCATTGGGTTCGCCCCTATTCGCCGGGGTGATGGACCGTCCATG
TCTTACAGACGCCTCGCAGGTGATCACGGAAGCGACAGGGCGCGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1271:8449..10143+

>mRNA_Ecto-sp13_S_contig1271.2244.1 ID=mRNA_Ecto-sp13_S_contig1271.2244.1|Name=mRNA_Ecto-sp13_S_contig1271.2244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=840bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1271:8449..10143+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACCGATCGCTTCAGGGTCCCCCTAACTCGCCAATCCTGGCCACCAAGGC
AGCAGCAGCAGCGGAAACAACTACTCCTGTGCAACGGCGAGGGCGTGCTC
CTCGTCCTGGCAGCTTCACGCGGGCGCCTGGTCCCGCAGGTTGTTCCGGG
GAAGGATCTCGGCAACAGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCTCC
ACCGCCTGGGAGCTGGAACACCCCAGCGCTAGCAATTCCTCATCAGGCTT
CTTTGTTCCAGCAGAGGGGTGACCCCGGCGATCCGGGCGACGACCAGGGG
TGCTGGGCTGACTGGGACTACCCCGAAAACGCCGGTGCTCGACTCGATAG
GGGCGGCGCGAGGGGGGAGGCGGAAGTGGACAGGGGGGACCGCCGCCGTG
GGGGGCGGAGCGTGGACGACGACGGCGATGACGACGAGGAGGCTGCGTGG
TGGTCTCGGGGGCCCGATCATCGCGACTGGTCTCCTTGCTCCTCTCCGAC
CGCCGCCGCCGCCGCCGCACCACCGCCTTCGTCGTCGGTACCGACCGGAG
GAGGTAGAGGTGGGGGCGGGGAGGACGGACGGGAAGTAGGTGCTGCGCTG
TTTCGTCGTAACCCTCTCCTACCCGCTGCTTCTTGCTTCTCTCCTTCGTT
CGCTTCCTCTTCGCCGGTCGGCGCCCTTACCGCTTCTGAGGATGGGCAGC
ACCAACAGAATCAAATAGGGAGCACGATGTCGCTGCTGTCGAGCGGGCTG
TTATCCGGAGCGGGCCTCGGGTTCACCGCACTGCCCAGGTGGATCCTGCG
GTCCGTGCGGACGATTGGAACGCAGACGCCTCGCAGGTGA
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