mRNA_Ecto-sp13_S_contig12679.2215.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12679.2215.1
Unique NamemRNA_Ecto-sp13_S_contig12679.2215.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12679.2215.1 vs. uniprot
Match: A0A6H5JNJ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ9_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 8.710e-43
Identity = 91/115 (79.13%), Postives = 93/115 (80.87%), Query Frame = 2 
Query:    2 AGRKRARDGKSLQFGAGLMARGGGGAPRAVPATLGAMMDLASKDPAEFTRIIEENPRLLEQLERKAASTXXXXXXXVRLPXXXXXXXXAGAAEDPRRALDPRRADPRRDPRRQRK 346
            AGRKRARD KSL FGAGLMAR GGGAPR +PATLGAMMDLASKDPAEFTRIIEENPRLLEQLERKAAST       VRLP         G + DPRRALDPRRADPRRDPRRQRK
Sbjct: 2306 AGRKRARDVKSLPFGAGLMARVGGGAPRVLPATLGAMMDLASKDPAEFTRIIEENPRLLEQLERKAASTTTSGSSGVRLPPSSRQGGTGGPSGDPRRALDPRRADPRRDPRRQRK 2420
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BLAST of mRNA_Ecto-sp13_S_contig12679.2215.1 vs. uniprot
Match: D8LBI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBI8_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 1.750e-16
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 2 
Query:   11 KRARDGKSLQFGAGLMARGGGGAPRAVPATLGAMMDLASKDPAEFTRIIEENPR 172
            KR RDGKSL FGAGLMARGGGGAPR +PATLGAMMDLASKDPAEFTR + +N R
Sbjct: 2184 KRPRDGKSLPFGAGLMARGGGGAPRVLPATLGAMMDLASKDPAEFTREMNDNKR 2237
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12679.2215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JNJ9_9PHAE8.710e-4379.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBI8_ECTSI1.750e-1683.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12679contigEcto-sp13_S_contig12679:924..2027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size538
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.1000488-UTR-Ecto-sp13_S_contig12679:923..11121681462677.1000488-UTR-Ecto-sp13_S_contig12679:923..1112Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12679 924..1112 -
1681462677.1298778-UTR-Ecto-sp13_S_contig12679:1972..20271681462677.1298778-UTR-Ecto-sp13_S_contig12679:1972..2027Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12679 1973..2027 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462677.1114674-CDS-Ecto-sp13_S_contig12679:1112..13101681462677.1114674-CDS-Ecto-sp13_S_contig12679:1112..1310Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12679 1113..1310 -
1681462677.1204636-CDS-Ecto-sp13_S_contig12679:1876..19721681462677.1204636-CDS-Ecto-sp13_S_contig12679:1876..1972Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12679 1877..1972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12679.2215.1prot_Ecto-sp13_S_contig12679.2215.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12679 1113..1972 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12679.2215.1

>prot_Ecto-sp13_S_contig12679.2215.1 ID=prot_Ecto-sp13_S_contig12679.2215.1|Name=mRNA_Ecto-sp13_S_contig12679.2215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
MARGGGGAPRAVPATLGAMMDLASKDPAEFTRIIEENPRLLEQLERKAAS
TTTSGSSGVRLPPSSRQGGAAGAAEDPRRALDPRRADPRRDPRRQRK*
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mRNA from alignment at Ecto-sp13_S_contig12679:924..2027-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12679.2215.1 ID=mRNA_Ecto-sp13_S_contig12679.2215.1|Name=mRNA_Ecto-sp13_S_contig12679.2215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1104bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12679:924..2027- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGGTCGCAAGCGAGCGAGGGACGGGAAGTCGCTGCAGTTCGGGGCGG
GTCTCATGGCGCGGGGGGGAGGAGGGGCGCCTAGGGCGGTGCCGGCGACG
CTAGGGGCGATGATGGACCTGGCGTCCAAGGACCCGGCCGAGTTCACCAG
GGTGAGTCGGGAGGCGGGGGGGGGTGCTGTCGAAGAGGAAGGGGGGGATA
CGTGGGTCTCGCGGTCTGCTGGTTGCTTGGGATGTGATGGAGTTTCATCA
CGTAAACTCGCATGCTTGGTGGGCCGGGACGTGTTCGTACGCCCAGGAGA
GCGTGGTTAAGTGAATTGCCTTCCTCACACTCGAATCGACGGAAACAAAA
CCCCAGCTGGCAGCTGGAGAGGTCGCACGGAACACGGAAATATTCGATTA
TGGTCTAGTTGTTGTGTGCGGGGATGGTCTGGCGAAGCGGCCCCTGTGAT
TGTTTTCCCGTATTGGATATTTGGCCTGGCCCCTCTATGTTCCAGGAGAT
GAATGACCACAAGAGAGGCGGGTGAGGGAGACAGACAGGATAATTTCATA
GCTGTGACCACTTCGATGTAAAGCACTAGCACCGAGTCATTGAGAGCGTC
CACAATTACGTGATCTATACATATCATAGAAGGCGACGCTAGAAATATAA
ACGAAGCAGTGAACGCACCCAACCCAGGAGAAAGCGCCCCCCCACCTGCC
GCGTCTCTCTTCCCCAGATTATCGAAGAGAACCCCCGGCTCCTGGAACAG
CTGGAAAGGAAAGCAGCATCCACCACCACTAGCGGCAGCAGCGGTGTAAG
GCTGCCGCCGTCGTCCAGACAAGGGGGCGCCGCCGGCGCGGCGGAGGACC
CCCGGCGTGCCCTAGACCCCCGGCGGGCCGACCCCCGGCGTGATCCTCGG
CGCCAACGGAAGTGATGGCGGTGGGGGGCGGGTAAGAGGTATAGGTTGTC
GTGTCTCTTCTCCGTGTGGCCGGTCGTGGACTTCTCGCGCACGCGAGCAG
TTTTGAACGATAGCACGACGAAAGAAAGCAGAAGGTGCTCGTCCTCTCTT
TTCACGCCTCGTGCTGTGACGTGTCTGCCGGTTGAAGAGCGTTGTCATCG
GCCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12679:924..2027-

>mRNA_Ecto-sp13_S_contig12679.2215.1 ID=mRNA_Ecto-sp13_S_contig12679.2215.1|Name=mRNA_Ecto-sp13_S_contig12679.2215.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12679:924..2027- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCGGGGGGGAGGAGGGGCGCCTAGGGCGGTGCCGGCGACGCTAGG
GGCGATGATGGACCTGGCGTCCAAGGACCCGGCCGAGTTCACCAGGATTA
TCGAAGAGAACCCCCGGCTCCTGGAACAGCTGGAAAGGAAAGCAGCATCC
ACCACCACTAGCGGCAGCAGCGGTGTAAGGCTGCCGCCGTCGTCCAGACA
AGGGGGCGCCGCCGGCGCGGCGGAGGACCCCCGGCGTGCCCTAGACCCCC
GGCGGGCCGACCCCCGGCGTGATCCTCGGCGCCAACGGAAGTGA
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