prot_Ecto-sp13_S_contig102.221.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig102.221.1
Unique Nameprot_Ecto-sp13_S_contig102.221.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length644
Homology
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE)

HSP 1 Score: 838 bits (2166), Expect = 1.310e-299
Identity = 489/604 (80.96%), Postives = 504/604 (83.44%), Query Frame = 0
Query:   42 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLDFGIEDEDLVRGKPFDPDLRSPPLSPTATMSTXXXXXXXXXXXXXXREPATRDSKELKRGEAAGSSQTGDELNFRSKSFDPLQALQHKTLRPPFPKEPALDNLAKFYRMLPKPHTRTGPAATAGGATXXXXXXXXXXXXGAADSRSGVDYFGSGRRGGGAGVVPPPDAAGSPHGSQQARETWPASVGGRSRHGPLVRSAADMERADKDMALRRRLTEGALAGDAEADPADSAEERFNPVKRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKYTAFVPARGPRPPQKLPPPKPAEEEGPIDGDAAPASKVTGFEGLDGSGSGEGGYAXXXXXXXSRHARGPEGLGKVRG----AGAADGDNFVGVSPADGSEPTGATAWTVTGTGGFEGGRIRGEGGGNXGGGSERIDPRDPRMDVAPAAAASGVATKEVCSNERREGGAREATRTKLLPQEWGVTHEREENDPTRRTPDSEEQRPGPPLPPAGRQGGDINRGGGGGVGVSGEIPAA 641
            MGEPRTSLWSRLVVFYSVNKRDQLN KVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLL+FG+EDEDL RGKP DPD RS PLSP  TMST              RE A R++KEL RGE AGSS TGDELNFRSK FDPLQAL HKTLRPPFP+EPALDNLAKFYRMLPKP T TGPAATAG   XXXXXXXXXXXX  ADSRSGV YFGSG RGGGAGVVPPP AAGSP GS QAR+TWPAS GGR RHG LVRSAADMERADKDMALRRRL EGALAGDAE DPADSA  RFNPVKRI QEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRG CTGLIRAFDRHMNLLLVDVRE YTAFVPARGPRPP KLPPPKPAEE+ PID DAA ASKVTGFEGL           XXXXXXX     GPEGLGKV      AGAAD D  VGVSPADGSEPTGATAWTVTGTGGF+GGRI GE GG+ GG SERI PRDPRMDVA AAAASG AT+E CS+E REGGAR ATR KLLPQEWGV  EREENDPT RTPD+EE+RP PPL  AGR GGD+NRGGGG  G +GEIPAA
Sbjct:    1 MGEPRTSLWSRLVVFYSVNKRDQLNPKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPDRRSSPLSPIGTMSTTVAGAGSAGTGVAGREAAARENKELGRGEGAGSSPTGDELNFRSKFFDPLQALLHKTLRPPFPREPALDNLAKFYRMLPKPPTSTGPAATAGXXXXXXXXXXXXXXXXXADSRSGVSYFGSGHRGGGAGVVPPPAAAGSPRGSHQARKTWPASGGGRGRHGLLVRSAADMERADKDMALRRRLAEGALAGDAETDPADSAG-RFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLPPPKPAEED-PIDRDAAAASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXGPEGLGKVTAGAGXAGAADDDKSVGVSPADGSEPTGATAWTVTGTGGFKGGRISGEDGGDGGGSSERIYPRDPRMDVAAAAAASGAATEEACSDETREGGARTATRMKLLPQEWGVPREREENDPTGRTPDAEEKRPRPPLSTAGRHGGDVNRGGGGEGGATGEIPAA 602          
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI)

HSP 1 Score: 826 bits (2133), Expect = 1.460e-294
Identity = 483/604 (79.97%), Postives = 503/604 (83.28%), Query Frame = 0
Query:   42 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLDFGIEDEDLVRGKPFDPDLRSPPLSPTATMSTXXXXXXXXXXXXXXREPATRDSKELKRGEAAGSSQTGDELNFRSKSFDPLQALQHKTLRPPFPKEPALDNLAKFYRMLPKPHTRTGPAATAGGATXXXXXXXXXXXXGAADSRSGVDYFGSGRRGGGAGVVPPPDAAGSPHGSQQARETWPASVGGRSRHGPLVRSAADMERADKDMALRRRLTEGALAGDAEADPADSAEERFNPVKRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKYTAFVPARGPRPPQKLPPPKPAEEEGPIDGDAAPASKVTGFEGLDGSGSGEGGYAXXXXXXXSRHARGPEGLGKVRGAG----AADGDNFVGVSPADGSEPTGATAWTVTGTGGFEGGRIRGEGGGNXGGGSERIDPRDPRMDVAPAAAASGVATKEVCSNERREGGAREATRTKLLPQEWGVTHEREENDPTRRTPDSEEQRPGPPLPPAGRQGGDINRGGGGGVGVSGEIPAA 641
            MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKY RPLP SVASQDLRRVLL+FG+EDEDL RGKP DPD R+ PLSPT  MST      XXXXXX  REP  RD+++L RGE AGSS  GDELNFRSK FDPLQAL HKTLRPPFPKEPALDNLAKFYRMLPKPH  TGP ATAGG  XXXXXXXXXXXX AADSRSGVDYFG+G R GGAGV+PPP+AAGSP GS QARETWP S GGR R+ PLVRSAADMERADKDMA RRRL EGALAGDAEADPAD AEERFNPVKRI QEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRG CTGLIRAFDRHMNLLLVDVRE YTAFVPARGPRPP K P PKPAEEE PID DAA ASKVTGFEGL           XXXXXXX         LGKV G      AAD + FVG+SPADGSE   ATAW+VTGTGGF+GGRIRGE  G+ GG SERIDPRD RM VA  AAASG AT+E CS+E REGGAR ATRTKLLPQEWGVT EREE DPTRRTPD+EEQRP PPLPPAGRQGGD+NRG G G G +GEIPAA
Sbjct:    1 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYSRPLPPSVASQDLRRVLLEFGMEDEDLARGKPSDPDRRASPLSPTGAMSTAAAGAGXXXXXXAGREPTARDNEKLGRGEGAGSSPKGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGPTATAGGXXXXXXXXXXXXXXXAADSRSGVDYFGAGPRSGGAGVIPPPNAAGSPRGSHQARETWPTSGGGRVRYSPLVRSAADMERADKDMASRRRLAEGALAGDAEADPADFAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKQPSPKPAEEEDPIDRDAAAASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXXXXXLGKVTGXXXXXXAADDEKFVGISPADGSEQRAATAWSVTGTGGFKGGRIRGEVAGDAGGRSERIDPRDRRMPVAAVAAASGAATEEACSDETREGGARTATRTKLLPQEWGVTPEREEKDPTRRTPDAEEQRPRPPLPPAGRQGGDVNRGEGRGGGATGEIPAA 604          
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A836CP56_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP56_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.620e-18
Identity = 113/347 (32.56%), Postives = 153/347 (44.09%), Query Frame = 0
Query:   70 MAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLDFGIEDEDLVRGKPFDPDLRSPPLSPTATMSTXXXXXXXXXXXXXXREPATRDSKELKRGEAAGSSQ----TGDELNFRSKSFDPLQALQHKTLRPPFPKEPALDNLAKFYRMLPKPHTRTGPAATAGGATXXXXXXXXXXXXGAADSRSGVDYFGSGRRGGGAGVVPPPDAAGSPHGSQQARETWPASVGGRSRHGPLVRSAADMERADKDMALRRRLTEGALAGDAEADPADSAEERFNPVKRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKYT 412
            + +I AK+G ++++LSA+L KKY +PLPA+V    +R + L FG+ D +         D              XXXXXXXXXXXXX     T  S  L         Q      ++LNFRS+ F+ L ALQ   +  P P    LDN+ KF  +LP  H    P  T                                       V  PP A                S   + RH   +RSAA    A      R+  T+  +    +ADP          V ++A    G+GP S L R+  ENRR  VMIR VNS+RG+C GL++AFD+H N+++VDV E+YT
Sbjct:    3 LLQIEAKFGQRQEQLSAKLAKKYQQPLPAAVTDAAVRDICLRFGLNDPEEAGAA----DAXXXXXXXXXXXXXXXXXXXXXXXXXXPPHAVTASSASLGVPSQQADQQHRHVADEQLNFRSRHFNALFALQADGVVLPVPNAQPLDNITKFRPLLPADH----PDRT---------------------------------------VTRPPKAQ---------------SGTAQQRH---MRSAA--AEAQPTAHERQASTQQHMQ---QADP-------LALVMQVALGPQGTGPMSFLGRMWRENRRVCVMIRYVNSVRGVCAGLLKAFDKHFNMVIVDVTERYT 272          
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A5D6YBS7_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBS7_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 1.580e-10
Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 0
Query:  331 AGDAEADPADSAEERFNPV----KRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKY 411
            AGDA A    +A +R + V    +R+A  Y   GP+++L R   E RR  V++RRVNSIRG C G ++AFD+HMNL+L+DV E+Y
Sbjct:  160 AGDAGASSKAAAAKRNDAVPTLFERLADTYM-DGPFTVLRRCFLERRRVVVVVRRVNSIRGTCAGYLKAFDKHMNLVLLDVDERY 243          
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A662WXN3_9STRA (Sm domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXN3_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.430e-8
Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 0
Query:  360 GPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKY 411
            GP+ +L R   E  R  V++RRVNS+RG CTG ++AFD+HMNL+L+DV ++Y
Sbjct:   84 GPFMVLRRCFLERTRVLVVVRRVNSVRGTCTGFLKAFDKHMNLVLLDVSQEY 135          
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A3F2RTL9_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RTL9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.630e-8
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 0
Query:  331 AGDAEADPADSAEERFNPV--KRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKY 411
            A DA+    D       P   +++A  Y   GP+ +L R   E  R  V++RRVNS+RG C+G ++AFD+HMNL+L+DV ++Y
Sbjct:  155 AADAKTKVVDKKTRAATPTLFEQLADTYL-DGPFRVLRRCFLERMRVLVVVRRVNSVRGTCSGFLKAFDKHMNLVLMDVSQEY 236          
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A2D4BUY2_PYTIN (Sm domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUY2_PYTIN)

HSP 1 Score: 65.9 bits (159), Expect = 5.860e-8
Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 0
Query:  360 GPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVRE 409
            GP+S+L R   E +R  V++RRVNS+RG+C G ++AFD+HMNL+L+DV E
Sbjct:  183 GPFSVLRRCFLERKRVRVVLRRVNSVRGVCVGFLKAFDKHMNLVLLDVTE 232          
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A8K1FHD1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHD1_PYTOL)

HSP 1 Score: 65.9 bits (159), Expect = 6.260e-8
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 0
Query:  360 GPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKYTAF 414
            GP+++L R   E +R  V+IRRVNSIRG C+G ++AFD+HMNL+L+DV E    F
Sbjct:  183 GPFTVLRRCFLERKRVQVVIRRVNSIRGTCSGFLKAFDKHMNLVLLDVTEVVIPF 237          
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: W4FR27_9STRA (Sm domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR27_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 1.560e-7
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 0
Query:  348 PVKRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKY 411
            PV     +   +GP SLL+R      R  V++RR++SIRG CTG ++ FD+HMNL+L+DV +K+
Sbjct:  156 PVLHAIADLHSTGPLSLLHRCLVAKARVVVVLRRISSIRGTCTGYLKGFDKHMNLVLMDVMDKF 219          
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A1V9YMI3_9STRA (Sm domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMI3_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.050e-7
Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 0
Query:  348 PVKRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKYTAFVPARGP 420
            P+     +    GP ++L  + +   +  V+IRRVNSIRG CTG ++ FD+H N++L+DV E+Y   V    P
Sbjct:  155 PLLETIADLCADGPLNILRAILKARAKVCVVIRRVNSIRGTCTGYLKGFDKHFNIILLDVTERYVPLVSGEQP 227          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LBR8_9PHAE1.310e-29980.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0V3_ECTSI1.460e-29479.97Protein with LSm motif. Putative LSm11 n=1 Tax=Ect... [more]
A0A836CP56_9STRA1.620e-1832.56Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A5D6YBS7_9STRA1.580e-1048.24Sm domain-containing protein n=1 Tax=Pythium brass... [more]
A0A662WXN3_9STRA3.430e-853.85Sm domain-containing protein n=1 Tax=Nothophytopht... [more]
A0A3F2RTL9_9STRA5.630e-840.96Sm domain-containing protein n=1 Tax=Phytophthora ... [more]
A0A2D4BUY2_PYTIN5.860e-856.00Sm domain-containing protein n=1 Tax=Pythium insid... [more]
A0A8K1FHD1_PYTOL6.260e-854.55Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
W4FR27_9STRA1.560e-745.31Sm domain-containing protein n=2 Tax=Aphanomyces a... [more]
A0A1V9YMI3_9STRA3.050e-738.36Sm domain-containing protein n=1 Tax=Achlya hypogy... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.30.30.100coord: 339..436
e-value: 1.4E-11
score: 46.1
IPR039267U7 snRNA-associated Sm-like protein Lsm11PANTHERPTHR21415U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM11coord: 163..413
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 360..413

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig102contigEcto-sp13_S_contig102:13849..17868 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig102.221.1mRNA_Ecto-sp13_S_contig102.221.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig102 13849..17868 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig102.221.1 ID=prot_Ecto-sp13_S_contig102.221.1|Name=mRNA_Ecto-sp13_S_contig102.221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=644bp
ALQPCSLQPRHSGAHSSAVKPREERKGCSACATRRKGQPLKMGEPRTSLW
SRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYGRPLPASV
ASQDLRRVLLDFGIEDEDLVRGKPFDPDLRSPPLSPTATMSTAAAGAGSA
GTGVAGREPATRDSKELKRGEAAGSSQTGDELNFRSKSFDPLQALQHKTL
RPPFPKEPALDNLAKFYRMLPKPHTRTGPAATAGGATATEAGASAAVVGG
AADSRSGVDYFGSGRRGGGAGVVPPPDAAGSPHGSQQARETWPASVGGRS
RHGPLVRSAADMERADKDMALRRRLTEGALAGDAEADPADSAEERFNPVK
RIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHM
NLLLVDVREKYTAFVPARGPRPPQKLPPPKPAEEEGPIDGDAAPASKVTG
FEGLDGSGSGEGGYAGASGGAGSRHARGPEGLGKVRGAGAADGDNFVGVS
PADGSEPTGATAWTVTGTGGFEGGRIRGEGGGNGGGGSERIDPRDPRMDV
APAAAASGVATKEVCSNERREGGAREATRTKLLPQEWGVTHEREENDPTR
RTPDSEEQRPGPPLPPAGRQGGDINRGGGGGVGVSGEIPAAAGR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039267Lsm11
IPR010920LSM_dom_sf