mRNA_Ecto-sp13_S_contig12616.2163.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: D7FJT9_ECTSI (Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT9_ECTSI) HSP 1 Score: 565 bits (1455), Expect = 2.430e-186 Identity = 323/513 (62.96%), Postives = 365/513 (71.15%), Query Frame = 3
Query: 294 VLTNSCAALGYLLAPRLETS----LNPRVNREIVQVAAGAEVCQRLGELLHHTSPTVQMQALCAIHGIVSSEDQHTRELVISNGTPGLRHLLVSSH-LGLREKTCQVICGITTGNKAQIQAVTEASIIPTLIQLLADVNHHIRRYAALAISNVTELGDPEEVKGWIPLLFILLENDTQGILKVSEILEKFLKVVPDSDAWRRLQHLLSSSGTKVREKTCDVIEYITLGNKKQSRAAIEAGIVPVLIKLLADVNYGIRLGAASVISKVIEVGEAEEARGWIPLLFILLENGETQDVPLVSKILTKLLKVVPDSNTWRRFRHLLSSSNTAVRDRACRVIDCITWGNKEQTRAAIEAGIVPVLIKLL----------------VIEVGEPEEARGWIPLLLSL*ENFDIQSIVGVSEILEKVLKVVPDSNTWRRFRHLLSSSNTAVRDRACRVIDRITRGNKEQTRAAIEAGIVPVLIKLLADRDYDIRPHAASALSKVIEVGEPEEARGWIPLLL 1769
VL N+CAAL YL AP LE S + ++RE+VQ GA VCQRL ELL H SP V ++ L A++GIVSSEDQHT+ L+ SN P L HLLVSSH LREKTCQVIC ITTG + QIQAV EA IIPTLIQ LADVN IRRYAA AISNV E GDPEEVKGWIPLLFILLE+DTQGIL+V ILEKFLKVVP SDAWR + LL+S T V + C I IT GNKKQSRAAIEAGIVPVLIKLLAD N R AAS IS V E G+ EE +GWIPLLFILLE+ +TQ + V IL K LKVVP S+ WRR R LLSSS+ VR++ C +I +T NKEQ+RAAIEAGIVPVLI+LL V E EP+E RGWIP+LL+L E D Q I+G EIL L+ VP S+ WR HLLSSSNT VR +AC V IT NKEQ RA +EAGIVPVLIK LADRD DI+ HAASA+S VIE+ E EE R W+ LL
Sbjct: 434 VLRNACAALRYLCAPVLEASFLAGIGALMHREMVQAVVGAGVCQRLVELLDHASPAVHLEVLWAMNGIVSSEDQHTQVLIDSNVLPRLHHLLVSSHHQNLREKTCQVICRITTGREEQIQAVIEAGIIPTLIQFLADVNSDIRRYAASAISNVAEFGDPEEVKGWIPLLFILLESDTQGILRVFGILEKFLKVVPHSDAWRPFRSLLNSPNTVVCGRACRAIHSITWGNKKQSRAAIEAGIVPVLIKLLADANPVFRYYAASAISNVAEFGDPEEVKGWIPLLFILLES-DTQGILRVFGILEKFLKVVPASDAWRRLRDLLSSSDPKVREKTCEIIHKVTRCNKEQSRAAIEAGIVPVLIQLLADGNPDIPRNPASVSNVTEEDEPKEVRGWIPVLLALLEIDDTQVIIGALEILGITLQAVPHSDAWRWLCHLLSSSNTKVRYKACEVTRWITTVNKEQARAVVEAGIVPVLIKQLADRDSDIQRHAASAISNVIELRESEEIRRWVSRLL 945
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: D7FJT8_ECTSI (Importin alpha-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT8_ECTSI) HSP 1 Score: 346 bits (888), Expect = 3.030e-104 Identity = 216/430 (50.23%), Postives = 262/430 (60.93%), Query Frame = 3
Query: 294 VLTNSCAALGYLLAPRLETSLNPRVNREIVQVAAGAEVCQRLGELLHHTSPT-VQMQALCAIHGIVSSEDQHTRELVISNGTPGLRHLLVSSHLGLREKTCQVICGITTGNKAQIQAVTEASIIPTLIQLLADV-NHHIRRYAALAISNVTELGDPEEVKGWIPLLFILLE-NDTQGILKVSEILEKFLKVVPDSDAWRRLQHLLSSSGTKVREKTCDVIEYITLGNKKQSRAAIEAGIVPVLIKLLADVNYGIRLGAASVISKVIEVGEAEEARGWIPLLFILLENGETQDVPLVSKILTKLLKVVPDSNTWRRFRHLLSSSNTAVRDRACRVIDCITWGNKEQTRAAIEAGIVPVLIKLL---------------------------VIEVGEPEEARGWIPLLLSL*ENFDIQSIVGVSEILEKVLK 1493
VL N+C AL + R + VQ A VCQRL L+ H SPT V++++L AI I SS D+H +ELV SN P LR LL SSH LREKTCQVIC ITTG+K Q QAV EA II +I +L N + + S +G PEE+ WIP L LL + Q I + ++ KVVPDS W+RLQHLLSSS T+V EK C VI IT GNK+Q+RAAIEAGI+PVLI+LL + N IR AAS IS + E+GE EE R WIPLL LLE+ Q V VSKIL +L+V PDS+ WRR LLSSS+ VR++ CRVI IT GNKEQTRA I+AG+VPVLI+LL E G+PEE RGWIP L+SL EN ++ I+ V EILEKVL+
Sbjct: 468 VLRNTCTALRRVCISRWNNNSTQPSKHLRVQAVIEAGVCQRLVRLISHDSPTTVKIKSLRAISTIASSSDRHKQELVNSNVLPRLRDLLSSSHQMLREKTCQVICRITTGSKEQTQAVIEAGIILAVIHILPSTRNLLVGSHIQTMFSRAIVVGRPEEMMEWIPPLVDLLGIGNFQNIPLALWVFKQIAKVVPDSHGWQRLQHLLSSSDTEVCEKACRVIHRITSGNKEQARAAIEAGIIPVLIQLLPNANPYIRSDAASAISNITELGEPEEVRRWIPLLLGLLEDCNIQSVVGVSKILDHILQVDPDSDAWRRLLDLLSSSDAEVREKTCRVIHKITEGNKEQTRAIIDAGVVPVLIQLLPNVKYYIRWVLPLVVDPPQDAASVILSATEEGKPEEVRGWIPPLVSLLENDNMTFILNVLEILEKVLE 897
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: D7FJT7_ECTSI (Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT7_ECTSI) HSP 1 Score: 321 bits (823), Expect = 6.840e-96 Identity = 204/418 (48.80%), Postives = 247/418 (59.09%), Query Frame = 3
Query: 294 VLTNSCAALGYLLAPRLETSLNPRVNREIVQVAAGAEVCQRLGELLHHTSPTVQMQALCAIHGIVSSEDQHTRELVISNGTPGLRHLLVSSHLGLREKTCQVICGITTGNKAQIQAVTEASIIPTLIQLLADVNHHIRRYAALAISNVTELGDPEEVKGWIPLLFILLENDTQGILKVSEILEKFLKVVPDSDAWRRLQHLLSSSGTKVREKTCDVIEYITLGNKKQSRAAIEAGIVPVLIKLLADVNYGIRLGAASVISKVIEVGEAEEARGWIPLLFILLENGETQDVPLVSKILTKLLKVVPDSNTWRRFRHLLSSSNTAVRDRACRVIDCITWGNKEQTRAAIEAGIVPVLIKLLV-----------------IEVGEPEEARGWIPLLLSL*EN-FDIQSIVGVSEILEKVLK 1493
VLTNSCAALG L PRL TSL PRVNRE+VQ AGAEVCQRL ELL HTSP VQMQAL AI+GIVSSEDQHTR I+ ++I++ TE+G E+V+ W+PLL LLEND ++ +V PDSDAWRRL+HLLSSS T+VRE TC VI ITLGNK+Q+RA IEAGIVP LI+LL+D+N R ASV S EVGE EE W+PLL LL+N +TQ + V IL +L+VV DS+ W+ R LLSS NT VRDR C+VI IT G+KEQTRA +EAGIVPVLI+LL ++GE EE R IPLLLSL E+ + + +V V EI+E++L+
Sbjct: 445 VLTNSCAALGCLCTPRLGTSLYPRVNREMVQAVAGAEVCQRLVELLDHTSPAVQMQALFAINGIVSSEDQHTR------------------------------------------------IVASVIRI------------------ATEVGGLEDVRKWVPLLLNLLENDGAQVI---------FEVDPDSDAWRRLRHLLSSSNTEVRENTCQVIRRITLGNKEQTRAMIEAGIVPALIQLLSDLNPDTRRYVASV-SNATEVGEPEEVGRWVPLLLDLLQNDDTQLLVKVLTILEIILQVVRDSDAWQPLRRLLSSPNTKVRDRTCQVIHRITLGSKEQTRAMVEAGIVPVLIQLLADVNYDIRSHAASAISNATKLGESEEVRRRIPLLLSLLEHIYFYEVMVDVLEIIEEILE 786
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: A0A5B6Z4Y8_DAVIN (Importin subunit alpha n=5 Tax=asterids TaxID=71274 RepID=A0A5B6Z4Y8_DAVIN) HSP 1 Score: 87.0 bits (214), Expect = 2.450e-14 Identity = 73/244 (29.92%), Postives = 111/244 (45.49%), Query Frame = 3
Query: 294 VLTNSCAALGYLLAPRLETSLNPRVNREIVQVAAGAEVCQRLGELLHHTSPTVQMQALCAIHGIVSSEDQHTRELVISNGTPGLRHLLVSSHL-GLREKTCQVICGITTGNKAQIQAVTEASIIPTLIQLLADVNHHIRRYAALAISNVTELGDPEEVK-----GWI-PLLFILLENDTQGILKVSEILEKFLKV-------------------VPDSDAWRRLQHLLSSSGTKVREKTCDVIE 947
VLT++C AL YL S P + +Q A VC RL ELL H SPTV + AL + IV+ +D T+ ++ + P L LL +H ++++ C I IT GN+ QIQAV EASII L+ LL + G E+++ G I PL +L+ D + + E LE LKV + + D ++++L + ++ EK ++E
Sbjct: 261 VLTDACWALSYL-------SDGPN---DKIQAVIEAGVCPRLVELLLHPSPTVLIPALRTVGNIVTGDDAQTQFMIDNQVLPCLFQLLTQNHKKSIKKEACWTISNITAGNRGQIQAVIEASIILPLVHLLQNAEFXXXXXXXXXXXXXXXXGSNEQIRFLASQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGMNGGINIYAQMIDECDGLDKIENLQTHDNNEIYEKAVKILE 494
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: A0A0L9U929_PHAAN (IBB domain-containing protein n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9U929_PHAAN) HSP 1 Score: 71.2 bits (173), Expect = 1.610e-9 Identity = 53/173 (30.64%), Postives = 82/173 (47.40%), Query Frame = 3
Query: 294 VLTNSCAALGYLLAPRLETSLNPRVNREIVQVAAGAEVCQRLGELLHHTSPTVQMQALCAIHGIVSSEDQHTRELVISNGT--------------PGLRHLLVSSHLGLREKTCQ-VICGITTGNKAQIQAVTEASIIPTLIQLLADVNHHIRRYAALAISNVTELGDPEEVK 767
VLT++C L YL ++ +Q VC +L +LL + S V + AL A+ I HT+ L SN P LR LL + L K +I IT+G AQ+QAV +A IIP+L++++ + +++ AA AI NVT +G + ++
Sbjct: 141 VLTDTCWTLAYLSESHMDN----------IQAIIELGVCPKLVQLLQYPSDGVILPALLALGNIAVGGGAHTQILPSSNSIATKKTQLLIDNQLLPCLRQLLEREYTRLIFKEASWIIAFITSGTPAQVQAVIDADIIPSLVKVVHNAEFEVKKEAACAIFNVTCIGSDDNIR 303
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: A0A0L9U9M1_PHAAN (Importin subunit alpha n=1 Tax=Phaseolus angularis TaxID=3914 RepID=A0A0L9U9M1_PHAAN) HSP 1 Score: 62.8 bits (151), Expect = 1.120e-6 Identity = 84/383 (21.93%), Postives = 157/383 (40.99%), Query Frame = 3
Query: 660 IPTLIQLLADVNHHIRRYAALAISNVTELGDP-----EEVK-GWIPLLFILLENDTQGILKVSEILEKFLKVVPDSDAWRRLQHLLSSSGTKVREKTCDVIEYITLGNKKQSRAAIEAGIVPVLIKLLADVNYGIRLGAASVISKVIEVGEAEEARGWI-------PLLFILLENGETQDVPLVSKILTKLLKVVPDSNTWR------RFRHLLSSSNTAVRDRACRVIDCITWGNKEQTRAAIEAGIVPVLIKLLVIEVGEPEEARGWIPLLLSL*ENFDIQSIVGVSEILEKVLKVVPDSNTWRRFRHLLSSSNT-AVRDRACRVIDRITRGNKEQTRAAIEAGIVPVLIKLLADRDYDIRPHAASALSKVIEVGEPEEAR 1748
+P +++ + D H + A + + LG+P E VK G +P LL D L+V E+L W VI + + A +E G+VP+L+ L + + IR A ++ + VG++ + R + PLL L + V V+ L+ LL+ +P + + + L+ +++ V C + I+ G + +A IE G+ P L++LL P + +P L +++ ++ E + + D+ R LL+ T + A I IT Q +A ++A I+P L+K++ + +++++ AA A+ V +G R
Sbjct: 68 VPEIVKRICDEYPHKQLEATAHLRTILTLGEPAPPVDELVKHGILPRFLELLSRDDAPYLQV-EVL------------W--------------------VISDFVFASSQHKSAVVEVGVVPLLVNLFSSSHDDIREEAIWILGNI--VGDSPDFRDLVLSHGALMPLLCQLQPHSSLHIVRAVTWSLSVLLRGMPPVDFEQVKIALPALQRLIHATDEDVLADTCWTLAYISEGRMDIVQAIIELGVCPKLVQLLQY----PSDGV-ILPAL---------EALGNIAAGGEAHTQFLIDNQLLPCLRQLLAREYTKTIFKEASWTIAVITSVTSAQVQAVVDANIIPALVKVVHNAEFEVKKEAACAIFNVTCIGSDNNIR 401
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: UPI001F5F62A8 (importin subunit alpha-1a-like n=1 Tax=Vigna umbellata TaxID=87088 RepID=UPI001F5F62A8) HSP 1 Score: 61.2 bits (147), Expect = 2.510e-6 Identity = 63/284 (22.18%), Postives = 124/284 (43.66%), Query Frame = 3
Query: 939 VIEYITLGNKKQSRAAIEAGIVPVLIKLLADVNYGIRLGAASVISKVIEVGEAEEARGWI-------PLLFILLENGETQDVPLVSKILTKLLKVVPDSNTWR------RFRHLLSSSNTAVRDRACRVIDCITWGNKEQTRAAIEAGIVPVLIKLLVIEVGEPEEARGWIPLLLSL*ENFDIQSIVGVSEILEKVLKVVPDSNTWRRFRHLLSSSNT-AVRDRACRVIDRITRGNKEQTRAAIEAGIVPVLIKLLADRDYDIRPHAASALSKVIEVGEPEEAR 1748
VI + + A +E G+VP+L+ L + + IR A ++ + VG++ + R + PLL L + V V+ L+ LL+ +P + + + L+ +++ V C + I+ G + +A IE G+ P L++LL + +P L +++ ++ E + + D+ R LL T + A I IT Q +A ++A I+P L+K++ + +++++ AA A+ V +G + R
Sbjct: 13 VISDFVFASSQHKSAVVEVGVVPLLVNLFSSSHDDIREEAIWILGNI--VGDSPDFRDLVLSHGALMPLLCQLQPHSSLHIVRAVTWSLSVLLRGMPPVDFEQVKIALPALQRLIHATDEDVLADTCWTLAYISEGRMDIVQAIIELGVCPKLVQLLQYPLD-----GVILPAL---------EALGNIAAGGEAHTQFLIDNQLLPCLRQLLEREYTKTIFKEASWTIAVITSVTSAQVQAVVDADIIPALVKVVHNAEFEVKKEAACAIFNVTCIGSDDNIR 280
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Match: A0A835FS31_9POAL (Uncharacterized protein n=1 Tax=Digitaria exilis TaxID=1010633 RepID=A0A835FS31_9POAL) HSP 1 Score: 57.4 bits (137), Expect = 4.860e-5 Identity = 41/158 (25.95%), Postives = 70/158 (44.30%), Query Frame = 3
Query: 294 VLTNSCAALGYLLAPRLETSLNPRVNREIVQVAAGAEVCQRLGELLHHTSPTVQMQALCAIHGIVSSEDQHTRELVISNGTPGLRHLLVSSHLGLREKTCQVICGITTGNKAQIQAVTEASIIPTLIQLLADVNHHIRRYAALAISNVTELGDPEEVK 767
VL+++C+A+ ++ + + + +Q +VC RL ELL H+SPTV AL V+ I GN AQIQAV + +II L+ L+ + +++ AA AI+N T++G P++++
Sbjct: 174 VLSDACSAISFMF--------DGCDDSKKIQALIDVKVCPRLVELLTHSSPTVVYPAL------------------------------------------SVVSRIANGNAAQIQAVIDGNIIGPLVHLMQAAAYDVKKEAAFAIANATDVGTPDQIE 281 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12616.2163.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12616.2163.1 >prot_Ecto-sp13_S_contig12616.2163.1 ID=prot_Ecto-sp13_S_contig12616.2163.1|Name=mRNA_Ecto-sp13_S_contig12616.2163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=326bp MQALCAIHGIVSSEDQHTRELVISNGTPGLRHLLVSSHLGLREKTCQVICback to top mRNA from alignment at Ecto-sp13_S_contig12616:709..4993- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12616.2163.1 ID=mRNA_Ecto-sp13_S_contig12616.2163.1|Name=mRNA_Ecto-sp13_S_contig12616.2163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12616:709..4993- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12616:709..4993- >mRNA_Ecto-sp13_S_contig12616.2163.1 ID=mRNA_Ecto-sp13_S_contig12616.2163.1|Name=mRNA_Ecto-sp13_S_contig12616.2163.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=978bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12616:709..4993- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |