mRNA_Ecto-sp13_S_contig12612.2160.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12612.2160.1
Unique NamemRNA_Ecto-sp13_S_contig12612.2160.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI)

HSP 1 Score: 194 bits (493), Expect = 1.680e-55
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 1
Query:    1 GLNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLA 294
            GLNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKD KGGSSGARDQQYCLMAMDVLGRVAGGLA
Sbjct:  811 GLNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDLKGGSSGARDQQYCLMAMDVLGRVAGGLA 908          
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.190e-21
Identity = 57/98 (58.16%), Postives = 58/98 (59.18%), Query Frame = 1
Query:    1 GLNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLA 294
            GLNPARNAATYFVSRFLSRC                                        GALVKDLKDQKGG+SGARDQQYCLMAMDVLGRVAGGLA
Sbjct:  894 GLNPARNAATYFVSRFLSRC----------------------------------------GALVKDLKDQKGGTSGARDQQYCLMAMDVLGRVAGGLA 951          
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: A0A835Z2V2_9STRA (Sister chromatid cohesion protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2V2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 3.940e-13
Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 1
Query:    1 GLNPARNAATYFVSRFLSRCAGKEESAN-FQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLA 294
            GL  A   + +F +RF++RC  KE+    F+ LL N VDDL++ +   EWPAAELLLHA C AL+ DL            Q    MA+D+L +VA  +A
Sbjct:  417 GLAGASAMSRFFAARFIARCQKKEDDGQEFRRLLVNLVDDLVSALPFAEWPAAELLLHAFCKALITDLPKMA--------QHAVFMALDILTKVATAVA 507          
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: A0A7S4RR27_9STRA (Sister chromatid cohesion protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RR27_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.550e-12
Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 1
Query:    1 GLNPARNAATYFVSRFLSRCAGKEE---SANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDL------KDQKGGSSGARDQQYCLMAMDVLGRV 279
            GL   ++   +F S+ + RC+ K E   ++ F+P+L+N VDDLLA  LLPE+PAAE+LL +LC  L  DL         K  +S + +  Y   AMD +G++
Sbjct:  351 GLKGCQSVCDFFTSQMIQRCSRKGEEGGASEFRPVLSNLVDDLLAVQLLPEYPAAEMLLLSLCRRLSHDLLRSSSASVNKNTTSTSAETTYLSTAMDTMGKI 452          
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: A0A0D2X1A1_CAPO3 (Sister chromatid cohesion protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X1A1_CAPO3)

HSP 1 Score: 70.1 bits (170), Expect = 6.510e-12
Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 1
Query:   22 AATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSG--ARDQQYCLMAMDVLGRVA 282
            AA  FV+ FL RC  K++  +++P+L +   DLL  + LPEWPAAE++LH LC AL+  +      +    A D    L+A++++G VA
Sbjct:  589 AAQEFVTTFLKRCTNKKDENDYKPVLESFAKDLLTVLHLPEWPAAEVVLHTLCAALIPIVNGAISSTDATKASDSALRLLAIEIVGMVA 677          
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: A0A485K4A2_9STRA (Sister chromatid cohesion protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K4A2_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 5.740e-11
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    4 LNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRV 279
            L+  R+ +   V  F+ RC  KEE  +++ +  N VDDLLA +L PEWPA EL+L A+   L   +  QK   +   + Q  L+A+++LG++
Sbjct:  466 LDSVRDTSRSIVHSFMQRCMKKEEENDYRQVFENFVDDLLAMLLSPEWPAVELILEAMTAGLTNLMSQQK---TSKLESQSSLLALNLLGKI 554          
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: A0A6G0X3I6_9STRA (Sister chromatid cohesion protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3I6_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.990e-10
Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 1
Query:    4 LNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRV 279
            L+  R  A   V  F+ +C  KEE  +F+    N VDDLLA +L PEWPA E++L A+ G L   +  QK   S   + Q  L+A+ +LG++
Sbjct:  451 LDGVRETAKSIVHCFVQKCMKKEEDHDFRQKFENFVDDLLAMMLFPEWPAVEVILMAVSGGLTNLMVQQK---SSKLESQSSLLALHLLGKI 539          
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: A0A7F5R8R5_AGRPL (nipped-B-like protein A n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5R8R5_AGRPL)

HSP 1 Score: 65.5 bits (158), Expect = 2.710e-10
Identity = 38/90 (42.22%), Postives = 50/90 (55.56%), Query Frame = 1
Query:   13 ARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVA 282
            A   A  F++ FLS+C  K E  +++PL  N V DLLATV  PEWPA ELLL  L   LVK+  ++        D    + ++D LG VA
Sbjct:  769 ATTTAGTFLAVFLSKCGSKSEDIDYRPLFENFVQDLLATVNKPEWPATELLLSLLGKMLVKNFSNK------GTDMSLRVASLDYLGVVA 852          
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: A0A7F5R8P1_AGRPL (Nipped-B protein n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5R8P1_AGRPL)

HSP 1 Score: 65.5 bits (158), Expect = 2.740e-10
Identity = 38/90 (42.22%), Postives = 50/90 (55.56%), Query Frame = 1
Query:   13 ARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVA 282
            A   A  F++ FLS+C  K E  +++PL  N V DLLATV  PEWPA ELLL  L   LVK+  ++        D    + ++D LG VA
Sbjct:  769 ATTTAGTFLAVFLSKCGSKSEDIDYRPLFENFVQDLLATVNKPEWPATELLLSLLGKMLVKNFSNK------GTDMSLRVASLDYLGVVA 852          
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: UPI0006261516 (nipped-B-like protein n=1 Tax=Orussus abietinus TaxID=222816 RepID=UPI0006261516)

HSP 1 Score: 63.9 bits (154), Expect = 9.560e-10
Identity = 38/90 (42.22%), Postives = 49/90 (54.44%), Query Frame = 1
Query:   13 ARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVA 282
            A   A  F++ FLS+C  K E  +++PL  N V DLLATV  PEWPAAELLL  L   LV    ++        D    + ++D LG VA
Sbjct:  924 ATRTAGNFLTVFLSKCGSKGEEIDYRPLFENFVQDLLATVNKPEWPAAELLLSLLGNLLVGHFSNKSS------DMSLRVASLDYLGVVA 1007          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSV8_ECTSI1.680e-5598.98Sister chromatid cohesion protein n=1 Tax=Ectocarp... [more]
A0A6H5JLU6_9PHAE1.190e-2158.16PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A835Z2V2_9STRA3.940e-1342.42Sister chromatid cohesion protein n=1 Tax=Tribonem... [more]
A0A7S4RR27_9STRA2.550e-1239.22Sister chromatid cohesion protein n=6 Tax=Ditylum ... [more]
A0A0D2X1A1_CAPO36.510e-1239.33Sister chromatid cohesion protein n=2 Tax=Capsaspo... [more]
A0A485K4A2_9STRA5.740e-1136.96Sister chromatid cohesion protein n=1 Tax=Aphanomy... [more]
A0A6G0X3I6_9STRA1.990e-1039.13Sister chromatid cohesion protein n=1 Tax=Aphanomy... [more]
A0A7F5R8R5_AGRPL2.710e-1042.22nipped-B-like protein A n=1 Tax=Agrilus planipenni... [more]
A0A7F5R8P1_AGRPL2.740e-1042.22Nipped-B protein n=1 Tax=Agrilus planipennis TaxID... [more]
UPI00062615169.560e-1042.22nipped-B-like protein n=1 Tax=Orussus abietinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12612contigEcto-sp13_S_contig12612:747..1784 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score194.9
Seed ortholog evalue1.8e-47
Seed eggNOG ortholog2880.D7FSV8
Model size296
KEGG koko:K06672
KEGG Pathwayko04111,map04111
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.cohesin loading
EggNOG OGsKOG1020@1,KOG1020@2759
Cds size294
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462673.1253967-CDS-Ecto-sp13_S_contig12612:748..8661681462673.1253967-CDS-Ecto-sp13_S_contig12612:748..866Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12612 749..866 -
1681462673.13569-CDS-Ecto-sp13_S_contig12612:1166..12861681462673.13569-CDS-Ecto-sp13_S_contig12612:1166..1286Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12612 1167..1286 -
1681462673.1439774-CDS-Ecto-sp13_S_contig12612:1728..17841681462673.1439774-CDS-Ecto-sp13_S_contig12612:1728..1784Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12612 1729..1784 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12612.2160.1prot_Ecto-sp13_S_contig12612.2160.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12612 749..1784 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12612.2160.1

>prot_Ecto-sp13_S_contig12612.2160.1 ID=prot_Ecto-sp13_S_contig12612.2160.1|Name=mRNA_Ecto-sp13_S_contig12612.2160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp
GLNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWP
AAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLA
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mRNA from alignment at Ecto-sp13_S_contig12612:747..1784-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12612.2160.1 ID=mRNA_Ecto-sp13_S_contig12612.2160.1|Name=mRNA_Ecto-sp13_S_contig12612.2160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12612:747..1784- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCTCAACCCTGCGAGGAACGCGGCCACGTACTTCGTCTCGCGGTTCCT TTCCAGGTATTGTTGTTGTTGTTGTTGTTGTTGTTGTTCTCGTGTCACCC CATTGAAGTCACTCGTGCATGGTGTTTCTCCTGAAAAGTGCGTCCTCAGA GCAAGGAAGTGTCGTGAAGTTTAGACCCCCGCGACAACATGCTTCGGGGC AACATGCTCCTGAAGACAAAGGTGTCCTACGCGTACGCGGGGAGTGTTTT TTTCTTTCGTGTGTTTCGCACGACTGTACTCGTACTCCCATCGATGCCTT TTCGTAGTGCTGCTCTTGGCGTGCTTCGTGGGTTGGCTTGCCGCCTGAGG AGCGCACCGCTTGGAGGAAGAGAGTCCTCCTCCTTTTGCCCCTAAACTTA TCGTCCGGCGAAGTTAGCTTTTCATTGGTCTCGTCTCTTGCTTTCGTTCG GATCGCGACCGATCGCTCCGTGTGTCGTGCTACGGGTGTCGTGTCAAGGT GTGCCGGTAAGGAGGAGAGCGCCAACTTCCAGCCGCTCCTGGCCAACACT GTCGACGACCTCCTGGCCACTGTCTTGCTCCCGGAGTGGCCGGCGGCGGA GCTTCTCCTTCATGCTCTGTGAGTGTGTATGTCGTCTTTGTTGTTGTTGC GTGTTGTTTATGGTGTTGGTGTCGTTGGTGTCTTTGTTTTTGTCATTGTT ATCGTCGTCTCATTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTTGCTGTC GCTGTTGCTGTTACTGTTGCTGTTGCTGTTGTTGTTGTTGTTGTTGTTGT TGTTGCTGTTGCTGTCGCTGTTGCTGTTGCTGTTGCTGGTGTTGGTATTG GATGGTGAAGATGTCGTTGATTGTTGTTGATGCTGGTGGTTCTTGCTGAT GTGGTTGTTGTGGTTCAGGTGCGGGGCGTTGGTGAAGGACCTCAAGGACC AGAAAGGCGGCTCTTCAGGCGCGAGGGACCAGCAGTACTGCCTCATGGCC ATGGATGTCCTCGGACGGGTGGCCGGTGGCTTAGCGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12612:747..1784-

>mRNA_Ecto-sp13_S_contig12612.2160.1 ID=mRNA_Ecto-sp13_S_contig12612.2160.1|Name=mRNA_Ecto-sp13_S_contig12612.2160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12612:747..1784- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCTCAACCCTGCGAGGAACGCGGCCACGTACTTCGTCTCGCGGTTCCT
TTCCAGGTGTGCCGGTAAGGAGGAGAGCGCCAACTTCCAGCCGCTCCTGG
CCAACACTGTCGACGACCTCCTGGCCACTGTCTTGCTCCCGGAGTGGCCG
GCGGCGGAGCTTCTCCTTCATGCTCTGTGCGGGGCGTTGGTGAAGGACCT
CAAGGACCAGAAAGGCGGCTCTTCAGGCGCGAGGGACCAGCAGTACTGCC
TCATGGCCATGGATGTCCTCGGACGGGTGGCCGGTGGCTTAGCG
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