prot_Ecto-sp13_S_contig1262.2167.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1262.2167.1
Unique Nameprot_Ecto-sp13_S_contig1262.2167.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length587
Homology
BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: A0A6H5L0P4_9PHAE (Swi3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0P4_9PHAE)

HSP 1 Score: 780 bits (2015), Expect = 1.490e-278
Identity = 484/595 (81.34%), Postives = 504/595 (84.71%), Query Frame = 0
Query:    1 MSESEEERRPRPIGVADESDEDSGMERTDS---NKRTKPGPDSTGVAAPEEAATAKKVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDREEEREDEELAGSRYAMEVDGDGGYEGKSDRQVAAEGSAAAMSDQVRQRIEANRRLALDRLRLKKQEAXXXXXXXXXXXEKENDRGAVAVP-AANDGSREVEDLEEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEASRGKNTLAEPGPAVVSTSPATTLAVESYETAGTVDEEPASPEPTIRENEAMEDAGSGASGANTAAAVVADDANDMSPVSAPSDGVARREVRAAGAGCAGSVDEASATCSAXXXXXXXXXXXXXXXXXXSGGELPPASEPGAPDPGVGGGQERDGANDEAASLRTAAATGA-----DGITGGAKVDDAIWGGRDGXXXXAPEPVAAKGDEEGASFSSPAKCRAATAAASGLPLSPLGSLFAGTDVSAEGGLAVAREPPGGLLSDENV 586
            MSESEEERRPRPIGVAD S EDSGMERTD+   N  T+PG DSTGVAAPEE  TAKKVSNRPPAFSENHLVKEKGL QVYKDFPQKC+YKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKL GRARTR+LM ELRDTERDRVLEAK+GREAVDDVH+QEAARLAAKESKTAAAEGDR EEREDEE AGSRY MEVDGDGG EGKSDRQVAAEGSAAAMS+QVRQRIEANRRLALDRLR KK EA   XXXXXXXX             AANDGSREVEDLEEDLMDVDGGGGPGD FDDDEAALADME E+MAARPVAAEASR KNT+AEPGPAVVSTSPA+TLAVES ETAG VDEE A PEP+IRE+EAMED GS ASGANTAAAVVADDA D +PVSA +DGVAR   RAAGAGCAG+VDEA AT +A                  SGGELPPASEPG P PGVGGGQ+RDGANDEAASLRT  A        DGITGGAKVDDA+      XXXXAPEPVAAKGDEEGASFSSPAKCR+ATAAASGLPLSPLG+LFAGTDVSAEGGLAV REP GGL SDENV
Sbjct:    1 MSESEEERRPRPIGVADGSGEDSGMERTDAAGANNGTEPGLDSTGVAAPEEVTTAKKVSNRPPAFSENHLVKEKGLWQVYKDFPQKCRYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLAGRARTRSLMRELRDTERDRVLEAKFGREAVDDVHSQEAARLAAKESKTAAAEGDRAEEREDEEFAGSRYTMEVDGDGGDEGKSDRQVAAEGSAAAMSEQVRQRIEANRRLALDRLRSKKHEASVAXXXXXXXXXXXXXXXXXXXXXAANDGSREVEDLEEDLMDVDGGGGPGDGFDDDEAALADMETEQMAARPVAAEASRRKNTVAEPGPAVVSTSPASTLAVESDETAGAVDEELAPPEPSIREDEAMEDTGSRASGANTAAAVVADDAKDPAPVSAAADGVARGGARAAGAGCAGNVDEAPATWAADAAGGGEPDATAGEE---SGGELPPASEPGTPGPGVGGGQDRDGANDEAASLRTMTAXXXXXXXXDGITGGAKVDDAVLXXXX-XXXXAPEPVAAKGDEEGASFSSPAKCRSATAAASGLPLSPLGTLFAGTDVSAEGGLAVVREPLGGLFSDENV 591          
BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: D7FKE8_ECTSI (Swi3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKE8_ECTSI)

HSP 1 Score: 656 bits (1693), Expect = 1.110e-230
Identity = 431/593 (72.68%), Postives = 444/593 (74.87%), Query Frame = 0
Query:    1 MSESEEERRPRPIGVADESDEDSGMERTDS---NKRTKPGPDSTGVAAPEEAATAKKVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDREEEREDEELAGSRYAMEVDGDGGYEGKSDRQVAAEGSAAAMSDQVRQRIEANRRLALDRLRLKKQEAXXXXXXXXXXXEKENDRGAVAVPAANDGSREVEDLEEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEASRGKNTLAEPGPAVVSTSPATTLAVESYETAGTVDEEPASPEPTIRENEAMEDAGSGASGANTAAAVVADDANDMSPVSAPSDGVARREVRAAGAGCAGSVDEASATCSAXXXXXXXXXXXXXXXXXXSGGELPPASEPGAPDPGVGGGQERDGANDEAASLRT---AAATGADGITGGAKVDDAIWGGRDGXXXXAPEPVAAKGDEEGASFSSPAKCRAATAA-ASGLPLSPLGSLFAGTDVSAEGGLAVAREPPGGLLSDENV 586
            MSESEEERRPRPIGVAD SDEDSGMERTD+   N  ++PG DSTGVAAPEEA TAKKVSNRPPAFSENHLVKEKGL Q+YKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLA RTEKLGGRARTR+L+ ELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDR EEREDEELAGSRYAMEVDGDGG EGKSDRQVAAEGSAA MSDQVRQRIEANRRLALDRLRLKKQE XXXXXXXXXXX              NDGSREVED EEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEASRGKNT+AEPGPA V TSP +TLAVE                                                             R  RAAGAGCAGSVDEASA C+                   SGGELPPASEP AP PGVGGG+ERDGANDEAASL T   A+A GADGITGGAK+DDA+ G    XXXX             ASFSSPAKCR      ASGLPLSPLGSLFAGTDVSAEGGLAVAREP GGL SDENV
Sbjct:    1 MSESEEERRPRPIGVADGSDEDSGMERTDAAGANNGSEPGRDSTGVAAPEEATTAKKVSNRPPAFSENHLVKEKGLWQIYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLACRTEKLGGRARTRSLLRELRDTERDRVLEAKYGREAVDDVHAQEAARLAAKESKTAAAEGDRVEEREDEELAGSRYAMEVDGDGGDEGKSDRQVAAEGSAATMSDQVRQRIEANRRLALDRLRLKKQEXXXXXXXXXXXX---XXXXXXXXXXXNDGSREVEDPEEDLMDVDGGGGPGDSFDDDEAALADMEAEEMAARPVAAEASRGKNTVAEPGPAAVVTSPPSTLAVE-------------------------------------------------------------RGARAAGAGCAGSVDEASAKCAVAAARSGEPGTTAGEE---SGGELPPASEPSAPAPGVGGGRERDGANDEAASLGTTAAASAAGADGITGGAKLDDAVLGXXX-XXXXXXXXXXXXXXXXXASFSSPAKCRXXXXXXASGLPLSPLGSLFAGTDVSAEGGLAVAREPLGGLFSDENV 525          
BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: A0A836CM34_9STRA (Swi3 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM34_9STRA)

HSP 1 Score: 108 bits (270), Expect = 4.900e-21
Identity = 58/113 (51.33%), Postives = 76/113 (67.26%), Query Frame = 0
Query:   47 EEAATAKK-VSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDRVLEAKYGREAVD 158
            EE   AKK    R P FSE  LV+ KGL ++  DFP++ +   +G+E EFL  LM  YKEWGYQLYP +AFEDLA R E LGG+ R R  +  +RD ERDR + A++G++AV+
Sbjct:   52 EEGKPAKKPAKRRAPPFSEVQLVEGKGLMKIRDDFPKRLKPCVKGKEREFLSRLMFLYKEWGYQLYPSLAFEDLAVRIETLGGKERVRGHLAMMRDEERDRCVRARHGKDAVE 164          
BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: A0A1V9YR16_9STRA (Swi3 domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YR16_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.600e-13
Identity = 48/104 (46.15%), Postives = 59/104 (56.73%), Query Frame = 0
Query:   44 AAPEEAATAKKVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKG-RGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDR 146
            AAP E A  KK  N    FS+ HL+  +G R VY+ FP+  +     G EA  LR LM  YKEW Y+LYPG+ FED   RTE +  +A    L+HELR  E  R
Sbjct:   51 AAPAEEAKPKKKRN---VFSDQHLLSSRGFRLVYEKFPEHFKEPVVEGMEALALRDLMTCYKEWAYELYPGLRFEDFVERTETIAKKAAVGELLHELRGIEAKR 151          
BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: M4BUG3_HYAAE (Swi3 domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BUG3_HYAAE)

HSP 1 Score: 77.4 bits (189), Expect = 5.150e-13
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 0
Query:   49 AATAKKVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDRVLEAKYGREAVD 158
            A++      R     E+HL+  +G ++VY+ FP +      GREA  L  L+  YK+W Y LYPG+ FED   RTE L    + + LM E+R+ ER + +E + G++  D
Sbjct:   39 ASSTPSKKRRRNLLRESHLLSAEGFKKVYRTFPYQVSSTVSGREAPALASLIKMYKQWAYDLYPGLNFEDFVDRTETLAKGHQVQGLMAEMREKERRKRVERRCGKDEED 148          
BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: A0A2P4YEG9_9STRA (Swi3 domain-containing protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YEG9_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.530e-12
Identity = 44/110 (40.00%), Postives = 61/110 (55.45%), Query Frame = 0
Query:   39 DSTGVAAPEEAATAKKVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDRVL 148
            D+   AAP    T K+  N      E+HLV   G ++V++ FP +      GREA+ L  LM  YK+W + LYPG+ FED   RTE LG   + + LM ELR+ E+ + L
Sbjct:   35 DAGNAAAP--VVTQKRRRN---LLRESHLVSADGFKKVHRTFPYQVSTDVSGREAQALASLMKMYKQWAFDLYPGLNFEDFIERTESLGKGHQVQGLMTELREKEKVKAL 139          
BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: A0A0P1APB5_PLAHL (Timeless-interacting protein isoform x3 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1APB5_PLAHL)

HSP 1 Score: 75.9 bits (185), Expect = 1.770e-12
Identity = 43/107 (40.19%), Postives = 61/107 (57.01%), Query Frame = 0
Query:   42 GVAAPEEAATAKKVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDRVL 148
            GV AP    T K+  N      E+HL+  +G ++V++ FP +      GREA+ L  L+  YK+W + LYPG+ FED   RTE LG   + + LM ELR+ ER + L
Sbjct:   38 GVTAP--VGTQKRQRN---LLRESHLISAEGFQKVHRTFPYQVSADVSGREAQALASLVKMYKQWAFDLYPGLNFEDFVERTETLGKGRQVQALMMELREKERLKYL 139          
BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: A0A6A3STA2_9STRA (Swi3 domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3STA2_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.820e-12
Identity = 37/95 (38.95%), Postives = 56/95 (58.95%), Query Frame = 0
Query:   55 VSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDRVLE 149
            V  R     E+HLV  +GL++V++ FP +      GREA+ L  L+  YK+W + LYPG+ FED   R E LG   + + L+ +LR+ E+ + LE
Sbjct:    7 VQRRRNLLRESHLVSAEGLKKVHRTFPYQVSADVSGREAQALASLIKMYKQWAFDLYPGLNFEDFVERAEALGKSHQVQGLVADLREKEKLKALE 101          
BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: A0A397E7Y0_9STRA (Swi3 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397E7Y0_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 2.030e-12
Identity = 42/94 (44.68%), Postives = 54/94 (57.45%), Query Frame = 0
Query:   54 KVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYK-GRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDR 146
            KV+ +   FSE HL+  +GL  VY  FP         G E E LR L+ AYKEW Y+LYPG+ FEDL  +TE L  +A   + + +LR  ER R
Sbjct:   48 KVTKKRATFSEQHLLGPRGLSLVYSTFPTHFNRAVTHGNEGEALRELITAYKEWAYELYPGLNFEDLVDKTEALAKKAAVSSFIADLRQQERKR 141          
BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Match: A0A484EHM7_BRELC (Swi3 domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EHM7_BRELC)

HSP 1 Score: 75.9 bits (185), Expect = 2.680e-12
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 0
Query:   50 ATAKKVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLMVAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTER 144
            A   K   R     E+HLV  +G ++V++ FP +      GREA+ L  L+  YK+W Y LYPG+ FED A RTE L    + + LM ELR+ ER
Sbjct:   61 APGTKQKKRRNLLRESHLVSAEGFKKVHRTFPYQVSADVSGREAQALASLIRMYKQWAYDLYPGLNFEDFAERTEMLSKGHQVQGLMTELREKER 155          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1262.2167.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0P4_9PHAE1.490e-27881.34Swi3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FKE8_ECTSI1.110e-23072.68Swi3 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A836CM34_9STRA4.900e-2151.33Swi3 domain-containing protein n=1 Tax=Tribonema m... [more]
A0A1V9YR16_9STRA1.600e-1346.15Swi3 domain-containing protein n=1 Tax=Achlya hypo... [more]
M4BUG3_HYAAE5.150e-1336.36Swi3 domain-containing protein n=1 Tax=Hyaloperono... [more]
A0A2P4YEG9_9STRA1.530e-1240.00Swi3 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A0P1APB5_PLAHL1.770e-1240.19Timeless-interacting protein isoform x3 n=1 Tax=Pl... [more]
A0A6A3STA2_9STRA1.820e-1238.95Swi3 domain-containing protein n=1 Tax=Phytophthor... [more]
A0A397E7Y0_9STRA2.030e-1244.68Swi3 domain-containing protein (Fragment) n=1 Tax=... [more]
A0A484EHM7_BRELC2.680e-1242.11Swi3 domain-containing protein n=1 Tax=Bremia lact... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012923Chromosome segregation in meiosis protein 3PFAMPF07962Swi3coord: 63..143
e-value: 1.7E-18
score: 66.4
IPR040038TIPIN/Csm3/Swi3PANTHERPTHR13220TIMELESS INTERACTING-RELATEDcoord: 22..260
NoneNo IPR availablePRODOMPD089639coord: 45..141
e-value: 6.0E-8
score: 141.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1262contigEcto-sp13_S_contig1262:7901..10306 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1262.2167.1mRNA_Ecto-sp13_S_contig1262.2167.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1262 7901..10306 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1262.2167.1 ID=prot_Ecto-sp13_S_contig1262.2167.1|Name=mRNA_Ecto-sp13_S_contig1262.2167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=587bp
MSESEEERRPRPIGVADESDEDSGMERTDSNKRTKPGPDSTGVAAPEEAA
TAKKVSNRPPAFSENHLVKEKGLRQVYKDFPQKCQYKGRGREAEFLRGLM
VAYKEWGYQLYPGVAFEDLASRTEKLGGRARTRNLMHELRDTERDRVLEA
KYGREAVDDVHAQEAARLAAKESKTAAAEGDREEEREDEELAGSRYAMEV
DGDGGYEGKSDRQVAAEGSAAAMSDQVRQRIEANRRLALDRLRLKKQEAA
VAAAAAAVATEKENDRGAVAVPAANDGSREVEDLEEDLMDVDGGGGPGDS
FDDDEAALADMEAEEMAARPVAAEASRGKNTLAEPGPAVVSTSPATTLAV
ESYETAGTVDEEPASPEPTIRENEAMEDAGSGASGANTAAAVVADDANDM
SPVSAPSDGVARREVRAAGAGCAGSVDEASATCSAAAAAAAGGGEPDTTA
GEESGGELPPASEPGAPDPGVGGGQERDGANDEAASLRTAAATGADGITG
GAKVDDAIWGGRDGGGGGAPEPVAAKGDEEGASFSSPAKCRAATAAASGL
PLSPLGSLFAGTDVSAEGGLAVAREPPGGLLSDENV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012923Csm3
IPR040038TIPIN/Csm3/Swi3