mRNA_Ecto-sp13_S_contig12612.2160.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: D7FSV8_ECTSI (Sister chromatid cohesion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSV8_ECTSI) HSP 1 Score: 194 bits (493), Expect = 1.680e-55 Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 1
Query: 1 GLNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLA 294
GLNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKD KGGSSGARDQQYCLMAMDVLGRVAGGLA
Sbjct: 811 GLNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDLKGGSSGARDQQYCLMAMDVLGRVAGGLA 908
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: A0A6H5JLU6_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLU6_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 1.190e-21 Identity = 57/98 (58.16%), Postives = 58/98 (59.18%), Query Frame = 1
Query: 1 GLNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLA 294
GLNPARNAATYFVSRFLSRC GALVKDLKDQKGG+SGARDQQYCLMAMDVLGRVAGGLA
Sbjct: 894 GLNPARNAATYFVSRFLSRC----------------------------------------GALVKDLKDQKGGTSGARDQQYCLMAMDVLGRVAGGLA 951
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: A0A835Z2V2_9STRA (Sister chromatid cohesion protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2V2_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 3.940e-13 Identity = 42/99 (42.42%), Postives = 57/99 (57.58%), Query Frame = 1
Query: 1 GLNPARNAATYFVSRFLSRCAGKEESAN-FQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVAGGLA 294
GL A + +F +RF++RC KE+ F+ LL N VDDL++ + EWPAAELLLHA C AL+ DL Q MA+D+L +VA +A
Sbjct: 417 GLAGASAMSRFFAARFIARCQKKEDDGQEFRRLLVNLVDDLVSALPFAEWPAAELLLHAFCKALITDLPKMA--------QHAVFMALDILTKVATAVA 507
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: A0A7S4RR27_9STRA (Sister chromatid cohesion protein n=6 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RR27_9STRA) HSP 1 Score: 71.2 bits (173), Expect = 2.550e-12 Identity = 40/102 (39.22%), Postives = 60/102 (58.82%), Query Frame = 1
Query: 1 GLNPARNAATYFVSRFLSRCAGKEE---SANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDL------KDQKGGSSGARDQQYCLMAMDVLGRV 279
GL ++ +F S+ + RC+ K E ++ F+P+L+N VDDLLA LLPE+PAAE+LL +LC L DL K +S + + Y AMD +G++
Sbjct: 351 GLKGCQSVCDFFTSQMIQRCSRKGEEGGASEFRPVLSNLVDDLLAVQLLPEYPAAEMLLLSLCRRLSHDLLRSSSASVNKNTTSTSAETTYLSTAMDTMGKI 452
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: A0A0D2X1A1_CAPO3 (Sister chromatid cohesion protein n=2 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X1A1_CAPO3) HSP 1 Score: 70.1 bits (170), Expect = 6.510e-12 Identity = 35/89 (39.33%), Postives = 54/89 (60.67%), Query Frame = 1
Query: 22 AATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSG--ARDQQYCLMAMDVLGRVA 282
AA FV+ FL RC K++ +++P+L + DLL + LPEWPAAE++LH LC AL+ + + A D L+A++++G VA
Sbjct: 589 AAQEFVTTFLKRCTNKKDENDYKPVLESFAKDLLTVLHLPEWPAAEVVLHTLCAALIPIVNGAISSTDATKASDSALRLLAIEIVGMVA 677
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: A0A485K4A2_9STRA (Sister chromatid cohesion protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485K4A2_9STRA) HSP 1 Score: 67.4 bits (163), Expect = 5.740e-11 Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 1
Query: 4 LNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRV 279
L+ R+ + V F+ RC KEE +++ + N VDDLLA +L PEWPA EL+L A+ L + QK + + Q L+A+++LG++
Sbjct: 466 LDSVRDTSRSIVHSFMQRCMKKEEENDYRQVFENFVDDLLAMLLSPEWPAVELILEAMTAGLTNLMSQQK---TSKLESQSSLLALNLLGKI 554
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: A0A6G0X3I6_9STRA (Sister chromatid cohesion protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3I6_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 1.990e-10 Identity = 36/92 (39.13%), Postives = 52/92 (56.52%), Query Frame = 1
Query: 4 LNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRV 279
L+ R A V F+ +C KEE +F+ N VDDLLA +L PEWPA E++L A+ G L + QK S + Q L+A+ +LG++
Sbjct: 451 LDGVRETAKSIVHCFVQKCMKKEEDHDFRQKFENFVDDLLAMMLFPEWPAVEVILMAVSGGLTNLMVQQK---SSKLESQSSLLALHLLGKI 539
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: A0A7F5R8R5_AGRPL (nipped-B-like protein A n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5R8R5_AGRPL) HSP 1 Score: 65.5 bits (158), Expect = 2.710e-10 Identity = 38/90 (42.22%), Postives = 50/90 (55.56%), Query Frame = 1
Query: 13 ARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVA 282
A A F++ FLS+C K E +++PL N V DLLATV PEWPA ELLL L LVK+ ++ D + ++D LG VA
Sbjct: 769 ATTTAGTFLAVFLSKCGSKSEDIDYRPLFENFVQDLLATVNKPEWPATELLLSLLGKMLVKNFSNK------GTDMSLRVASLDYLGVVA 852
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: A0A7F5R8P1_AGRPL (Nipped-B protein n=1 Tax=Agrilus planipennis TaxID=224129 RepID=A0A7F5R8P1_AGRPL) HSP 1 Score: 65.5 bits (158), Expect = 2.740e-10 Identity = 38/90 (42.22%), Postives = 50/90 (55.56%), Query Frame = 1
Query: 13 ARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVA 282
A A F++ FLS+C K E +++PL N V DLLATV PEWPA ELLL L LVK+ ++ D + ++D LG VA
Sbjct: 769 ATTTAGTFLAVFLSKCGSKSEDIDYRPLFENFVQDLLATVNKPEWPATELLLSLLGKMLVKNFSNK------GTDMSLRVASLDYLGVVA 852
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Match: UPI0006261516 (nipped-B-like protein n=1 Tax=Orussus abietinus TaxID=222816 RepID=UPI0006261516) HSP 1 Score: 63.9 bits (154), Expect = 9.560e-10 Identity = 38/90 (42.22%), Postives = 49/90 (54.44%), Query Frame = 1
Query: 13 ARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPAAELLLHALCGALVKDLKDQKGGSSGARDQQYCLMAMDVLGRVA 282
A A F++ FLS+C K E +++PL N V DLLATV PEWPAAELLL L LV ++ D + ++D LG VA
Sbjct: 924 ATRTAGNFLTVFLSKCGSKGEEIDYRPLFENFVQDLLATVNKPEWPAAELLLSLLGNLLVGHFSNKSS------DMSLRVASLDYLGVVA 1007 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12612.2160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12612.2160.1 >prot_Ecto-sp13_S_contig12612.2160.1 ID=prot_Ecto-sp13_S_contig12612.2160.1|Name=mRNA_Ecto-sp13_S_contig12612.2160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=98bp GLNPARNAATYFVSRFLSRCAGKEESANFQPLLANTVDDLLATVLLPEWPback to top mRNA from alignment at Ecto-sp13_S_contig12612:747..1784- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12612.2160.1 ID=mRNA_Ecto-sp13_S_contig12612.2160.1|Name=mRNA_Ecto-sp13_S_contig12612.2160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1038bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12612:747..1784- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12612:747..1784- >mRNA_Ecto-sp13_S_contig12612.2160.1 ID=mRNA_Ecto-sp13_S_contig12612.2160.1|Name=mRNA_Ecto-sp13_S_contig12612.2160.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=294bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12612:747..1784- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |