mRNA_Ecto-sp13_S_contig102.221.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A6H5LBR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBR8_9PHAE) HSP 1 Score: 838 bits (2166), Expect = 1.310e-299 Identity = 489/604 (80.96%), Postives = 504/604 (83.44%), Query Frame = 1 Query: 124 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLDFGIEDEDLVRGKPFDPDLRSPPLSPTATMSTXXXXXXXXXXXXXXREPATRDSKELKRGEAAGSSQTGDELNFRSKSFDPLQALQHKTLRPPFPKEPALDNLAKFYRMLPKPHTRTGPAATAGGATXXXXXXXXXXXXGAADSRSGVDYFGSGRRGGGAGVVPPPDAAGSPHGSQQARETWPASVGGRSRHGPLVRSAADMERADKDMALRRRLTEGALAGDAEADPADSAEERFNPVKRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKYTAFVPARGPRPPQKLPPPKPAEEEGPIDGDAAPASKVTGFEGLDGSGSGEGGYAXXXXXXXSRHARGPEGLGKVRG----AGAADGDNFVGVSPADGSEPTGATAWTVTGTGGFEGGRIRGEGGGNXGGGSERIDPRDPRMDVAPAAAASGVATKEVCSNERREGGAREATRTKLLPQEWGVTHEREENDPTRRTPDSEEQRPGPPLPPAGRQGGDINRGGGGGVGVSGEIPAA 1923
MGEPRTSLWSRLVVFYSVNKRDQLN KVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLL+FG+EDEDL RGKP DPD RS PLSP TMST RE A R++KEL RGE AGSS TGDELNFRSK FDPLQAL HKTLRPPFP+EPALDNLAKFYRMLPKP T TGPAATAG XXXXXXXXXXXX ADSRSGV YFGSG RGGGAGVVPPP AAGSP GS QAR+TWPAS GGR RHG LVRSAADMERADKDMALRRRL EGALAGDAE DPADSA RFNPVKRI QEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRG CTGLIRAFDRHMNLLLVDVRE YTAFVPARGPRPP KLPPPKPAEE+ PID DAA ASKVTGFEGL XXXXXXX GPEGLGKV AGAAD D VGVSPADGSEPTGATAWTVTGTGGF+GGRI GE GG+ GG SERI PRDPRMDVA AAAASG AT+E CS+E REGGAR ATR KLLPQEWGV EREENDPT RTPD+EE+RP PPL AGR GGD+NRGGGG G +GEIPAA
Sbjct: 1 MGEPRTSLWSRLVVFYSVNKRDQLNPKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLEFGMEDEDLARGKPSDPDRRSSPLSPIGTMSTTVAGAGSAGTGVAGREAAARENKELGRGEGAGSSPTGDELNFRSKFFDPLQALLHKTLRPPFPREPALDNLAKFYRMLPKPPTSTGPAATAGXXXXXXXXXXXXXXXXXADSRSGVSYFGSGHRGGGAGVVPPPAAAGSPRGSHQARKTWPASGGGRGRHGLLVRSAADMERADKDMALRRRLAEGALAGDAETDPADSAG-RFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKLPPPKPAEED-PIDRDAAAASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXGPEGLGKVTAGAGXAGAADDDKSVGVSPADGSEPTGATAWTVTGTGGFKGGRISGEDGGDGGGSSERIYPRDPRMDVAAAAAASGAATEEACSDETREGGARTATRMKLLPQEWGVPREREENDPTGRTPDAEEKRPRPPLSTAGRHGGDVNRGGGGEGGATGEIPAA 602
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: D7G0V3_ECTSI (Protein with LSm motif. Putative LSm11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0V3_ECTSI) HSP 1 Score: 826 bits (2133), Expect = 1.460e-294 Identity = 483/604 (79.97%), Postives = 503/604 (83.28%), Query Frame = 1 Query: 124 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLDFGIEDEDLVRGKPFDPDLRSPPLSPTATMSTXXXXXXXXXXXXXXREPATRDSKELKRGEAAGSSQTGDELNFRSKSFDPLQALQHKTLRPPFPKEPALDNLAKFYRMLPKPHTRTGPAATAGGATXXXXXXXXXXXXGAADSRSGVDYFGSGRRGGGAGVVPPPDAAGSPHGSQQARETWPASVGGRSRHGPLVRSAADMERADKDMALRRRLTEGALAGDAEADPADSAEERFNPVKRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKYTAFVPARGPRPPQKLPPPKPAEEEGPIDGDAAPASKVTGFEGLDGSGSGEGGYAXXXXXXXSRHARGPEGLGKVRGAG----AADGDNFVGVSPADGSEPTGATAWTVTGTGGFEGGRIRGEGGGNXGGGSERIDPRDPRMDVAPAAAASGVATKEVCSNERREGGAREATRTKLLPQEWGVTHEREENDPTRRTPDSEEQRPGPPLPPAGRQGGDINRGGGGGVGVSGEIPAA 1923
MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKY RPLP SVASQDLRRVLL+FG+EDEDL RGKP DPD R+ PLSPT MST XXXXXX REP RD+++L RGE AGSS GDELNFRSK FDPLQAL HKTLRPPFPKEPALDNLAKFYRMLPKPH TGP ATAGG XXXXXXXXXXXX AADSRSGVDYFG+G R GGAGV+PPP+AAGSP GS QARETWP S GGR R+ PLVRSAADMERADKDMA RRRL EGALAGDAEADPAD AEERFNPVKRI QEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRG CTGLIRAFDRHMNLLLVDVRE YTAFVPARGPRPP K P PKPAEEE PID DAA ASKVTGFEGL XXXXXXX LGKV G AAD + FVG+SPADGSE ATAW+VTGTGGF+GGRIRGE G+ GG SERIDPRD RM VA AAASG AT+E CS+E REGGAR ATRTKLLPQEWGVT EREE DPTRRTPD+EEQRP PPLPPAGRQGGD+NRG G G G +GEIPAA
Sbjct: 1 MGEPRTSLWSRLVVFYSVNKRDQLNAKVMAEIVAKYGSKEKELSARLLKKYSRPLPPSVASQDLRRVLLEFGMEDEDLARGKPSDPDRRASPLSPTGAMSTAAAGAGXXXXXXAGREPTARDNEKLGRGEGAGSSPKGDELNFRSKFFDPLQALLHKTLRPPFPKEPALDNLAKFYRMLPKPHASTGPTATAGGXXXXXXXXXXXXXXXAADSRSGVDYFGAGPRSGGAGVIPPPNAAGSPRGSHQARETWPTSGGGRVRYSPLVRSAADMERADKDMASRRRLAEGALAGDAEADPADFAEERFNPVKRIVQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGTCTGLIRAFDRHMNLLLVDVRENYTAFVPARGPRPPPKQPSPKPAEEEDPIDRDAAAASKVTGFEGLGXXXXXXXXXXXXXXXXXXXXXXXXXXLGKVTGXXXXXXAADDEKFVGISPADGSEQRAATAWSVTGTGGFKGGRIRGEVAGDAGGRSERIDPRDRRMPVAAVAAASGAATEEACSDETREGGARTATRTKLLPQEWGVTPEREEKDPTRRTPDAEEQRPRPPLPPAGRQGGDVNRGEGRGGGATGEIPAA 604
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A836CP56_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP56_9STRA) HSP 1 Score: 98.2 bits (243), Expect = 1.620e-18 Identity = 113/347 (32.56%), Postives = 153/347 (44.09%), Query Frame = 1 Query: 208 MAEIVAKYGSKEKELSARLLKKYGRPLPASVASQDLRRVLLDFGIEDEDLVRGKPFDPDLRSPPLSPTATMSTXXXXXXXXXXXXXXREPATRDSKELKRGEAAGSSQ----TGDELNFRSKSFDPLQALQHKTLRPPFPKEPALDNLAKFYRMLPKPHTRTGPAATAGGATXXXXXXXXXXXXGAADSRSGVDYFGSGRRGGGAGVVPPPDAAGSPHGSQQARETWPASVGGRSRHGPLVRSAADMERADKDMALRRRLTEGALAGDAEADPADSAEERFNPVKRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKYT 1236
+ +I AK+G ++++LSA+L KKY +PLPA+V +R + L FG+ D + D XXXXXXXXXXXXX T S L Q ++LNFRS+ F+ L ALQ + P P LDN+ KF +LP H P T V PP A S + RH +RSAA A R+ T+ + +ADP V ++A G+GP S L R+ ENRR VMIR VNS+RG+C GL++AFD+H N+++VDV E+YT
Sbjct: 3 LLQIEAKFGQRQEQLSAKLAKKYQQPLPAAVTDAAVRDICLRFGLNDPEEAGAA----DAXXXXXXXXXXXXXXXXXXXXXXXXXXPPHAVTASSASLGVPSQQADQQHRHVADEQLNFRSRHFNALFALQADGVVLPVPNAQPLDNITKFRPLLPADH----PDRT---------------------------------------VTRPPKAQ---------------SGTAQQRH---MRSAA--AEAQPTAHERQASTQQHMQ---QADP-------LALVMQVALGPQGTGPMSFLGRMWRENRRVCVMIRYVNSVRGVCAGLLKAFDKHFNMVIVDVTERYT 272
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A5D6YBS7_9STRA (Sm domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBS7_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 1.580e-10 Identity = 41/85 (48.24%), Postives = 57/85 (67.06%), Query Frame = 1 Query: 991 AGDAEADPADSAEERFNPV----KRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKY 1233
AGDA A +A +R + V +R+A Y GP+++L R E RR V++RRVNSIRG C G ++AFD+HMNL+L+DV E+Y
Sbjct: 160 AGDAGASSKAAAAKRNDAVPTLFERLADTYM-DGPFTVLRRCFLERRRVVVVVRRVNSIRGTCAGYLKAFDKHMNLVLLDVDERY 243
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A662WXN3_9STRA (Sm domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WXN3_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 3.430e-8 Identity = 28/52 (53.85%), Postives = 40/52 (76.92%), Query Frame = 1 Query: 1078 GPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKY 1233
GP+ +L R E R V++RRVNS+RG CTG ++AFD+HMNL+L+DV ++Y
Sbjct: 84 GPFMVLRRCFLERTRVLVVVRRVNSVRGTCTGFLKAFDKHMNLVLLDVSQEY 135
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A3F2RTL9_9STRA (Sm domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RTL9_9STRA) HSP 1 Score: 65.5 bits (158), Expect = 5.630e-8 Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 1 Query: 991 AGDAEADPADSAEERFNPV--KRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKY 1233
A DA+ D P +++A Y GP+ +L R E R V++RRVNS+RG C+G ++AFD+HMNL+L+DV ++Y
Sbjct: 155 AADAKTKVVDKKTRAATPTLFEQLADTYL-DGPFRVLRRCFLERMRVLVVVRRVNSVRGTCSGFLKAFDKHMNLVLMDVSQEY 236
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A2D4BUY2_PYTIN (Sm domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BUY2_PYTIN) HSP 1 Score: 65.9 bits (159), Expect = 5.860e-8 Identity = 28/50 (56.00%), Postives = 40/50 (80.00%), Query Frame = 1 Query: 1078 GPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVRE 1227
GP+S+L R E +R V++RRVNS+RG+C G ++AFD+HMNL+L+DV E
Sbjct: 183 GPFSVLRRCFLERKRVRVVLRRVNSVRGVCVGFLKAFDKHMNLVLLDVTE 232
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A8K1FHD1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FHD1_PYTOL) HSP 1 Score: 65.9 bits (159), Expect = 6.260e-8 Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 1 Query: 1078 GPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKYTAF 1242
GP+++L R E +R V+IRRVNSIRG C+G ++AFD+HMNL+L+DV E F
Sbjct: 183 GPFTVLRRCFLERKRVQVVIRRVNSIRGTCSGFLKAFDKHMNLVLLDVTEVVIPF 237
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: W4FR27_9STRA (Sm domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FR27_9STRA) HSP 1 Score: 63.9 bits (154), Expect = 1.560e-7 Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 1 Query: 1042 PVKRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKY 1233
PV + +GP SLL+R R V++RR++SIRG CTG ++ FD+HMNL+L+DV +K+
Sbjct: 156 PVLHAIADLHSTGPLSLLHRCLVAKARVVVVLRRISSIRGTCTGYLKGFDKHMNLVLMDVMDKF 219
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Match: A0A1V9YMI3_9STRA (Sm domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMI3_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 3.050e-7 Identity = 28/73 (38.36%), Postives = 43/73 (58.90%), Query Frame = 1 Query: 1042 PVKRIAQEYAGSGPYSLLYRLHEENRRASVMIRRVNSIRGICTGLIRAFDRHMNLLLVDVREKYTAFVPARGP 1260
P+ + GP ++L + + + V+IRRVNSIRG CTG ++ FD+H N++L+DV E+Y V P
Sbjct: 155 PLLETIADLCADGPLNILRAILKARAKVCVVIRRVNSIRGTCTGYLKGFDKHFNIILLDVTERYVPLVSGEQP 227 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig102.221.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig102.221.1 >prot_Ecto-sp13_S_contig102.221.1 ID=prot_Ecto-sp13_S_contig102.221.1|Name=mRNA_Ecto-sp13_S_contig102.221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=644bp ALQPCSLQPRHSGAHSSAVKPREERKGCSACATRRKGQPLKMGEPRTSLWback to top mRNA from alignment at Ecto-sp13_S_contig102:13849..17868+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig102.221.1 ID=mRNA_Ecto-sp13_S_contig102.221.1|Name=mRNA_Ecto-sp13_S_contig102.221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4020bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102:13849..17868+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig102:13849..17868+ >mRNA_Ecto-sp13_S_contig102.221.1 ID=mRNA_Ecto-sp13_S_contig102.221.1|Name=mRNA_Ecto-sp13_S_contig102.221.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1932bp|location=Sequence derived from alignment at Ecto-sp13_S_contig102:13849..17868+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |