mRNA_Ecto-sp13_S_contig1262.2167.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1262.2167.1
Unique NamemRNA_Ecto-sp13_S_contig1262.2167.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: A0A6H5L0P4_9PHAE (Swi3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P4_9PHAE)

HSP 1 Score: 780 bits (2015), Expect = 1.490e-278
Identity = 484/595 (81.34%), Postives = 504/595 (84.71%), Query Frame = 1 
Query:    1 MSESEEERRPRPIGVADESDEDSGMERTDS---NKRTKPGPDSTGVAAPEEAATAKKVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDREEEREDEELAGSRYAMEVDGDGGYEGKSDRQVAAEGSAAAMSDQVRQRIEANRRLALDRLRLKKQEAXXXXXXXXXXXEKENDRGAVAVP-AANDGSREVEDLEEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEASRGKNTLAEPGPAVVSTSPATTLAVESYETAGTVDEEPASPEPTIRENEAMEDAGSGASGANTAAAVVADDANDMSPVSAPSDGVARREVRAAGAGCAGSVDEASATCSAXXXXXXXXXXXXXXXXXXSGGELPPASEPGAPDPGVGGGQERDGANDEAASLRTAAATGA-----DGITGGAKVDDAIWGGRDGXXXXAPEPVAAKGDEEGASFSSPAKCRAATAAASGLPLSPLGSLFAGTDVSAEGGLAVAREPPGGLLSDENV 1758
            MSESEEERRPRPIGVAD S EDSGMERTD+   N  T+PG DSTGVAAPEE  TAKKVSNRPPAFSENHLVKEKGL QVYKDFPQKC+YKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKL GRARTR+LM ELRDTERDRVLEAK+GREAVDDVH+QEAARLAAKESKTAAAEGDR EEREDEE AGSRY MEVDGDGG EGKSDRQVAAEGSAAAMS+QVRQRIEANRRLALDRLR KK EA   XXXXXXXX             AANDGSREVEDLEEDLMDVDGGGGPGD FDDDEAALADME E+MAARPVAAEASR KNT+AEPGPAVVSTSPA+TLAVES ETAG VDEE A PEP+IRE+EAMED GS ASGANTAAAVVADDA D +PVSA +DGVAR   RAAGAGCAG+VDEA AT +A                  SGGELPPASEPG P PGVGGGQ+RDGANDEAASLRT  A        DGITGGAKVDDA+      XXXXAPEPVAAKGDEEGASFSSPAKCR+ATAAASGLPLSPLG+LFAGTDVSAEGGLAV REP GGL SDENV
Sbjct:    1 MSESEEERRPRPIGVADGSGEDSGMERTDAAGANNGTEPGLDSTGVAAPEEVTTAKKVSNRPPAFSENHLVKEKGLWQVYKDFPQKCRYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLAGRARTRSLMRELRDTERDRVLEAKFGREAVDDVHSQEAARLAAKESKTAAAEGDRAEEREDEEFAGSRYTMEVDGDGGDEGKSDRQVAAEGSAAAMSEQVRQRIEANRRLALDRLRSKKHEASVAXXXXXXXXXXXXXXXXXXXXXAANDGSREVEDLEEDLMDVDGGGGPGDGFDDDEAALADMETEQMAARPVAAEASRRKNTVAEPGPAVVSTSPASTLAVESDETAGAVDEELAPPEPSIREDEAMEDTGSRASGANTAAAVVADDAKDPAPVSAAADGVARGGARAAGAGCAGNVDEAPATWAADAAGGGEPDATAGEE---SGGELPPASEPGTPGPGVGGGQDRDGANDEAASLRTMTAXXXXXXXXDGITGGAKVDDAVLXXXX-XXXXAPEPVAAKGDEEGASFSSPAKCRSATAAASGLPLSPLGTLFAGTDVSAEGGLAVVREPLGGLFSDENV 591
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BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: D7FKE8_ECTSI (Swi3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE8_ECTSI)

HSP 1 Score: 656 bits (1693), Expect = 1.110e-230
Identity = 431/593 (72.68%), Postives = 444/593 (74.87%), Query Frame = 1 
Query:    1 MSESEEERRPRPIGVADESDEDSGMERTDS---NKRTKPGPDSTGVAAPEEAATAKKVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDREEEREDEELAGSRYAMEVDGDGGYEGKSDRQVAAEGSAAAMSDQVRQRIEANRRLALDRLRLKKQEAXXXXXXXXXXXEKENDRGAVAVPAANDGSREVEDLEEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEASRGKNTLAEPGPAVVSTSPATTLAVESYETAGTVDEEPASPEPTIRENEAMEDAGSGASGANTAAAVVADDANDMSPVSAPSDGVARREVRAAGAGCAGSVDEASATCSAXXXXXXXXXXXXXXXXXXSGGELPPASEPGAPDPGVGGGQERDGANDEAASLRT---AAATGADGITGGAKVDDAIWGGRDGXXXXAPEPVAAKGDEEGASFSSPAKCRAATAA-ASGLPLSPLGSLFAGTDVSAEGGLAVAREPPGGLLSDENV 1758
            MSESEEERRPRPIGVAD SDEDSGMERTD+   N  ++PG DSTGVAAPEEA TAKKVSNRPPAFSENHLVKEKGL Q+YKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLA RTEKLGGRARTR+L+ ELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDR EEREDEELAGSRYAMEVDGDGG EGKSDRQVAAEGSAA MSDQVRQRIEANRRLALDRLRLKKQE XXXXXXXXXXX              NDGSREVED EEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEASRGKNT+AEPGPA V TSP +TLAVE                                                             R  RAAGAGCAGSVDEASA C+                   SGGELPPASEP AP PGVGGG+ERDGANDEAASL T   A+A GADGITGGAK+DDA+ G    XXXX             ASFSSPAKCR      ASGLPLSPLGSLFAGTDVSAEGGLAVAREP GGL SDENV
Sbjct:    1 MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNGSEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLACRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDRVEEREDEELAGSRYAMEVDGDGGDEGKSDRQVAAEGSAATMSDQVRQRIEANRRLALDRLRLKKQEXXXXXXXXXXXX---XXXXXXXXXXXNDGSREVEDPEEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEASRGKNTVAEPGPAAVVTSPPSTLAVE-------------------------------------------------------------RGARAAGAGCAGSVDEASAKCAVAAARSGEPGTTAGEE---SGGELPPASEPSAPAPGVGGGRERDGANDEAASLGTTAAASAAGADGITGGAKLDDAVLGXXX-XXXXXXXXXXXXXXXXXASFSSPAKCRXXXXXXASGLPLSPLGSLFAGTDVSAEGGLAVAREPLGGLFSDENV 525
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BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: A0A836CM34_9STRA (Swi3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM34_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.900e-21
Identity = 58/113 (51.33%), Postives = 76/113 (67.26%), Query Frame = 1 
Query:  139 EEAATAKK-VSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDRVLEAKYGREAVD 474
            EE   AKK    R P FSE  LV+ KGL ++  DFP++ +   +G+E EFL  LM  YKEWGYQLYP +AFEDLA R E LGG+ R R  +  +RD ERDR + A++G++AV+
Sbjct:   52 EEGKPAKKPAKRRAPPFSEVQLVEGKGLMKIRDDFPKRLKPCVKGKEREFLSRLMFLYKEWGYQLYPSLAFEDLAVRIETLGGKERVRGHLAMMRDEERDRCVRARHGKDAVE 164
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BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: A0A1V9YR16_9STRA (Swi3 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YR16_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.600e-13
Identity = 48/104 (46.15%), Postives = 59/104 (56.73%), Query Frame = 1 
Query:  130 AAPEEAATAKKVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKG-RGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDR 438
            AAP E A  KK  N    FS+ HL+  +G R VY+ FP+  +     G EA  LR LM  YKEW Y+LYPG+ FED   RTE +  +A    L+HELR  E  R
Sbjct:   51 AAPAEEAKPKKKRN---VFSDQHLLSSRGFRLVYEKFPEHFKEPVVEGMEALALRDLMTCYKEWAYELYPGLRFEDFVERTETIAKKAAVGELLHELRGIEAKR 151
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BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: M4BUG3_HYAAE (Swi3 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUG3_HYAAE)

HSP 1 Score: 77.4 bits (189), Expect = 5.150e-13
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 1 
Query:  145 AATAKKVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDRVLEAKYGREAVD 474
            A++      R     E+HL+  +G ++VY+ FP +      GREA  L  L+  YK+W Y LYPG+ FED   RTE L    + + LM E+R+ ER + +E + G++  D
Sbjct:   39 ASSTPSKKRRRNLLRESHLLSAEGFKKVYRTFPYQVSSTVSGREAPALASLIKMYKQWAYDLYPGLNFEDFVDRTETLAKGHQVQGLMAEMREKERRKRVERRCGKDEED 148
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BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: A0A2P4YEG9_9STRA (Swi3 domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YEG9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.530e-12
Identity = 44/110 (40.00%), Postives = 61/110 (55.45%), Query Frame = 1 
Query:  115 DSTGVAAPEEAATAKKVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDRVL 444
            D+   AAP    T K+  N      E+HLV   G ++V++ FP +      GREA+ L  LM  YK+W + LYPG+ FED   RTE LG   + + LM ELR+ E+ + L
Sbjct:   35 DAGNAAAP--VVTQKRRRN---LLRESHLVSADGFKKVHRTFPYQVSTDVSGREAQALASLMKMYKQWAFDLYPGLNFEDFIERTESLGKGHQVQGLMTELREKEKVKAL 139
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BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: A0A0P1APB5_PLAHL (Timeless-interacting protein isoform x3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APB5_PLAHL)

HSP 1 Score: 75.9 bits (185), Expect = 1.770e-12
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 1 
Query:  124 GVAAPEEAATAKKVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDRVL 444
            GV AP    T K+  N      E+HL+  +G ++V++ FP +      GREA+ L  L+  YK+W + LYPG+ FED   RTE LG   + + LM ELR+ ER + L
Sbjct:   38 GVTAP--VGTQKRQRN---LLRESHLISAEGFQKVHRTFPYQVSADVSGREAQALASLVKMYKQWAFDLYPGLNFEDFVERTETLGKGRQVQALMMELREKERLKYL 139
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BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: A0A6A3STA2_9STRA (Swi3 domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3STA2_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.820e-12
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 1 
Query:  163 VSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDRVLE 447
            V  R     E+HLV  +GL++V++ FP +      GREA+ L  L+  YK+W + LYPG+ FED   R E LG   + + L+ +LR+ E+ + LE
Sbjct:    7 VQRRRNLLRESHLVSAEGLKKVHRTFPYQVSADVSGREAQALASLIKMYKQWAFDLYPGLNFEDFVERAEALGKSHQVQGLVADLREKEKLKALE 101
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BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: A0A397E7Y0_9STRA (Swi3 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E7Y0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.030e-12
Identity = 42/94 (44.68%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:  160 KVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYK-GRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDR 438
            KV+ +   FSE HL+  +GL  VY  FP         G E E LR L+ AYKEW Y+LYPG+ FEDL  +TE L  +A   + + +LR  ER R
Sbjct:   48 KVTKKRATFSEQHLLGPRGLSLVYSTFPTHFNRAVTHGNEGEALRELITAYKEWAYELYPGLNFEDLVDKTEALAKKAAVSSFIADLRQQERKR 141
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BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: A0A484EHM7_BRELC (Swi3 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHM7_BRELC)

HSP 1 Score: 75.9 bits (185), Expect = 2.680e-12
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:  148 ATAKKVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTER 432
            A   K   R     E+HLV  +G ++V++ FP +      GREA+ L  L+  YK+W Y LYPG+ FED A RTE L    + + LM ELR+ ER
Sbjct:   61 APGTKQKKRRNLLRESHLVSAEGFKKVHRTFPYQVSADVSGREAQALASLIRMYKQWAYDLYPGLNFEDFAERTEMLSKGHQVQGLMTELREKER 155
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0P4_9PHAE1.490e-27881.34Swi3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FKE8_ECTSI1.110e-23072.68Swi3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CM34_9STRA4.900e-2151.33Swi3 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A1V9YR16_9STRA1.600e-1346.15Swi3 domain-containing protein n=1 Tax=Achlya hypo... [more]
M4BUG3_HYAAE5.150e-1336.36Swi3 domain-containing protein n=1 Tax=Hyaloperono... [more]
A0A2P4YEG9_9STRA1.530e-1240.00Swi3 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A0P1APB5_PLAHL1.770e-1240.19Timeless-interacting protein isoform x3 n=1 Tax=Pl... [more]
A0A6A3STA2_9STRA1.820e-1238.95Swi3 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A397E7Y0_9STRA2.030e-1244.68Swi3 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A484EHM7_BRELC2.680e-1242.11Swi3 domain-containing protein n=1 Tax=Bremia lact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1262contigEcto-sp13_S_contig1262:7901..10306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score674.1
Seed ortholog evalue5.9e-191
Seed eggNOG ortholog2880.D7FKE8
Preferred nameCSM3
Model size1761
KEGG koko:K10904,ko:K10998
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000075,GO:0000076,GO:0000077,GO:0000217,GO:0000228,GO:0000278,GO:0000280,GO:0000403,GO:0000785,GO:0000790,GO:0000819,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005657,GO:0005694,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0007064,GO:0007093,GO:0007346,GO:0007530,GO:0007531,GO:0007533,GO:0007534,GO:0008150,GO:0008152,GO:0008156,GO:0008284,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010453,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0016043,GO:0019219,GO:0019222,GO:0022402,GO:0022413,GO:0022414,GO:0030154,GO:0031298,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031494,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032502,GO:0032505,GO:0032991,GO:0033262,GO:0033554,GO:0034085,GO:0034087,GO:0034641,GO:0034645,GO:0035822,GO:0042127,GO:0043111,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043388,GO:0043570,GO:0043596,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044773,GO:0044774,GO:0045005,GO:0045132,GO:0045165,GO:0045595,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0048285,GO:0048478,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051099,GO:0051101,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071514,GO:0071515,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0098813,GO:0140013,GO:0140014,GO:1901360,GO:1901363,GO:1901576,GO:1903046,GO:1903047,GO:2000104,GO:2000112,GO:2000113,GO:2000241
Exons2
EggNOG free text desc.replication fork protection
EggNOG OGsKOG3004@1,KOG3004@2759
Ec32 ortholog descriptionReplication fork protection component Swi3
Ec32 orthologEc-12_002330.1
Cds size1761
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462673.6639388-CDS-Ecto-sp13_S_contig1262:7900..81761681462673.6639388-CDS-Ecto-sp13_S_contig1262:7900..8176Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1262 7901..8176 +
1681462673.6820223-CDS-Ecto-sp13_S_contig1262:8821..103061681462673.6820223-CDS-Ecto-sp13_S_contig1262:8821..10306Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1262 8822..10306 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1262.2167.1prot_Ecto-sp13_S_contig1262.2167.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1262 7901..10306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1262.2167.1

>prot_Ecto-sp13_S_contig1262.2167.1 ID=prot_Ecto-sp13_S_contig1262.2167.1|Name=mRNA_Ecto-sp13_S_contig1262.2167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=587bp
MSESEEERRPRPIGVADESDEDSGMERTDSNKRTKPGPDSTGVAAPEEAA
TAKKVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLM
VAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDRVLEA
KYGREAVDDVHAQEAARLAAKESKTAAAEGDREEEREDEELAGSRYAMEV
DGDGGYEGKSDRQVAAEGSAAAMSDQVRQRIEANRRLALDRLRLKKQEAA
VAAAAAAVATEKENDRGAVAVPAANDGSREVEDLEEDLMDVDGGGGPGDS
FDDDEAALADMEAEEMAARPVAAEASRGKNTLAEPGPAVVSTSPATTLAV
ESYETAGTVDEEPASPEPTIRENEAMEDAGSGASGANTAAAVVADDANDM
SPVSAPSDGVARREVRAAGAGCAGSVDEASATCSAAAAAAAGGGEPDTTA
GEESGGELPPASEPGAPDPGVGGGQERDGANDEAASLRTAAATGADGITG
GAKVDDAIWGGRDGGGGGAPEPVAAKGDEEGASFSSPAKCRAATAAASGL
PLSPLGSLFAGTDVSAEGGLAVAREPPGGLLSDENV*
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mRNA from alignment at Ecto-sp13_S_contig1262:7901..10306+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1262.2167.1 ID=mRNA_Ecto-sp13_S_contig1262.2167.1|Name=mRNA_Ecto-sp13_S_contig1262.2167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2406bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1262:7901..10306+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGAGTCTGAGGAAGAGCGCCGGCCTCGACCCATTGGCGTCGCAGA
CGAAAGCGATGAAGACAGCGGCATGGAGCGAACCGATTCTAACAAAAGGA
CCAAGCCTGGGCCGGATTCGACGGGGGTGGCGGCGCCAGAAGAGGCCGCC
ACGGCAAAGAAGGTCTCAAACAGGCCGCCCGCTTTCTCGGAGAACCACTT
GGTCAAGGAGAAAGGATTGCGGCAGGTCTACAAGGACTTCCCTCAAAAGT
GTCAGTACAAGGGCAGGGGACGCGAGGTAAAGCAGCTCTACTCTCTTTGA
TTTTTTAATTTTCGGGTGTCCGTTTTAGTATTGAGAGGCGTTCAGTTTCC
ACAGAAGGTGCAGTGCGGTCGCCGGTGTACTATTTCGTGAATGCAAGGTT
TAGGCTGGACCACAACGCCCCCAGGTTCTCCACGTTATCCCTCGTACCAG
TCACCCGCCTCGTGCTTTTTCTCTCGTGCTGAAATAAATATGCCCGCGAA
CTGCGGTGGAACATTGGGTGTCAGAGCAACTGGTATTGTCCCGCGCACAC
TTGCTGTGTGTAGGCGGGTAGGCGGCGAATATATTACACACATAGCAGTC
GGCCACATACCAGCAGCGGGCAAGTAGATTGCGCACCATATCACACTCTC
AAACGTTCCACCCCCATCGCCAATGACAGAACCCCCCCCCCCCCCCCCGT
ATCACTCCCGACGACGCAAGGTCAGTAGTCTAGCCATCAAACTAAGTACG
CCCCCTCCCCCCCCCCCCCCCCCCGTCAATCGGCACCCAGGCTGNNNNNN
NNNNAAGAAACCCCCCCCCCCCCCCCCCCTTCCCCCCCCGCCCCCCACAG
CTCACTCTCCCGCCCACCAAACAAAGTCCCCCCCCCCCCCCCCCCCCCCC
CCCCCGTCAATCGGCACCCAGGCTGAGTTCCTGCGAGGTCTGATGGTCGC
CTACAAGGAGTGGGGCTACCAGCTGTACCCAGGGGTCGCCTTCGAGGACC
TGGCAAGCCGGACGGAGAAGCTGGGCGGCAGGGCCCGCACCCGCAACCTT
ATGCACGAGCTCCGGGACACGGAGAGGGACCGCGTGCTGGAGGCCAAGTA
CGGCCGAGAGGCCGTAGACGACGTCCACGCGCAGGAGGCAGCAAGGCTCG
CCGCGAAGGAGAGCAAGACGGCGGCCGCCGAGGGGGACCGGGAAGAGGAG
CGCGAGGACGAGGAGCTCGCGGGTAGTCGGTACGCCATGGAGGTGGACGG
AGACGGGGGCTACGAGGGAAAAAGTGACCGTCAGGTCGCCGCCGAAGGGT
CTGCGGCGGCCATGTCGGACCAGGTACGGCAACGCATTGAGGCAAACCGC
CGGTTGGCGCTCGACCGACTGCGCTTGAAGAAACAAGAAGCGGCGGTTGC
GGCGGCGGCGGCGGCGGTGGCGACAGAAAAGGAGAACGACCGGGGTGCTG
TTGCCGTGCCCGCTGCGAACGACGGCAGCAGAGAAGTCGAGGATCTGGAG
GAGGATCTGATGGACGTAGATGGCGGCGGCGGGCCGGGCGACAGCTTCGA
TGACGACGAAGCCGCGCTGGCGGACATGGAGGCAGAGGAAATGGCGGCCC
GGCCGGTTGCTGCTGAGGCCTCACGGGGGAAGAACACCTTGGCGGAACCC
GGGCCTGCTGTCGTTTCCACGTCTCCTGCTACGACCTTGGCGGTGGAGAG
TTATGAGACTGCTGGTACCGTGGACGAGGAACCGGCGTCGCCGGAGCCGA
CGATACGAGAAAACGAGGCAATGGAGGACGCCGGAAGCGGAGCTTCGGGG
GCTAATACTGCTGCTGCCGTTGTTGCCGATGATGCCAACGACATGTCTCC
TGTTTCTGCCCCCTCTGATGGAGTTGCAAGACGGGAGGTACGTGCAGCAG
GCGCAGGGTGCGCCGGCAGCGTTGACGAAGCGTCGGCAACATGCTCTGCT
GCTGCTGCTGCTGCTGCAGGGGGTGGCGAGCCTGATACTACCGCGGGAGA
GGAGAGTGGCGGCGAGCTGCCTCCCGCTTCGGAGCCGGGCGCACCAGACC
CAGGCGTAGGCGGCGGGCAAGAGAGAGACGGTGCAAATGATGAAGCTGCC
TCATTGCGAACGGCGGCGGCGACAGGAGCGGATGGAATCACGGGTGGTGC
TAAGGTAGATGATGCGATTTGGGGCGGTCGTGATGGTGGCGGTGGTGGTG
CTCCAGAGCCTGTGGCGGCGAAAGGAGACGAGGAGGGGGCATCGTTCAGT
AGTCCTGCTAAGTGCAGGGCGGCGACGGCGGCGGCGAGCGGTTTGCCGCT
GTCGCCGCTCGGCAGCCTGTTCGCCGGTACTGATGTTTCTGCCGAGGGGG
GGCTGGCGGTGGCGAGGGAGCCGCCAGGAGGACTCCTTTCGGACGAAAAC
GTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1262:7901..10306+

>mRNA_Ecto-sp13_S_contig1262.2167.1 ID=mRNA_Ecto-sp13_S_contig1262.2167.1|Name=mRNA_Ecto-sp13_S_contig1262.2167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1761bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1262:7901..10306+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGAGTCTGAGGAAGAGCGCCGGCCTCGACCCATTGGCGTCGCAGA
CGAAAGCGATGAAGACAGCGGCATGGAGCGAACCGATTCTAACAAAAGGA
CCAAGCCTGGGCCGGATTCGACGGGGGTGGCGGCGCCAGAAGAGGCCGCC
ACGGCAAAGAAGGTCTCAAACAGGCCGCCCGCTTTCTCGGAGAACCACTT
GGTCAAGGAGAAAGGATTGCGGCAGGTCTACAAGGACTTCCCTCAAAAGT
GTCAGTACAAGGGCAGGGGACGCGAGGCTGAGTTCCTGCGAGGTCTGATG
GTCGCCTACAAGGAGTGGGGCTACCAGCTGTACCCAGGGGTCGCCTTCGA
GGACCTGGCAAGCCGGACGGAGAAGCTGGGCGGCAGGGCCCGCACCCGCA
ACCTTATGCACGAGCTCCGGGACACGGAGAGGGACCGCGTGCTGGAGGCC
AAGTACGGCCGAGAGGCCGTAGACGACGTCCACGCGCAGGAGGCAGCAAG
GCTCGCCGCGAAGGAGAGCAAGACGGCGGCCGCCGAGGGGGACCGGGAAG
AGGAGCGCGAGGACGAGGAGCTCGCGGGTAGTCGGTACGCCATGGAGGTG
GACGGAGACGGGGGCTACGAGGGAAAAAGTGACCGTCAGGTCGCCGCCGA
AGGGTCTGCGGCGGCCATGTCGGACCAGGTACGGCAACGCATTGAGGCAA
ACCGCCGGTTGGCGCTCGACCGACTGCGCTTGAAGAAACAAGAAGCGGCG
GTTGCGGCGGCGGCGGCGGCGGTGGCGACAGAAAAGGAGAACGACCGGGG
TGCTGTTGCCGTGCCCGCTGCGAACGACGGCAGCAGAGAAGTCGAGGATC
TGGAGGAGGATCTGATGGACGTAGATGGCGGCGGCGGGCCGGGCGACAGC
TTCGATGACGACGAAGCCGCGCTGGCGGACATGGAGGCAGAGGAAATGGC
GGCCCGGCCGGTTGCTGCTGAGGCCTCACGGGGGAAGAACACCTTGGCGG
AACCCGGGCCTGCTGTCGTTTCCACGTCTCCTGCTACGACCTTGGCGGTG
GAGAGTTATGAGACTGCTGGTACCGTGGACGAGGAACCGGCGTCGCCGGA
GCCGACGATACGAGAAAACGAGGCAATGGAGGACGCCGGAAGCGGAGCTT
CGGGGGCTAATACTGCTGCTGCCGTTGTTGCCGATGATGCCAACGACATG
TCTCCTGTTTCTGCCCCCTCTGATGGAGTTGCAAGACGGGAGGTACGTGC
AGCAGGCGCAGGGTGCGCCGGCAGCGTTGACGAAGCGTCGGCAACATGCT
CTGCTGCTGCTGCTGCTGCTGCAGGGGGTGGCGAGCCTGATACTACCGCG
GGAGAGGAGAGTGGCGGCGAGCTGCCTCCCGCTTCGGAGCCGGGCGCACC
AGACCCAGGCGTAGGCGGCGGGCAAGAGAGAGACGGTGCAAATGATGAAG
CTGCCTCATTGCGAACGGCGGCGGCGACAGGAGCGGATGGAATCACGGGT
GGTGCTAAGGTAGATGATGCGATTTGGGGCGGTCGTGATGGTGGCGGTGG
TGGTGCTCCAGAGCCTGTGGCGGCGAAAGGAGACGAGGAGGGGGCATCGT
TCAGTAGTCCTGCTAAGTGCAGGGCGGCGACGGCGGCGGCGAGCGGTTTG
CCGCTGTCGCCGCTCGGCAGCCTGTTCGCCGGTACTGATGTTTCTGCCGA
GGGGGGGCTGGCGGTGGCGAGGGAGCCGCCAGGAGGACTCCTTTCGGACG
AAAACGTCTAG
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