prot_Ecto-sp13_S_contig1271.2244.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1271.2244.1
Unique Nameprot_Ecto-sp13_S_contig1271.2244.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length280
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1271.2244.1 vs. uniprot
Match: A0A6H5KLD2_9PHAE (Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLD2_9PHAE)

HSP 1 Score: 300 bits (768), Expect = 5.100e-90
Identity = 218/269 (81.04%), Postives = 226/269 (84.01%), Query Frame = 0 
Query:    1 DRSLQGPPNSPILATKAAA-AAETTTPVQRRGRAPRPGSFTRAPGPAGCSGEGSRQXXXXXXXXXXXXXXGSWNTPALAIPHQASLFQQRGDPGDPGDDQGCWADWDYPENAGARLDRGGARGEAEVDRGDRRRGGRSVDXXXXXXXXXXXXSRGPDHRDWSPCSSPTAXXXXXXXXXXXXXXXXXXXXXXED-GREVGAALFRRNPLLPAASCFSPSFASSSPVGALTASEDGQHQQNQIGSTMSLLSSGLLSGAGLGFTALPRWILR 267
            DRSL+GPP  PI AT+AAA AAETTTPVQ+RGRAPRPGS +R PGPAGCS E SRQXXXXXXXX      GS NTP LAIPHQASLF+Q GD GDPGDDQGCWADWDYP+NAGARLDR G RG A V RGDRR       XXXXXXXXXXXXS  PDH +WSPCSSPTAXXXXXXXXXXXXXXXXXXXXXX   GRE GAA+FRRNPLLPAASCFS SFASSSPVGAL ASED QHQQN  GSTMS LSSGLLSGAGLGFTALPRWILR
Sbjct: 1004 DRSLEGPPTPPIRATEAAAVAAETTTPVQQRGRAPRPGSLSRTPGPAGCSREASRQXXXXXXXX------GSMNTPVLAIPHQASLFRQGGDTGDPGDDQGCWADWDYPDNAGARLDRSGGRGGAGVGRGDRRXXXXXXXXXXXXXXXXXXXSWEPDHCEWSPCSSPTAXXXXXXXXXXXXXXXXXXXXXXXXXGREAGAAVFRRNPLLPAASCFSRSFASSSPVGALAASEDEQHQQNHRGSTMSPLSSGLLSGAGLGFTALPRWILR 1266
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1271.2244.1 vs. uniprot
Match: D8LR57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR57_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 7.840e-56
Identity = 125/170 (73.53%), Postives = 130/170 (76.47%), Query Frame = 0 
Query:    1 DRSLQGPPNSPILATKAAAAA--ETTTPVQRRGRAPRPGSFTRAPGPAGCSGEGSRQXXXXXXXXXXXXXXGSWNTPALAIPHQASLFQQRGDPGDPGDDQGCWADWDYPENAGARLDRGGARGEAEVDRGDRRRGGRSVDXXXXXXXXXXXXSRGPDHRDWSPCSSPTA 168
            DRSLQGPP SPI AT+AAAAA  ETT PVQ+RGR PRPGS TR PGPAGC GE SRQ  XXX         GSWNTPA+A PHQASLF+  GD GDPGDDQGCWADWDYP+NAGARLDRGG RG A V   D         XXXXXXXXXXXXSRGPDHRDWSPCSSPTA
Sbjct:  297 DRSLQGPPTSPIRATEAAAAAAAETTAPVQQRGRPPRPGSLTRTPGPAGCFGEASRQQPXXXP--------GSWNTPAVAAPHQASLFRLGGDTGDPGDDQGCWADWDYPDNAGARLDRGGGRGGAGVGGRDXXXXXXXXXXXXXXXXXXXXXSRGPDHRDWSPCSSPTA 458
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1271.2244.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLD2_9PHAE5.100e-9081.04Protein CLP1 homolog n=1 Tax=Ectocarpus sp. CCAP 1... [more]
D8LR57_ECTSI7.840e-5673.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1271contigEcto-sp13_S_contig1271:8449..10121 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1271.2244.1mRNA_Ecto-sp13_S_contig1271.2244.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1271 8449..10143 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1271.2244.1 ID=prot_Ecto-sp13_S_contig1271.2244.1|Name=mRNA_Ecto-sp13_S_contig1271.2244.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=280bp
DRSLQGPPNSPILATKAAAAAETTTPVQRRGRAPRPGSFTRAPGPAGCSG
EGSRQQPPPPPPPPPPPPPGSWNTPALAIPHQASLFQQRGDPGDPGDDQG
CWADWDYPENAGARLDRGGARGEAEVDRGDRRRGGRSVDDDGDDDEEAAW
WSRGPDHRDWSPCSSPTAAAAAAPPPSSSVPTGGGRGGGGEDGREVGAAL
FRRNPLLPAASCFSPSFASSSPVGALTASEDGQHQQNQIGSTMSLLSSGL
LSGAGLGFTALPRWILRSVRTIGTQTPRR*
back to top