mRNA_Ecto-sp13_S_contig1270.2233.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1270.2233.1
Unique NamemRNA_Ecto-sp13_S_contig1270.2233.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1270.2233.1 vs. uniprot
Match: D8LHX9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX9_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.390e-33
Identity = 71/83 (85.54%), Postives = 71/83 (85.54%), Query Frame = 2 
Query:   41 MNDRLFDFRDRLCFYSNLGYVEALNEWQYEIRKICVKAEGFVHHQQRRDPHPRXXXXXXXXYSSEDKHSSSGKQPTLVEVRSK 289
            MNDRLFDFRDRLCFYSNLGYVEALNEWQYEIRKICVKAEGFVHHQQRRDP PR XXXXXXX         S KQPTLVEVRSK
Sbjct:    1 MNDRLFDFRDRLCFYSNLGYVEALNEWQYEIRKICVKAEGFVHHQQRRDPQPRHXXXXXXXXXXXXXXXXS-KQPTLVEVRSK 82
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BLAST of mRNA_Ecto-sp13_S_contig1270.2233.1 vs. uniprot
Match: A0A6H5L6T9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T9_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 7.430e-22
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 2 
Query:    2 VAALTNELARLQDMNDRLFDFRDRLCFYSNLGYVEALNEWQYEIRK 139
            VA LTNELARLQDMN+RLFDFRDRLCFYSNLGYVEALNEWQYEIRK
Sbjct:   56 VATLTNELARLQDMNNRLFDFRDRLCFYSNLGYVEALNEWQYEIRK 101
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1270.2233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHX9_ECTSI1.390e-3385.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6T9_9PHAE7.430e-2295.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1270contigEcto-sp13_S_contig1270:94..1341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size765
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_000890.1
Cds size252
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462678.4702864-UTR-Ecto-sp13_S_contig1270:93..5661681462678.4702864-UTR-Ecto-sp13_S_contig1270:93..566Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1270 94..566 -
1681462678.5064008-UTR-Ecto-sp13_S_contig1270:1301..13411681462678.5064008-UTR-Ecto-sp13_S_contig1270:1301..1341Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1270 1302..1341 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462678.479785-CDS-Ecto-sp13_S_contig1270:566..7201681462678.479785-CDS-Ecto-sp13_S_contig1270:566..720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1270 567..720 -
1681462678.4926345-CDS-Ecto-sp13_S_contig1270:1203..13011681462678.4926345-CDS-Ecto-sp13_S_contig1270:1203..1301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1270 1204..1301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1270.2233.1prot_Ecto-sp13_S_contig1270.2233.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1270 567..1301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1270.2233.1

>prot_Ecto-sp13_S_contig1270.2233.1 ID=prot_Ecto-sp13_S_contig1270.2233.1|Name=mRNA_Ecto-sp13_S_contig1270.2233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=84bp
MNDRLFDFRDRLCFYSNLGYVEALNEWQYEIRKICVKAEGFVHHQQRRDP
HPRHRHRHRHHYSSEDKHSSSGKQPTLVEVRSK*
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mRNA from alignment at Ecto-sp13_S_contig1270:94..1341-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1270.2233.1 ID=mRNA_Ecto-sp13_S_contig1270.2233.1|Name=mRNA_Ecto-sp13_S_contig1270.2233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1248bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1270:94..1341- (Ectocarpus species13 EcNAP12_S_4_19m)
AGTAGCTGCCCTAACCAACGAGCTGGCTAGACTGCAAGACATGAACGACC
GGCTGTTCGACTTCAGGGACCGCCTGTGCTTCTACTCGAACCTCGGCTAC
GTGGAAGCTCTCAACGAGTGGCAATACGAGATTCGAAAGTAAGGGTAGCC
GGGCGTCTGTTTCGTTTTCATCATTATGGTGGCCTGAGATGATCGACTGT
ATGTACAGGTAGACAACAAGTACAGTGCGTGCTGGTCATCGTTGGATGCA
TCATGAACTATCTGTCGTGTGCCTTTTGGTAAGCAGCTGTGGTTTGATCT
TCCCTCTCTGGTCCGGCCAATCAACCGGCGGCAGGTGAACGCGTTCCATG
ATGGAGTGCTATAGTGTTGCTTTCGGGGTGTTGCCGGTTCTTTCCGTATC
ATCGATCGGTCTCCGAATTTTTCAGGAGTTCTCCAAGAACCAGGTCGAGC
GCGGCGCAAATTCGGCGGGATAACTCTCGCCCGCACGTGACGCGGGATCC
AATCTTTCCAACTCTAAATACCAACATTCCTTCCGATGCTCCTGTTGTTG
CATACATACATGCGCACATGTCCAAATCATCACAACCGAACCCCACGCCC
AATCGAACTCCTTTCTTTCAGGATCTGCGTCAAAGCCGAAGGCTTCGTGC
ACCATCAGCAGCGGCGCGACCCCCACCCCCGCCACCGCCACCGCCACCGC
CACCACTATTCTTCAGAGGACAAGCACAGCAGCAGCGGCAAGCAGCCAAC
CCTCGTGGAAGTGAGGTCGAAGTGACGACGCATGCGCCGTCACAACGAAC
GACCGTCGGCCGGCCAGACGTGTTGCAACCGCTGTCAGCCCCGGCCATCA
TTTTCCGTGATGCCGGTGAAGGTTACCGTTTGTTGACACTCAACAGCAGC
GCGCTGCTTCTTCTCTTTTTTTCCCCGTCAATGGTTGGTCGGGCAGCGAA
CGGTTTGATGAAATGACGCCAGAACTGCCCGCCTTGGCCCGCCGTTGTTT
TTTTTTTCGTTGTTTTTGCTAATGAGAGTTGGCCGTGTATTTGTTTGTGT
GTGAAACATCCCGCTCGCGCTGGACGCCAGTTTTTTGCACCTTTCGGGTG
GGTGTGTTTTTCCGGAGGCATCATCAGCCGGGTCACACGGAGGAGAGGCG
CATGCTTTTTCGAGAGCTGCTACTTATAACATTTGTAGTGTACCATGTTT
TTTTTCGGGCGCAGTACTGCGGTGGCAGTGACCTGCTAAATATAGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1270:94..1341-

>mRNA_Ecto-sp13_S_contig1270.2233.1 ID=mRNA_Ecto-sp13_S_contig1270.2233.1|Name=mRNA_Ecto-sp13_S_contig1270.2233.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=252bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1270:94..1341- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAACGACCGGCTGTTCGACTTCAGGGACCGCCTGTGCTTCTACTCGAA
CCTCGGCTACGTGGAAGCTCTCAACGAGTGGCAATACGAGATTCGAAAGA
TCTGCGTCAAAGCCGAAGGCTTCGTGCACCATCAGCAGCGGCGCGACCCC
CACCCCCGCCACCGCCACCGCCACCGCCACCACTATTCTTCAGAGGACAA
GCACAGCAGCAGCGGCAAGCAGCCAACCCTCGTGGAAGTGAGGTCGAAGT
GA
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