prot_Ecto-sp13_S_contig12616.2163.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12616.2163.1
Unique Nameprot_Ecto-sp13_S_contig12616.2163.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length326
Homology
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: D7FJT9_ECTSI (Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT9_ECTSI)

HSP 1 Score: 395 bits (1014), Expect = 2.690e-125
Identity = 223/342 (65.20%), Postives = 251/342 (73.39%), Query Frame = 0
Query:    1 MQALCAIHGIVSSEDQHTRELVISNGTPGLRHLLVSSH-LGLREKTCQVICGITTGNKAQIQAVTEASIIPTLIQLLADVNHHIRRYAALAISNVTELGDPEEVKGWIPLLFILLENDTQGILKVSEILEKFLKVVPDSDAWRRLQHLLSSSGTKVREKTCDVIEYITLGNKKQSRAAIEAGIVPVLIKLLADVNYGIRLGAASVISKVIEVGEAEEARGWIPLLFILLENGETQDVPLVSKILTKLLKVVPDSNTWRRFRHLLSSSNTAVRDRACRVIDCITWGNKEQTRAAIEAGIVPVLIKLL----------------VIEVGEPEEARGWIPLLLSL 325
            ++ L A++GIVSSEDQHT+ L+ SN  P L HLLVSSH   LREKTCQVIC ITTG + QIQAV EA IIPTLIQ LADVN  IRRYAA AISNV E GDPEEVKGWIPLLFILLE+DTQGIL+V  ILEKFLKVVP SDAWR  + LL+S  T V  + C  I  IT GNKKQSRAAIEAGIVPVLIKLLAD N   R  AAS IS V E G+ EE +GWIPLLFILLE+ +TQ +  V  IL K LKVVP S+ WRR R LLSSS+  VR++ C +I  +T  NKEQ+RAAIEAGIVPVLI+LL                V E  EP+E RGWIP+LL+L
Sbjct:  492 LEVLWAMNGIVSSEDQHTQVLIDSNVLPRLHHLLVSSHHQNLREKTCQVICRITTGREEQIQAVIEAGIIPTLIQFLADVNSDIRRYAASAISNVAEFGDPEEVKGWIPLLFILLESDTQGILRVFGILEKFLKVVPHSDAWRPFRSLLNSPNTVVCGRACRAIHSITWGNKKQSRAAIEAGIVPVLIKLLADANPVFRYYAASAISNVAEFGDPEEVKGWIPLLFILLES-DTQGILRVFGILEKFLKVVPASDAWRRLRDLLSSSDPKVREKTCEIIHKVTRCNKEQSRAAIEAGIVPVLIQLLADGNPDIPRNPASVSNVTEEDEPKEVRGWIPVLLAL 832          
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: D7FJT8_ECTSI (Importin alpha-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT8_ECTSI)

HSP 1 Score: 302 bits (773), Expect = 2.430e-91
Identity = 184/354 (51.98%), Postives = 221/354 (62.43%), Query Frame = 0
Query:    1 MQALCAIHGIVSSEDQHTRELVISNGTPGLRHLLVSSHLGLREKTCQVICGITTGNKAQIQAVTEASIIPTLIQLLADV-NHHIRRYAALAISNVTELGDPEEVKGWIPLLFILLE-NDTQGILKVSEILEKFLKVVPDSDAWRRLQHLLSSSGTKVREKTCDVIEYITLGNKKQSRAAIEAGIVPVLIKLLADVNYGIRLGAASVISKVIEVGEAEEARGWIPLLFILLENGETQDVPLVSKILTKLLKVVPDSNTWRRFRHLLSSSNTAVRDRACRVIDCITWGNKEQTRAAIEAGIVPVLIKLL---------------------------VIEVGEPEEARGWIPLLLSL 325
            +++L AI  I SS D+H +ELV SN  P LR LL SSH  LREKTCQVIC ITTG+K Q QAV EA II  +I +L    N  +  +     S    +G PEE+  WIP L  LL   + Q I     + ++  KVVPDS  W+RLQHLLSSS T+V EK C VI  IT GNK+Q+RAAIEAGI+PVLI+LL + N  IR  AAS IS + E+GE EE R WIPLL  LLE+   Q V  VSKIL  +L+V PDS+ WRR   LLSSS+  VR++ CRVI  IT GNKEQTRA I+AG+VPVLI+LL                             E G+PEE RGWIP L+SL
Sbjct:  523 IKSLRAISTIASSSDRHKQELVNSNVLPRLRDLLSSSHQMLREKTCQVICRITTGSKEQTQAVIEAGIILAVIHILPSTRNLLVGSHIQTMFSRAIVVGRPEEMMEWIPPLVDLLGIGNFQNIPLALWVFKQIAKVVPDSHGWQRLQHLLSSSDTEVCEKACRVIHRITSGNKEQARAAIEAGIIPVLIQLLPNANPYIRSDAASAISNITELGEPEEVRRWIPLLLGLLEDCNIQSVVGVSKILDHILQVDPDSDAWRRLLDLLSSSDAEVREKTCRVIHKITEGNKEQTRAIIDAGVVPVLIQLLPNVKYYIRWVLPLVVDPPQDAASVILSATEEGKPEEVRGWIPPLVSL 876          
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: D7FJT7_ECTSI (Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT7_ECTSI)

HSP 1 Score: 239 bits (609), Expect = 1.430e-68
Identity = 146/305 (47.87%), Postives = 184/305 (60.33%), Query Frame = 0
Query:   56 NKAQIQAVTEASIIPTLIQLLADVNHHIRRYAALAISNV------------------TELGDPEEVKGWIPLLFILLENDTQGILKVSEILEKFLKVVPDSDAWRRLQHLLSSSGTKVREKTCDVIEYITLGNKKQSRAAIEAGIVPVLIKLLADVNYGIRLGAASVISKVIEVGEAEEARGWIPLLFILLENGETQDVPLVSKILTKLLKVVPDSNTWRRFRHLLSSSNTAVRDRACRVIDCITWGNKEQTRAAIEAGIVPVLIKLLV-----------------IEVGEPEEARGWIPLLLSL 325
            N+  +QAV  A +   L++LL   +  ++  A  AI+ +                  TE+G  E+V+ W+PLL  LLEND   ++          +V PDSDAWRRL+HLLSSS T+VRE TC VI  ITLGNK+Q+RA IEAGIVP LI+LL+D+N   R   ASV S   EVGE EE   W+PLL  LL+N +TQ +  V  IL  +L+VV DS+ W+  R LLSS NT VRDR C+VI  IT G+KEQTRA +EAGIVPVLI+LL                   ++GE EE R  IPLLLSL
Sbjct:  470 NREMVQAVAGAEVCQRLVELLDHTSPAVQMQALFAINGIVSSEDQHTRIVASVIRIATEVGGLEDVRKWVPLLLNLLENDGAQVI---------FEVDPDSDAWRRLRHLLSSSNTEVRENTCQVIRRITLGNKEQTRAMIEAGIVPALIQLLSDLNPDTRRYVASV-SNATEVGEPEEVGRWVPLLLDLLQNDDTQLLVKVLTILEIILQVVRDSDAWQPLRRLLSSPNTKVRDRTCQVIHRITLGSKEQTRAMVEAGIVPVLIQLLADVNYDIRSHAASAISNATKLGESEEVRRRIPLLLSL 764          
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: A0A5B6Z4Y8_DAVIN (Importin subunit alpha n=5 Tax=asterids TaxID=71274 RepID=A0A5B6Z4Y8_DAVIN)

HSP 1 Score: 58.2 bits (139), Expect = 9.590e-6
Identity = 49/188 (26.06%), Postives = 82/188 (43.62%), Query Frame = 0
Query:    3 ALCAIHGIVSSEDQHTRELVISNGTPGLRHLLVSSHL-GLREKTCQVICGITTGNKAQIQAVTEASIIPTLIQLLADVNHHIRRYAALAISNVTELGDPEEVK-----GWI-PLLFILLENDTQGILKVSEILEKFLKV-------------------VPDSDAWRRLQHLLSSSGTKVREKTCDVIE 164
            AL  +  IV+ +D  T+ ++ +   P L  LL  +H   ++++ C  I  IT GN+ QIQAV EASII  L+ LL +                   G  E+++     G I PL  +L+  D + +    E LE  LKV                   + + D   ++++L +    ++ EK   ++E
Sbjct:  307 ALRTVGNIVTGDDAQTQFMIDNQVLPCLFQLLTQNHKKSIKKEACWTISNITAGNRGQIQAVIEASIILPLVHLLQNAEFXXXXXXXXXXXXXXXXGSNEQIRFLASQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGMNGGINIYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILE 494          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FJT9_ECTSI2.690e-12565.20Importin alpha-1 subunit (Karyopherin alpha-1 subu... [more]
D7FJT8_ECTSI2.430e-9151.98Importin alpha-like protein n=1 Tax=Ectocarpus sil... [more]
D7FJT7_ECTSI1.430e-6847.87Importin alpha-1 subunit (Karyopherin alpha-1 subu... [more]
A0A5B6Z4Y8_DAVIN9.590e-626.06Importin subunit alpha n=5 Tax=asterids TaxID=7127... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000225ArmadilloSMARTSM00185arm_5coord: 285..324
e-value: 110.0
score: 5.3
coord: 13..54
e-value: 30.0
score: 9.5
coord: 56..96
e-value: 1.2E-5
score: 34.8
coord: 170..210
e-value: 4.3
score: 16.0
IPR000225ArmadilloPFAMPF00514Armcoord: 56..95
e-value: 5.9E-6
score: 26.1
coord: 170..206
e-value: 2.0E-4
score: 21.3
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 134..252
e-value: 8.2E-17
score: 62.7
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 1..133
e-value: 2.2E-25
score: 91.0
NoneNo IPR availableGENE3D1.25.10.110coord: 253..313
e-value: 6.9E-10
score: 40.9
NoneNo IPR availablePANTHERPTHR23316IMPORTIN ALPHAcoord: 134..219
coord: 3..107
NoneNo IPR availablePANTHERPTHR23316:SF8IMPORTIN SUBUNIT ALPHA-7coord: 3..107
NoneNo IPR availablePANTHERPTHR23316:SF8IMPORTIN SUBUNIT ALPHA-7coord: 258..305
coord: 134..219
NoneNo IPR availablePANTHERPTHR23316IMPORTIN ALPHAcoord: 258..305
IPR021133HEAT, type 2PROSITEPS50077HEAT_REPEATcoord: 182..218
score: 9.815
IPR021133HEAT, type 2PROSITEPS50077HEAT_REPEATcoord: 68..104
score: 10.489
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 2..305

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12616contigEcto-sp13_S_contig12616:1611..4538 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12616.2163.1mRNA_Ecto-sp13_S_contig12616.2163.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12616 709..4993 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12616.2163.1 ID=prot_Ecto-sp13_S_contig12616.2163.1|Name=mRNA_Ecto-sp13_S_contig12616.2163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=326bp
MQALCAIHGIVSSEDQHTRELVISNGTPGLRHLLVSSHLGLREKTCQVIC
GITTGNKAQIQAVTEASIIPTLIQLLADVNHHIRRYAALAISNVTELGDP
EEVKGWIPLLFILLENDTQGILKVSEILEKFLKVVPDSDAWRRLQHLLSS
SGTKVREKTCDVIEYITLGNKKQSRAAIEAGIVPVLIKLLADVNYGIRLG
AASVISKVIEVGEAEEARGWIPLLFILLENGETQDVPLVSKILTKLLKVV
PDSNTWRRFRHLLSSSNTAVRDRACRVIDCITWGNKEQTRAAIEAGIVPV
LIKLLVIEVGEPEEARGWIPLLLSL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR011989ARM-like
IPR021133HEAT_type_2
IPR016024ARM-type_fold