prot_Ecto-sp13_S_contig9956.21604.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9956.21604.1
Unique Nameprot_Ecto-sp13_S_contig9956.21604.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length357
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9956.21604.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI)

HSP 1 Score: 490 bits (1261), Expect = 3.020e-154
Identity = 313/343 (91.25%), Postives = 316/343 (92.13%), Query Frame = 0 
Query:    1 LKSKAARIGAGFVDTCLHYLQVSVSRIRSLRGRAADAAXXXXXXXXXXXXXXXXVAVADSGRLREGASGSRIGSRHFRRRSSSLPPEKGSTRQGRMMGGASSRSTSVEGRDVTRAKQLEAEHHGSVVVGSGRGXXXXXXXXX---SPQAQIASLHRRAGRCILLLAKFVTRIKEEENGAASGTTTVRVSVEVGPDRVPVLDVCLPLSTVLGDLRCEVARRFRVPVEFLELARVIRRKGNTTTEVLDQDGASLEALGLAVAGTGSNLPNHLPTASPSKTSAPVADVAATTXXXXXXXXXXXXXXXXSNXASAGATNAPPPGVELLARMIGEPSFRGDQASGGSN 340
            LKSKAARIGAGFVDTCLHYLQVSVSRIRSLRGRA DAA  XXXXXXXXXXX   VAVADSGRLREGASGSRIGSRHFRRRSSSLPPEKGSTRQGRMMGGASSRSTSVEGRDVTRA QLEAEHHGSVVVGSGRGXXXXXXXXX   SPQAQIASLHRRAGRCILLLAKFVT+ KEEENGAASGTT VRVSVEVGPDRVPVLDV LPLSTVLGDLRCEVARRFRVP EFLEL RV+RRKGN TTEVLDQDGASLEALGL VAGTGSNLPNHLPT SPSKTSAP A      XXXXXXXXXXXXXXXXSN ASAGATNAPPPGVELLAR+IGEPSFRGD ASGGSN
Sbjct: 1051 LKSKAARIGAGFVDTCLHYLQVSVSRIRSLRGRAGDAAAPXXXXXXXXXXXDTAVAVADSGRLREGASGSRIGSRHFRRRSSSLPPEKGSTRQGRMMGGASSRSTSVEGRDVTRAMQLEAEHHGSVVVGSGRGXXXXXXXXXXXXSPQAQIASLHRRAGRCILLLAKFVTKSKEEENGAASGTTRVRVSVEVGPDRVPVLDVRLPLSTVLGDLRCEVARRFRVPAEFLELGRVVRRKGNATTEVLDQDGASLEALGLVVAGTGSNLPNHLPTPSPSKTSAP-AXXXXXXXXXXXXXXXXXXXXXXSNNASAGATNAPPPGVELLARVIGEPSFRGDLASGGSN 1392
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BLAST of mRNA_Ecto-sp13_S_contig9956.21604.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE)

HSP 1 Score: 426 bits (1096), Expect = 4.170e-132
Identity = 283/356 (79.49%), Postives = 291/356 (81.74%), Query Frame = 0 
Query:    1 LKSKAARIGAGFVDTCLHYLQVSVSRIRSLRGRAADAAXXXXXXXXXXXXXXXXVAVADSGRLREGASGSRIGSRHFRRRSSSLPPEKGSTRQGRMMGGASSRSTSVEGRDVTRAKQLEAEHHGSVVVGSGRGXXXXXXXXX---SPQAQIASLHRRAGRCILLLAKFVTRIKEEENGAASGTTTVRVSVEVGPDRVPVLDVCLPLSTVLGDLRCEVARRFRVPVEFLELARVIRRKGNTTTEVLDQDGASLEALGLAVAGTGSNLPNHLPTASPSKTSAPVADVAATTXXXXXXXXXXXXXXXXSNXASAGATNAPPPGVELLARMIGEPSFRGDQASGGSNGNSSKAPRKDDRV 353
            LKSKAARIGAGFVDTCLHYLQVSVSR+RSLRGR+ADA XXXXXXXXX       V VADSGR                                 MMGGASSRSTSVEGRDVTRAKQLEAEH G VVVGSGRGXXXXXXXXX   SPQAQI SL+RRAGRCILLLAKFVTR KEEENG ASGTTTVRVSVEVGPDRVPVLDV LPL+TVLGDLRCEVARRFRV  EFLELARV+RRKGNTTTEVLDQDGASLEALGL VAGTGSNLPNHLPT SPSKTSAPVA VAAT XXXXXXXXXXXXXXXX  X     TNAPPPGVELLAR+ GEPSFRGDQASGG+NGNSSKAP+KDDRV
Sbjct:   94 LKSKAARIGAGFVDTCLHYLQVSVSRMRSLRGRSADAXXXXXXXXXXSSEEDTAVGVADSGR---------------------------------MMGGASSRSTSVEGRDVTRAKQLEAEHQGGVVVGSGRGXXXXXXXXXXXXSPQAQIRSLYRRAGRCILLLAKFVTRSKEEENGDASGTTTVRVSVEVGPDRVPVLDVRLPLNTVLGDLRCEVARRFRVQAEFLELARVVRRKGNTTTEVLDQDGASLEALGLVVAGTGSNLPNHLPTTSPSKTSAPVAHVAATXXXXXXXXXXXXXXXXXXXXXXXXXTNAPPPGVELLARIFGEPSFRGDQASGGTNGNSSKAPKKDDRV 416
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9956.21604.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LU88_ECTSI3.020e-15491.25Ubiquitin domain-containing protein (Partial) (Fra... [more]
A0A6H5KTV6_9PHAE4.170e-13279.49USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9956contigEcto-sp13_S_contig9956:1001..3526 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9956.21604.1mRNA_Ecto-sp13_S_contig9956.21604.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9956 1001..3526 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9956.21604.1 ID=prot_Ecto-sp13_S_contig9956.21604.1|Name=mRNA_Ecto-sp13_S_contig9956.21604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=357bp
LKSKAARIGAGFVDTCLHYLQVSVSRIRSLRGRAADAAAPAPLPAASSSE
EDTAVAVADSGRLREGASGSRIGSRHFRRRSSSLPPEKGSTRQGRMMGGA
SSRSTSVEGRDVTRAKQLEAEHHGSVVVGSGRGSAAAAAAAASPQAQIAS
LHRRAGRCILLLAKFVTRIKEEENGAASGTTTVRVSVEVGPDRVPVLDVC
LPLSTVLGDLRCEVARRFRVPVEFLELARVIRRKGNTTTEVLDQDGASLE
ALGLAVAGTGSNLPNHLPTASPSKTSAPVADVAATTTTVNSSFSSSSSPS
PGSNNASAGATNAPPPGVELLARMIGEPSFRGDQASGGSNGNSSKAPRKD
DRVSSST
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