mRNA_Ecto-sp13_S_contig12657.2200.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12657.2200.1
Unique NamemRNA_Ecto-sp13_S_contig12657.2200.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12657.2200.1 vs. uniprot
Match: D7G776_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G776_ECTSI)

HSP 1 Score: 501 bits (1290), Expect = 1.700e-177
Identity = 239/251 (95.22%), Postives = 242/251 (96.41%), Query Frame = 1
Query:    1 MATRAPAGIDEAEASPSIFQVLVQRDRPLVLRNAARSWRGQPILENPGVKRLTTTWRIHPLDVGTVWEADCIFLEASVGQFLEWEKSAELLSAEGDNPFRHYDPNAHWAYADYKHLKELEDDWAKALEPIIDWSTLGCEKAATDSTLWLGTGGSHTPLHFDTYGVNLVAQLHGRKKWLLYPPADTTALAPTRIPYEESSVFSQVDARAPDLVRFPQFAEAHPLAVTLEPGDVLFVPKHWWHFVEAIDTSLS 753
            MATRAPA IDE EASPSIFQVLVQR+RPLVLRNAARSW+GQPILENP VKRL TTWRIHPL V TVWEADCIFLEASVGQFLEWEKSAE LSAEGDNPFRHYD NAHW+YADYKHLKELEDDWAKALEPIIDWSTLGCEKAATDSTLWLGTGGSHTPLHFDTYGVNLVAQLHGRKKWLLYPPADTTALAPTRIPYEESSVFSQVDARAPDLVRFPQFAEAHPLAVTLEPGDVLFVPKHWWHFVEA DTSLS
Sbjct:    1 MATRAPADIDETEASPSIFQVLVQRERPLVLRNAARSWKGQPILENPRVKRLRTTWRIHPLGVSTVWEADCIFLEASVGQFLEWEKSAEPLSAEGDNPFRHYDRNAHWSYADYKHLKELEDDWAKALEPIIDWSTLGCEKAATDSTLWLGTGGSHTPLHFDTYGVNLVAQLHGRKKWLLYPPADTTALAPTRIPYEESSVFSQVDARAPDLVRFPQFAEAHPLAVTLEPGDVLFVPKHWWHFVEATDTSLS 251          
BLAST of mRNA_Ecto-sp13_S_contig12657.2200.1 vs. uniprot
Match: UPI0018D8A80B (HSPB1-associated protein 1-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D8A80B)

HSP 1 Score: 213 bits (542), Expect = 2.900e-62
Identity = 113/237 (47.68%), Postives = 149/237 (62.87%), Query Frame = 1
Query:   79 RPLVLRNAARSWRGQP--------ILENPGVKRLTTTWRIHPLDVGTVWEADCIFLEASVGQFLEWEKS--AELLSAE-GDNPFRHYDPNAHWAYADYKHLKELEDDWAKALEPIIDWSTLGCE-KAATDSTLWLGTGGSHTPLHFDTYGVNLVAQLHGRKKWLLYPPADTTALAPTRIPYEESSVFSQVDARAPDLVRFPQFAEAHPLAVTLEPGDVLFVPKHWWHFVEAIDTSLS 753
            +PLVL+N+  SW  +         +L+   VK  T +     L+   +WE DC   EA++GQF EW +S      SA+   NP   Y    HW Y DYK +  + +D    L+  + WS LG E +    STLW+G+ G+ TP H+DTYG NLVAQ++GRK+W L+PP+ T  L PTRIPYEESSVFS V+   P L R+P+F EA P  VTLEPG+VLFVPKHWWHFVE+++TS+S
Sbjct:   19 QPLVLKNSLDSWPSRQWSPDYLASVLKEKKVKIRTGSLSAQNLN-SVLWEVDCTHEEATLGQFCEWLRSDAPTTCSAQTSQNPLLKYKRQDHWCYVDYKQMAFMFEDHPDILQ-AVRWSDLGFEDRDGRQSTLWIGSAGAFTPGHYDTYGFNLVAQIYGRKRWHLFPPSQTHLLYPTRIPYEESSVFSPVNIANPALDRYPKFVEATPYVVTLEPGEVLFVPKHWWHFVESLETSIS 253          
BLAST of mRNA_Ecto-sp13_S_contig12657.2200.1 vs. uniprot
Match: A0A6P4XGZ5_BRABE (HSPB1-associated protein 1-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4XGZ5_BRABE)

HSP 1 Score: 205 bits (522), Expect = 2.020e-61
Identity = 106/246 (43.09%), Postives = 154/246 (62.60%), Query Frame = 1
Query:   40 ASPSIFQVLVQRDRPLVLRNAARSWRGQP---ILENPGVKRLTTTWRIHPLDVGTVWEADCIFLEASVGQFLEWEKSAELLSAEGD----NPFRHYDPNAHWAYADYKHLKELEDDWAKALEPIIDWSTLGCE-KAATDSTLWLGTGGSHTPLHFDTYGVNLVAQLHGRKKWLLYPPADTTALAPTRIPYEESSVFSQVDARAPDLVRFPQFAEAHPLAVTLEPGDVLFVPKHWWHFVEAIDTSLS 753
            +SP++F+ +VQ          A +W  +    +LEN  + R  T  R +P     +WE DC +++AS+ QF  W         E +    NP + Y+P+  WAY DYK++ EL  D    LE  + W   G   ++  +ST+W+G+ G+HTP H+DTYG NLV Q++GRKKW+L+PP D+ +L PTR+PYEESSVFSQV+   P++ + P+   +HP  V LEPGDVLFVPKHWWH+VE++ TS++
Sbjct:   20 SSPAVFKGMVQNW-------PASNWSPESLAQVLENRTL-RFRTGPR-NPASKDVLWETDCEYIDASLYQFCLWLDPVSPHPPEDNSTDSNPLQPYNPDNTWAYLDYKYMAELFSDQPDILE-AVRWEDFGFPGRSGVESTIWVGSVGAHTPCHYDTYGCNLVLQVYGRKKWVLFPPEDSPSLYPTRLPYEESSVFSQVNVAHPNVEQHPKVVNSHPYVVVLEPGDVLFVPKHWWHYVESLSTSIA 255          
BLAST of mRNA_Ecto-sp13_S_contig12657.2200.1 vs. uniprot
Match: UPI001603A1F7 (HSPB1-associated protein 1-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001603A1F7)

HSP 1 Score: 209 bits (532), Expect = 7.180e-61
Identity = 108/247 (43.72%), Postives = 155/247 (62.75%), Query Frame = 1
Query:   43 SPSIFQVLVQRDRPLVLRNAARSWRGQPILENPGVKRLTTTWRIHPLDVGTVWEADCIFLEASVGQFLEW---------EKSAELLSAEGDNPFRHYDPNAHWAYADYKHLKELEDDWAKALEPIIDWSTLGCE-KAATDSTLWLGTGGSHTPLHFDTYGVNLVAQLHGRKKWLLYPPADTTALAPTRIPYEESSVFSQVDARAPDLVRFPQFAEAHPLAVTLEPGDVLFVPKHWWHFVEAIDTSLS 753
            SP++F+ +V+ D P +  + AR      +LEN  + R  T  R +P     +WE DC +++A++ QF EW          +     + E  NPF+ Y P   WAY DYK++ E+  D    L+ +  W   G   +  T+ST+W+G+ G+HTP H+DTYG NLV Q++GRKKW+L+PP D+  L PTR+PYEESSVFSQV+   PD+ + P+   +HP  V LEPGDVLFVPKHWWH+VE++ TS++
Sbjct:   24 SPAVFKGMVE-DWPALKWSPARL---AQVLENRTL-RFRTGPR-NPASKDVLWETDCEYIDATLQQFCEWLDPVSSPAPREECVTDNKENSNPFQPYHPAHTWAYLDYKYMAEVFCDQPDILQGVR-WEDFGFPGRTGTESTIWVGSAGAHTPCHYDTYGCNLVLQVYGRKKWVLFPPEDSANLYPTRLPYEESSVFSQVNVAHPDIQQHPKLMSSHPHVVILEPGDVLFVPKHWWHYVESLSTSVA 263          
BLAST of mRNA_Ecto-sp13_S_contig12657.2200.1 vs. uniprot
Match: C3Z534_BRAFL (JmjC domain-containing protein n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3Z534_BRAFL)

HSP 1 Score: 202 bits (515), Expect = 2.600e-60
Identity = 106/247 (42.91%), Postives = 153/247 (61.94%), Query Frame = 1
Query:   43 SPSIFQVLVQRDRPLVLRNAARSWRGQPILENPGVKRLTTTWRIHPLDVGTVWEADCIFLEASVGQFLEW---------EKSAELLSAEGDNPFRHYDPNAHWAYADYKHLKELEDDWAKALEPIIDWSTLGCE-KAATDSTLWLGTGGSHTPLHFDTYGVNLVAQLHGRKKWLLYPPADTTALAPTRIPYEESSVFSQVDARAPDLVRFPQFAEAHPLAVTLEPGDVLFVPKHWWHFVEAIDTSLS 753
            SP++F+ +V+ D P +  + AR      +LE   + R  T  R +P     +WE DC +++A++ QF +W          +     + E  NPF+ Y P   WAY DYK++ E+  D    L+ +  W   G   +  T+ST+W+G+ G+HTP H+DTYG NLV Q++GRKKW+L+PP D+  L PTR+PYEESSVFSQV+   PD+   P+   +HP  V LEPGDVLFVPKHWWH+VE++ TS++
Sbjct:   24 SPAVFKGMVE-DWPALNWSPARL---AQVLEYRTL-RFRTGPR-NPASKDVLWEMDCEYIDATLQQFCDWLDPVSSPAPREECVTDNKEDSNPFQPYHPAHTWAYLDYKYMAEVFCDQPDILQGVR-WEDFGFPGRTGTESTIWVGSAGAHTPCHYDTYGCNLVLQVYGRKKWVLFPPEDSPKLYPTRLPYEESSVFSQVNVAHPDVEEHPKVMSSHPHVVILEPGDVLFVPKHWWHYVESLSTSVA 263          
BLAST of mRNA_Ecto-sp13_S_contig12657.2200.1 vs. uniprot
Match: A0A8B6D9H0_MYTGA (HSPB1-associated protein 1 n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6D9H0_MYTGA)

HSP 1 Score: 204 bits (520), Expect = 2.110e-59
Identity = 102/231 (44.16%), Postives = 143/231 (61.90%), Query Frame = 1
Query:   82 PLVLRNAARSWRGQPILENPGVKRLTTT---WRIHPLDVGTVWEADCIFLEASVGQFLEWEKSAELLSAEGDNPFRHYDPNAHWAYADYKHLKEL---EDDWAKALEPIIDWSTLGCE-KAATDSTLWLGTGGSHTPLHFDTYGVNLVAQLHGRKKWLLYPPADTTALAPTRIPYEESSVFSQVDARAPDLVRFPQFAEAHPLAVTLEPGDVLFVPKHWWHFVEAIDTSLS 753
            P+VL+N    W  +    N     LT      ++ P D   +WE +C+  E ++ QF+EW     L   + +NP   Y+ +    Y DYK++K+L   + D  KA    +DWS  G + +   DST+W+G+ G +T  H+DTYG NLVAQ++GRK+W L+PP+DT  + PTRIPYEESSVFS VD + PD   F  F  +HP  V LEPGDVL+VP+HWWHFVE+++TS+S
Sbjct:   15 PIVLKNRISDWPSRKWTPNYLASELTNQRYKCKVAPKDDNVLWETECVHEEITLQQFVEWN----LGKPDENNPLFPYNKSDVTCYIDYKYMKDLFIEKTDHMKA----VDWSVFGLDNRDGNDSTIWIGSEGCYTNCHYDTYGFNLVAQIYGRKRWTLFPPSDTKYMYPTRIPYEESSVFSPVDVKKPDTTTFHLFKNSHPHVVILEPGDVLYVPRHWWHFVESLETSIS 237          
BLAST of mRNA_Ecto-sp13_S_contig12657.2200.1 vs. uniprot
Match: A0A8D0BTI1_9SAUR (HSPB1 associated protein 1 n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0BTI1_9SAUR)

HSP 1 Score: 204 bits (518), Expect = 2.350e-59
Identity = 106/234 (45.30%), Postives = 147/234 (62.82%), Query Frame = 1
Query:   58 QVLVQRDRPLVLRNAARSWRGQPILENPGVKRLT---TTWRIHPLDVGT--VWEADCIFLEASVGQFLEWEKSAELLSAEGDNPFRHYDPNAHWAYADYKHLKELEDDWAKALEPIIDWSTLGCE-KAATDSTLWLGTGGSHTPLHFDTYGVNLVAQLHGRKKWLLYPPADTTALAPTRIPYEESSVFSQVDARAPDLVRFPQFAEAHPLAVTLEPGDVLFVPKHWWHFVEAID 741
            ++++   +P+V RN A  W           K L      +R+   DVG   ++E DC ++EA++ +FL W   +   S+    PF  YD   +WAYADYK++ +L +D  +  + I  WS  G   ++  +STLW+G+ G++TP H D+YG NLV Q+ GRK+W LYPP DT  L PTRIPYEESSVF +V+  +PDL R+PQF +A P  VTL PG VLFVPKHWWH+VE+ID
Sbjct:   20 EIVMSHQKPVVFRNMASDWPALQWNVTYLAKLLAGKQILFRLGTKDVGKTPLFETDCSYVEATLDEFLAW---STRXSSRSCGPFSGYDLCKYWAYADYKYIAKLFEDKPENFQDIR-WSDFGFTGRSGRESTLWIGSSGANTPCHLDSYGCNLVLQVQGRKRWHLYPPEDTNFLYPTRIPYEESSVFCKVNVVSPDLKRYPQFEKAKPHIVTLAPGQVLFVPKHWWHYVESID 249          
BLAST of mRNA_Ecto-sp13_S_contig12657.2200.1 vs. uniprot
Match: V4BFN1_LOTGI (JmjC domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BFN1_LOTGI)

HSP 1 Score: 198 bits (503), Expect = 3.090e-59
Identity = 101/240 (42.08%), Postives = 147/240 (61.25%), Query Frame = 1
Query:   55 FQVLVQ-RDRPLVLRN-----AARSWRGQPILENPGVKRLTTTWRIHPLDVGTVWEADCIFLEASVGQFLEWEKSAELLSAEGDNPFRHYDPNAHWAYADYKHLKELEDDWAKALEPIIDWSTLGC-EKAATDSTLWLGTGGSHTPLHFDTYGVNLVAQLHGRKKWLLYPPADTTALAPTRIPYEESSVFSQVDARAPDLVRFPQFAEAHPLAVTLEPGDVLFVPKHWWHFVEAIDTSLS 753
            F+  ++ R++P+V +N     +AR W  Q + +   +K      +I P   G ++E  C++L+ ++  F+EW  S    S    NP    D + ++ Y DYK++ EL  D  + L+ + DW   G  ++   DST+W+G+ G  TP H+DTYG NLV+Q+ GRKKW L+PP D  +L PTRIPYEESSVFS+V+    D  R P F   HP  V LEPGDVL+VPKHWWH+V+ +DT++S
Sbjct:    3 FETFIKDRNQPVVFKNFINEWSARKWTLQHLAQY--LKDTEIKCKIGPKFQG-IFETQCLYLDITIDDFIEWCSSKSRPS----NPLHQIDKDKYFCYLDYKYMVELFSDNEEILQSV-DWGVFGLTDRYGNDSTIWIGSDGCTTPCHYDTYGFNLVSQISGRKKWYLFPPGDMESLYPTRIPYEESSVFSEVNITNTDFNRHPHFKNCHPYMVILEPGDVLYVPKHWWHYVQCLDTAIS 234          
BLAST of mRNA_Ecto-sp13_S_contig12657.2200.1 vs. uniprot
Match: UPI0001CBC150 (HSPB1-associated protein 1 homolog n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBC150)

HSP 1 Score: 202 bits (513), Expect = 6.950e-59
Identity = 94/190 (49.47%), Postives = 128/190 (67.37%), Query Frame = 1
Query:  190 GTVWEADCIFLEASVGQFLEW-EKSAELLSAEGDNPFRHYDPNAHWAYADYKHLKELEDDWAKALEPIIDWSTLG-CEKAATDSTLWLGTGGSHTPLHFDTYGVNLVAQLHGRKKWLLYPPADTTALAPTRIPYEESSVFSQVDARAPDLVRFPQFAEAHPLAVTLEPGDVLFVPKHWWHFVEAIDTSLS 753
            G +WE DC++  A++  + EW  K +E LS   DNP + +    +W YADYK++  +  D    L+ +  WS  G  ++  T+ST+W+G+ GSHTP HFDTYG NLVAQ+HG+KKW L+ P  T  L PTRIPYEESSVFS V+   PDL + P F +A P  +TL+PGDVL+VP+HWWHFVE +  ++S
Sbjct:   72 GVLWERDCMYRNATLYCYNEWLNKDSEQLSE--DNPLKEFPSTDYWCYADYKYMAHVFQDRTDILKSV-KWSNFGFADRDGTESTIWIGSEGSHTPCHFDTYGCNLVAQIHGKKKWSLFAPHQTAMLYPTRIPYEESSVFSHVNITNPDLKKHPCFQDATPYVITLQPGDVLYVPRHWWHFVECLTPAIS 258          
BLAST of mRNA_Ecto-sp13_S_contig12657.2200.1 vs. uniprot
Match: UPI000462DCF0 (HSPB1-associated protein 1 isoform X2 n=1 Tax=Anolis carolinensis TaxID=28377 RepID=UPI000462DCF0)

HSP 1 Score: 198 bits (503), Expect = 7.120e-59
Identity = 94/195 (48.21%), Postives = 135/195 (69.23%), Query Frame = 1
Query:  166 WRIHPLDVGT--VWEADCIFLEASVGQFLEWEKSAELLSAEGDNPFRHYDPNAHWAYADYKHLKELEDDWAKALEPIIDWSTLGCE-KAATDSTLWLGTGGSHTPLHFDTYGVNLVAQLHGRKKWLLYPPADTTALAPTRIPYEESSVFSQVDARAPDLVRFPQFAEAHPLAVTLEPGDVLFVPKHWWHFVEAID 741
            +RI   D+GT  ++E +C ++EA++ +FL W       S     PF+ YD + +W YADYK++ +L +D  +  + ++ WS  G E +   DSTLW+G+ G++TP H D+YG NLV Q+ GRK+W LYPP D++ L PTR+PYEESSVFS+V+  +PDL  +PQF +A    +TLEPG VLFVP+HWWH+VE+ID
Sbjct:   66 FRIGKKDMGTAPLFETECSYVEATLEEFLAWSGRQPSCSC---GPFKAYDLHKYWTYADYKYIAQLFEDKPEHFQDVV-WSDFGFEGRNGRDSTLWIGSRGANTPCHLDSYGCNLVLQVQGRKRWYLYPPEDSSFLYPTRLPYEESSVFSKVNVVSPDLRSYPQFKKAQAHVMTLEPGQVLFVPRHWWHYVESID 256          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12657.2200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G776_ECTSI1.700e-17795.22JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
UPI0018D8A80B2.900e-6247.68HSPB1-associated protein 1-like n=1 Tax=Patiria mi... [more]
A0A6P4XGZ5_BRABE2.020e-6143.09HSPB1-associated protein 1-like n=1 Tax=Branchiost... [more]
UPI001603A1F77.180e-6143.72HSPB1-associated protein 1-like n=1 Tax=Branchiost... [more]
C3Z534_BRAFL2.600e-6042.91JmjC domain-containing protein n=1 Tax=Branchiosto... [more]
A0A8B6D9H0_MYTGA2.110e-5944.16HSPB1-associated protein 1 n=2 Tax=Mytilus gallopr... [more]
A0A8D0BTI1_9SAUR2.350e-5945.30HSPB1 associated protein 1 n=1 Tax=Salvator merian... [more]
V4BFN1_LOTGI3.090e-5942.08JmjC domain-containing protein n=1 Tax=Lottia giga... [more]
UPI0001CBC1506.950e-5949.47HSPB1-associated protein 1 homolog n=1 Tax=Saccogl... [more]
UPI000462DCF07.120e-5948.21HSPB1-associated protein 1 isoform X2 n=1 Tax=Anol... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12657contigEcto-sp13_S_contig12657:3..2840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score503.8
Seed ortholog evalue4.5e-140
Seed eggNOG ortholog2880.D7G776
Preferred nameHSPBAP1
Model size753
KEGG koko:K19375
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0044424,GO:0044464
Exons6
EggNOG free text desc.tRNAPhe (7-(3-amino-3-carboxypropyl)wyosine37-C2)-hydroxylase activity
EggNOG OGsKOG2132@1,KOG2132@2759
Ec32 ortholog descriptionJumonji domain protein
Ec32 orthologEc-01_010780.1
Cds size753
COG Functional cat.IQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12657.2200.1prot_Ecto-sp13_S_contig12657.2200.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12657 3..2840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462675.974253-CDS-Ecto-sp13_S_contig12657:2..1171681462675.974253-CDS-Ecto-sp13_S_contig12657:2..117Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12657 3..117 -
1681462675.9841626-CDS-Ecto-sp13_S_contig12657:395..5321681462675.9841626-CDS-Ecto-sp13_S_contig12657:395..532Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12657 396..532 -
1681462675.9920373-CDS-Ecto-sp13_S_contig12657:926..10761681462675.9920373-CDS-Ecto-sp13_S_contig12657:926..1076Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12657 927..1076 -
1681462675.9994338-CDS-Ecto-sp13_S_contig12657:1261..13011681462675.9994338-CDS-Ecto-sp13_S_contig12657:1261..1301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12657 1262..1301 -
1681462676.0068927-CDS-Ecto-sp13_S_contig12657:1490..16661681462676.0068927-CDS-Ecto-sp13_S_contig12657:1490..1666Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12657 1491..1666 -
1681462676.0176558-CDS-Ecto-sp13_S_contig12657:2705..28401681462676.0176558-CDS-Ecto-sp13_S_contig12657:2705..2840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12657 2706..2840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12657.2200.1

>prot_Ecto-sp13_S_contig12657.2200.1 ID=prot_Ecto-sp13_S_contig12657.2200.1|Name=mRNA_Ecto-sp13_S_contig12657.2200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=251bp
MATRAPAGIDEAEASPSIFQVLVQRDRPLVLRNAARSWRGQPILENPGVK
RLTTTWRIHPLDVGTVWEADCIFLEASVGQFLEWEKSAELLSAEGDNPFR
HYDPNAHWAYADYKHLKELEDDWAKALEPIIDWSTLGCEKAATDSTLWLG
TGGSHTPLHFDTYGVNLVAQLHGRKKWLLYPPADTTALAPTRIPYEESSV
FSQVDARAPDLVRFPQFAEAHPLAVTLEPGDVLFVPKHWWHFVEAIDTSL
S
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mRNA from alignment at Ecto-sp13_S_contig12657:3..2840-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12657.2200.1 ID=mRNA_Ecto-sp13_S_contig12657.2200.1|Name=mRNA_Ecto-sp13_S_contig12657.2200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2838bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12657:3..2840- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGACAAGGGCTCCCGCTGGTATCGACGAGGCTGAAGCTTCACCATC GATATTCCAAGTGCTGGTCCAAAGAGATAGACCGCTGGTGCTCAGAAACG CTGCGAGGTCTTGGAGAGGTCAACCTATTCTTGAGGTGAGAGTCTCTCTG TAAGCAAGTGATTCACACCGCTTCACCTGCAAGCTATCAGGGAGGCAGCG TCGATGTATAAGTAAGTACATAGCAGTTGGCAGTCCGTAAAGCTTGTAGC ACACACCACAGCAGTAGCGGTAGATACCTGTGAAAATGCCCGTGTAGTTT GATGGCAATTTAGATGGGATATCAACACGCACTCACGTGCTCTACAGCAG TCCTACGATGCATACGAATTGTACAGCACACGATGTACGGTAGATACATT TGAATGAAACGTGTGTTTGTTGTGCCAATTTATGTACTTCATGTGTAGAT ATGGTAACAACATGAGTCCTCCATCGCAGTCCTCCTGTCGGGGGAGCCCG GGGAGTAAAGACATTTAGACACCGTTTATTTGTTGGAACTGGTTTGTTCC GCTCGTAGACCGACGTCCTCGTTGGCGAGCAGGTTAGCGCCGTCGATGTG AGTTGCTTCGTAAGCGTCTAAACATGCTCAAACGTCCAGACTGACAAAGC ACAGCAATATTTTCATTGATCAGCCGGTAGGCGCGGTCATCAACGCAACG TTTGCATTACAAACAAAGTCTGTACATGCACATAATCCTGAGACTTGGAC CATTTCGTCCAGTCTCCTCGGCACCTCTCTGTCGGATGAGCCCGCTACCT AGTTCGCGTCTTTCGTCGCTGTGTTGCTGTAGACGGCTCAGCTCGTTTCA TTGGCCAGCAGGTAAGAGCGATCGATGCCTGCTAAAGAAGTGCATGCACA ACACAGGGGAGGCCGAGGGCATGTGCTGGTAAGCTCTTCGATCCTACCGT AATACGAAGTCTAATTGCGGTACTCGCGCCGTCAAATGAACCCATGCTGG CTGGTGGATCAGCCTTTGTCATGTCACCTCGACGCATTGCGCACGTCCTC ATAGATTAATGCATCGACCGGCTAGTTGTTGACGACACAAGATTCATATC GCTGATTCGCTTTTCGTGCTTACGCCTATCCTTCGTGCTTTGTATTATCG GTCGTTCTGCGACATGAACAGTAGAACCCTGGTGTCAAGCGCCTAACGAC CACATGGCGGATTCATCCGCTGGATGTCGGCACGGTGTGGGAGGCAGACT GCATCTTCCTGGAAGCCTCTGTAGGCCAGTTTCTGGAGTGGGAGAAGTCG GCCGAACTGCTCTCTGCAGAGGGTGACAACCCTTTCAGACATTACGATCC GTGAGATACTGAAGTACTGTTGTTTCGTCAGCCTTTTTTTGTGGTGCCCT TTTTTCACTATTGATTATCTCAGTACTGAGAGGGCGCGCCCTGCCGGCAA ATGTGACTTGAGTTGGTGCAAGTCGGCAACTTGCCCCCACCAAGCCACCC CCGCCCCGTTTCAATACGCCCGGTCCTGTTGCGTCCCAGGAATGCTCACT GGGCGTACGCGGACTACAAGCACTTGAAGGTAGGTTCGAGGCGCCATTCC AATGGGCGATACTGTACGTGTTGATCCGACTTGTCTGGCGGGTGTCCTAC ACAACGTGGTGGTATGACAGCACTGACAAAAGCATTTATTCACCGGTGCA GGCGAGACGATAAGACTTACCATTCGCAATTTGCTGCTCCGACGTTACTG CTCCACCCGTTAAGGAGCTCGAAGATGATTGGGCGAAGGCTCTAGAACCG ATAATTGATTGGTCGACGCTGGGTTGCGAGAAAGCTGCGACGGACTCCAC ACTGTGGTTGGGCACGGGGGGCTCTCACACGCCTCTCCACTTTGACACCT ATGGCGTCAATCTGGTGAGGCGGCGTAACCAAACTACCCTTGCACCGTAC CAGCGTGCCTTGCATATGTCGTCCATCCCCTTCGCCGGCCGACCCCCTGG CATCGATGGGCCTTGGCGGCGCAGACGTTGAAGGACTCGGACGCTTGCGT TTCGGCTCATGCTACTTTAGTGGAGGTTACTGTCCAAGGCTGCTATGGTC CAAGGGAAAACACCGGCCCTATATCGGACACCCGGCACTGTTCAGAATAC GAGAAAACTTGAATATTCCACCTGTGTCAAGCGATTTCTTGATCAGGGCA GCCGGCCTTACATATGCGGCGTTGAACAGCGACCTCTACTGCTGTACATG AGGATACACACGTCGATGTGTCGAGTAAAAAGAAGTATACCTCATGCTTC ATGCCCAGGTGGCCCAACTGCACGGCAGAAAAAAATGGCTCCTCTACCCT CCAGCTGACACAACGGCCCTTGCGCCAACCCGGATACCGTACGAAGAGAG CAGTGTGTTCAGCCAGGTGGACGCCAGAGCGCCAGACCTTGTCAGGTGGG CTCTGAGGCCGTCGTGGGAAGTGTGTTGTGTGTAAACGCAGAGTGTTCCG CACGATATACTGCCATCGGGCGCTTCGCTGATATGCGTGCAACGTTTGGG GGGGTGCAAGATTCTTTGCTGCGGCGAGTCAACAGTGTTCTTCCTTTGCG GTCCACTGGCGGAATCCGGTTTGTGTCGTTTCCGGTCGGTGTGTTTATGT CAGTAGTGTTGGTATGTTTTACGATCCCTCACATCACGTGCAATACCCCC TGTCGACAATTTCTCCTCGCAAGGTTTCCTCAGTTTGCAGAGGCGCATCC ACTGGCTGTTACGCTTGAGCCAGGAGATGTCCTTTTCGTCCCGAAGCACT GGTGGCACTTTGTGGAGGCGATAGACACTTCGCTGAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12657:3..2840-

>mRNA_Ecto-sp13_S_contig12657.2200.1 ID=mRNA_Ecto-sp13_S_contig12657.2200.1|Name=mRNA_Ecto-sp13_S_contig12657.2200.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=753bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12657:3..2840- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGACAAGGGCTCCCGCTGGTATCGACGAGGCTGAAGCTTCACCATC
GATATTCCAAGTGCTGGTCCAAAGAGATAGACCGCTGGTGCTCAGAAACG
CTGCGAGGTCTTGGAGAGGTCAACCTATTCTTGAGAACCCTGGTGTCAAG
CGCCTAACGACCACATGGCGGATTCATCCGCTGGATGTCGGCACGGTGTG
GGAGGCAGACTGCATCTTCCTGGAAGCCTCTGTAGGCCAGTTTCTGGAGT
GGGAGAAGTCGGCCGAACTGCTCTCTGCAGAGGGTGACAACCCTTTCAGA
CATTACGATCCGAATGCTCACTGGGCGTACGCGGACTACAAGCACTTGAA
GGAGCTCGAAGATGATTGGGCGAAGGCTCTAGAACCGATAATTGATTGGT
CGACGCTGGGTTGCGAGAAAGCTGCGACGGACTCCACACTGTGGTTGGGC
ACGGGGGGCTCTCACACGCCTCTCCACTTTGACACCTATGGCGTCAATCT
GGTGGCCCAACTGCACGGCAGAAAAAAATGGCTCCTCTACCCTCCAGCTG
ACACAACGGCCCTTGCGCCAACCCGGATACCGTACGAAGAGAGCAGTGTG
TTCAGCCAGGTGGACGCCAGAGCGCCAGACCTTGTCAGGTTTCCTCAGTT
TGCAGAGGCGCATCCACTGGCTGTTACGCTTGAGCCAGGAGATGTCCTTT
TCGTCCCGAAGCACTGGTGGCACTTTGTGGAGGCGATAGACACTTCGCTG
AGC
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