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Homology
BLAST of mRNA_Ecto-sp13_S_contig9956.21604.1 vs. uniprot
Match: D8LU88_ECTSI (Ubiquitin domain-containing protein (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU88_ECTSI) HSP 1 Score: 490 bits (1261), Expect = 3.020e-154 Identity = 313/343 (91.25%), Postives = 316/343 (92.13%), Query Frame = 1 Query: 1 LKSKAARIGAGFVDTCLHYLQVSVSRIRSLRGRAADAAXXXXXXXXXXXXXXXXVAVADSGRLREGASGSRIGSRHFRRRSSSLPPEKGSTRQGRMMGGASSRSTSVEGRDVTRAKQLEAEHHGSVVVGSGRGXXXXXXXXX---SPQAQIASLHRRAGRCILLLAKFVTRIKEEENGAASGTTTVRVSVEVGPDRVPVLDVCLPLSTVLGDLRCEVARRFRVPVEFLELARVIRRKGNTTTEVLDQDGASLEALGLAVAGTGSNLPNHLPTASPSKTSAPVADVAATTXXXXXXXXXXXXXXXXSNXASAGATNAPPPGVELLARMIGEPSFRGDQASGGSN 1020
LKSKAARIGAGFVDTCLHYLQVSVSRIRSLRGRA DAA XXXXXXXXXXX VAVADSGRLREGASGSRIGSRHFRRRSSSLPPEKGSTRQGRMMGGASSRSTSVEGRDVTRA QLEAEHHGSVVVGSGRGXXXXXXXXX SPQAQIASLHRRAGRCILLLAKFVT+ KEEENGAASGTT VRVSVEVGPDRVPVLDV LPLSTVLGDLRCEVARRFRVP EFLEL RV+RRKGN TTEVLDQDGASLEALGL VAGTGSNLPNHLPT SPSKTSAP A XXXXXXXXXXXXXXXXSN ASAGATNAPPPGVELLAR+IGEPSFRGD ASGGSN
Sbjct: 1051 LKSKAARIGAGFVDTCLHYLQVSVSRIRSLRGRAGDAAAPXXXXXXXXXXXDTAVAVADSGRLREGASGSRIGSRHFRRRSSSLPPEKGSTRQGRMMGGASSRSTSVEGRDVTRAMQLEAEHHGSVVVGSGRGXXXXXXXXXXXXSPQAQIASLHRRAGRCILLLAKFVTKSKEEENGAASGTTRVRVSVEVGPDRVPVLDVRLPLSTVLGDLRCEVARRFRVPAEFLELGRVVRRKGNATTEVLDQDGASLEALGLVVAGTGSNLPNHLPTPSPSKTSAP-AXXXXXXXXXXXXXXXXXXXXXXSNNASAGATNAPPPGVELLARVIGEPSFRGDLASGGSN 1392
BLAST of mRNA_Ecto-sp13_S_contig9956.21604.1 vs. uniprot
Match: A0A6H5KTV6_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTV6_9PHAE) HSP 1 Score: 426 bits (1096), Expect = 4.170e-132 Identity = 283/356 (79.49%), Postives = 291/356 (81.74%), Query Frame = 1 Query: 1 LKSKAARIGAGFVDTCLHYLQVSVSRIRSLRGRAADAAXXXXXXXXXXXXXXXXVAVADSGRLREGASGSRIGSRHFRRRSSSLPPEKGSTRQGRMMGGASSRSTSVEGRDVTRAKQLEAEHHGSVVVGSGRGXXXXXXXXX---SPQAQIASLHRRAGRCILLLAKFVTRIKEEENGAASGTTTVRVSVEVGPDRVPVLDVCLPLSTVLGDLRCEVARRFRVPVEFLELARVIRRKGNTTTEVLDQDGASLEALGLAVAGTGSNLPNHLPTASPSKTSAPVADVAATTXXXXXXXXXXXXXXXXSNXASAGATNAPPPGVELLARMIGEPSFRGDQASGGSNGNSSKAPRKDDRV 1059
LKSKAARIGAGFVDTCLHYLQVSVSR+RSLRGR+ADA XXXXXXXXX V VADSGR MMGGASSRSTSVEGRDVTRAKQLEAEH G VVVGSGRGXXXXXXXXX SPQAQI SL+RRAGRCILLLAKFVTR KEEENG ASGTTTVRVSVEVGPDRVPVLDV LPL+TVLGDLRCEVARRFRV EFLELARV+RRKGNTTTEVLDQDGASLEALGL VAGTGSNLPNHLPT SPSKTSAPVA VAAT XXXXXXXXXXXXXXXX X TNAPPPGVELLAR+ GEPSFRGDQASGG+NGNSSKAP+KDDRV
Sbjct: 94 LKSKAARIGAGFVDTCLHYLQVSVSRMRSLRGRSADAXXXXXXXXXXSSEEDTAVGVADSGR---------------------------------MMGGASSRSTSVEGRDVTRAKQLEAEHQGGVVVGSGRGXXXXXXXXXXXXSPQAQIRSLYRRAGRCILLLAKFVTRSKEEENGDASGTTTVRVSVEVGPDRVPVLDVRLPLNTVLGDLRCEVARRFRVQAEFLELARVVRRKGNTTTEVLDQDGASLEALGLVVAGTGSNLPNHLPTTSPSKTSAPVAHVAATXXXXXXXXXXXXXXXXXXXXXXXXXTNAPPPGVELLARIFGEPSFRGDQASGGTNGNSSKAPKKDDRV 416
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9956.21604.1 vs. uniprot
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match Name | E-value | Identity | Description | |
D8LU88_ECTSI | 3.020e-154 | 91.25 | Ubiquitin domain-containing protein (Partial) (Fra... | [more] |
A0A6H5KTV6_9PHAE | 4.170e-132 | 79.49 | USP domain-containing protein n=1 Tax=Ectocarpus s... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Stop | 0 |
Start | 0 |
Seed ortholog score | 494.2 |
Seed ortholog evalue | 5.1e-137 |
Seed eggNOG ortholog | 2880.D8LU88 |
Model size | 1071 |
KEGG ko | ko:K11840,ko:K11869 |
Hectar predicted targeting category | mitochondrion |
Exons | 4 |
EggNOG free text desc. | ubiquitinyl hydrolase activity |
EggNOG OGs | COG5077@1,KOG1866@2759 |
Ec32 ortholog description | Peptidase C19, ubiquitin carboxyl-terminal hydrolase |
Ec32 ortholog | Ec-14_004080.1 |
EC | 3.4.19.12 |
Cds size | 1071 |
COG Functional cat. | O |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko01000,ko01002,ko04121 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1681464255.5350654-CDS-Ecto-sp13_S_contig9956:1000..1233 | 1681464255.5350654-CDS-Ecto-sp13_S_contig9956:1000..1233 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9956 1001..1233 + |
1681464255.5485935-CDS-Ecto-sp13_S_contig9956:1817..2119 | 1681464255.5485935-CDS-Ecto-sp13_S_contig9956:1817..2119 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9956 1818..2119 + |
1681464255.5600977-CDS-Ecto-sp13_S_contig9956:2494..2649 | 1681464255.5600977-CDS-Ecto-sp13_S_contig9956:2494..2649 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9956 2495..2649 + |
1681464255.5715165-CDS-Ecto-sp13_S_contig9956:3145..3526 | 1681464255.5715165-CDS-Ecto-sp13_S_contig9956:3145..3526 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9956 3146..3526 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9956.21604.1 >prot_Ecto-sp13_S_contig9956.21604.1 ID=prot_Ecto-sp13_S_contig9956.21604.1|Name=mRNA_Ecto-sp13_S_contig9956.21604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=357bp
LKSKAARIGAGFVDTCLHYLQVSVSRIRSLRGRAADAAAPAPLPAASSSE EDTAVAVADSGRLREGASGSRIGSRHFRRRSSSLPPEKGSTRQGRMMGGA SSRSTSVEGRDVTRAKQLEAEHHGSVVVGSGRGSAAAAAAAASPQAQIAS LHRRAGRCILLLAKFVTRIKEEENGAASGTTTVRVSVEVGPDRVPVLDVC LPLSTVLGDLRCEVARRFRVPVEFLELARVIRRKGNTTTEVLDQDGASLE ALGLAVAGTGSNLPNHLPTASPSKTSAPVADVAATTTTVNSSFSSSSSPS PGSNNASAGATNAPPPGVELLARMIGEPSFRGDQASGGSNGNSSKAPRKD DRVSSST back to topmRNA from alignment at Ecto-sp13_S_contig9956:1001..3526+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig9956.21604.1 ID=mRNA_Ecto-sp13_S_contig9956.21604.1|Name=mRNA_Ecto-sp13_S_contig9956.21604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2526bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9956:1001..3526+ (Ectocarpus species13 EcNAP12_S_4_19m) CTCAAGTCCAAGGCCGCCAGGATCGGCGCGGGGTTCGTGGACACGTGCCT
CCACTACCTACAGGTGTCCGTGTCCCGGATACGGTCGCTCCGCGGCCGCG
CCGCGGACGCTGCTGCTCCTGCGCCGCTGCCGGCGGCATCGTCATCGGAA
GAAGATACTGCTGTTGCCGTTGCCGACAGCGGAAGGTTGAGGGAAGGGGC
GAGCGGGTCGCGGATCGGGTCGCGGCATTTCCGGTGAGTTTTTTTTTTGT
CACCCTGGCAGTGGTGGACTGGTGATGCTTGAAGTATCCGGCGTTTGCTT
TTTGTGGTGAGGTTATTGTTTGGGGCCTGGGAGAGACCTCTCTTCTCCCT
CGGACTTGTCGGGAACACCCGGCGACAGAGAGATTCCACAACAAGATAGG
GTGCTTCTATGTTCGTGGTGGGTGGCGGGCGTCACGGCGTTCTGTGTGTG
TTTTTTTTTTCGTCTACAAAGGCGAATGTCCACCTGATGGGAAGCTCAGG
CGATAAGACGCTTCAGTAGTAATAGCTGGCTGTGGTTCCTCGGTTCCCCG
AATTGCTTCGCACGGAGAGTGTTAACGGTTCGCCGCTGGATGAATCAATG
CCTTCCACAACCTGCCAAGGTAGGGGCGCACGGAGATGTGCGCGCGTGAC
GTTCCTCACCGTGTATCGCGTCGAGACAGTAAGGCATGCCTGCCAATTTT
TTCGGCAAGAAGGCTTGCTCCAAGCTGCTCGACGTCAAATCTCATGTAAG
GAACCCCCTCCCTCCCTCCCCCCCGCGCGCGACCCGCCCAACCCCCCCCA
CACGCCGACCTCGTCAGGAGGCGATCTTCCAGCCTCCCCCCGGAGAAGGG
CAGCACCCGTCAGGGTAGAATGATGGGCGGCGCGTCGTCGAGGTCGACGA
GCGTGGAGGGGAGGGACGTGACGAGGGCGAAGCAGCTCGAAGCGGAACAT
CACGGTAGTGTGGTGGTGGGGTCCGGCCGGGGGAGCGCGGCGGCGGCGGC
GGCGGCGGCATCGCCGCAAGCCCAGATCGCGTCCCTGCATCGAAGAGCCG
GGCGATGCATATTGCTGCTGGCGAAGTTCGTGACCAGGATCAAGGAGGAG
GAGAACGGGGCCGCCTCAGGTGTGTGGCTTGACACGAACGGCGGAGCGGG
GAGGCGAACGAGGGTAGCATTAACCTACCACCTTGGTTTAACGCACTGTG
CTGCTATCTTTGTGGGAGAGAGAGGGAGTATGCGGCACAATCGGTACGTG
GTGGTGTGGTTGTGGTCGCGCAACCACCAGCCACTCGACATCTCCACATC
GGCTACTGTGGTTTTAGAGGATGCACACCTCGTTGTCTGCCGCAGTGATA
ACTTTATTCCCCCTCTTTGTCCCGCCCGCGACATGTATTCGCACCCGATT
GTTTTCCATTACCGAGACCTGCCGCGGTCGCGAATGTTTACACTCTTTGT
CAACTGTCTGACTGCTTGCATCGTTCGGCGTCGGCGTCGCGTAGGCACCA
CCACGGTGCGGGTGAGCGTTGAGGTCGGACCCGATCGCGTGCCGGTGCTA
GACGTGTGCCTGCCGTTGAGCACGGTCCTGGGAGACCTGCGGTGTGAGGT
GGCTCGGCGCTTTCGAGTGCCGGTGGAGTTCCTGGAGCTGGCCAGAGTGG
TGAGCCGGCTTGTGGTTTATTCCCTTGGCACTCCGATCGGTCTCTTCTTG
CCAGGCGTGTTATCATCTCGATCCGCGGTTGTGTTTGGTTGCAGTAAAGG
GGGCTGAAATTCTTGGGGGGGGGGGGTAGATTCCATGGGGAATGTTGTAG
TACGGGGAGATGGAGCGCGGCGCGCGGTGATGTTCGAGATGACCGTCTCG
CCTCCTACACCGCGGTGCATATCTCCCAACCCGTTTTCCCTCTGTCCCGC
CTTCACCAAGGTTGGTAGGGCGCACGAACAGAAGGGTGGACAACCGGTTT
CGGCAGCAGTCAGTTGTCGCCCTACTCTTCGGTCCGTAGCTCGCTGCTCT
TGCCCGCTGCTTCTCCTCTGCCGGCGCTTGACACTGCACTGCTGCTGCTG
CCCTTGGCCGTCGCCGCCTCCGCCTGCCGTCGCCGCCTCCCGCTCGTTCT
CTCTCTCTCGCGCGCGCGGGCGCGTAAAACCACGCGGATGCACAGATTCG
CCGTAAGGGCAACACGACCACAGAGGTACTGGACCAGGACGGGGCCTCGC
TAGAGGCTCTCGGCCTCGCCGTCGCCGGTACCGGGAGCAATCTCCCGAAC
CATCTCCCGACCGCAAGCCCGTCGAAGACGTCGGCTCCGGTGGCAGATGT
CGCCGCCACCACCACCACCGTTAACTCGTCCTTCTCCTCGTCCTCGTCCC
CTTCCCCGGGTTCCAACAACGCCTCCGCGGGTGCTACGAACGCCCCGCCC
CCGGGCGTCGAGCTGCTGGCGAGAATGATCGGCGAGCCCTCTTTCCGTGG
CGATCAAGCGAGCGGCGGCAGCAACGGCAATAGCAGCAAGGCGCCGAGGA
AAGACGACCGCGTCTCAAGTTCTACC back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig9956:1001..3526+ >mRNA_Ecto-sp13_S_contig9956.21604.1 ID=mRNA_Ecto-sp13_S_contig9956.21604.1|Name=mRNA_Ecto-sp13_S_contig9956.21604.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1071bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9956:1001..3526+ (Ectocarpus species13 EcNAP12_S_4_19m) CTCAAGTCCAAGGCCGCCAGGATCGGCGCGGGGTTCGTGGACACGTGCCT CCACTACCTACAGGTGTCCGTGTCCCGGATACGGTCGCTCCGCGGCCGCG CCGCGGACGCTGCTGCTCCTGCGCCGCTGCCGGCGGCATCGTCATCGGAA GAAGATACTGCTGTTGCCGTTGCCGACAGCGGAAGGTTGAGGGAAGGGGC GAGCGGGTCGCGGATCGGGTCGCGGCATTTCCGGAGGCGATCTTCCAGCC TCCCCCCGGAGAAGGGCAGCACCCGTCAGGGTAGAATGATGGGCGGCGCG TCGTCGAGGTCGACGAGCGTGGAGGGGAGGGACGTGACGAGGGCGAAGCA GCTCGAAGCGGAACATCACGGTAGTGTGGTGGTGGGGTCCGGCCGGGGGA GCGCGGCGGCGGCGGCGGCGGCGGCATCGCCGCAAGCCCAGATCGCGTCC CTGCATCGAAGAGCCGGGCGATGCATATTGCTGCTGGCGAAGTTCGTGAC CAGGATCAAGGAGGAGGAGAACGGGGCCGCCTCAGGCACCACCACGGTGC GGGTGAGCGTTGAGGTCGGACCCGATCGCGTGCCGGTGCTAGACGTGTGC CTGCCGTTGAGCACGGTCCTGGGAGACCTGCGGTGTGAGGTGGCTCGGCG CTTTCGAGTGCCGGTGGAGTTCCTGGAGCTGGCCAGAGTGATTCGCCGTA AGGGCAACACGACCACAGAGGTACTGGACCAGGACGGGGCCTCGCTAGAG GCTCTCGGCCTCGCCGTCGCCGGTACCGGGAGCAATCTCCCGAACCATCT CCCGACCGCAAGCCCGTCGAAGACGTCGGCTCCGGTGGCAGATGTCGCCG CCACCACCACCACCGTTAACTCGTCCTTCTCCTCGTCCTCGTCCCCTTCC CCGGGTTCCAACAACGCCTCCGCGGGTGCTACGAACGCCCCGCCCCCGGG CGTCGAGCTGCTGGCGAGAATGATCGGCGAGCCCTCTTTCCGTGGCGATC AAGCGAGCGGCGGCAGCAACGGCAATAGCAGCAAGGCGCCGAGGAAAGAC GACCGCGTCTCAAGTTCTACC back to top
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