mRNA_Ecto-sp13_S_contig99528.21600.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig99528.21600.1
Unique NamemRNA_Ecto-sp13_S_contig99528.21600.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig99528.21600.1 vs. uniprot
Match: A0A6H5KGX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KGX1_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 8.660e-27
Identity = 47/48 (97.92%), Postives = 48/48 (100.00%), Query Frame = 1
Query:    1 PYFTQQAGKARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNLEI 144
            PYFTQQAGKARWTLSEAEDTRGAGLWVWGLFK+PLYPFLLLQVNNLEI
Sbjct:  153 PYFTQQAGKARWTLSEAEDTRGAGLWVWGLFKEPLYPFLLLQVNNLEI 200          
BLAST of mRNA_Ecto-sp13_S_contig99528.21600.1 vs. uniprot
Match: A0A7S2IJE4_9STRA (Hypothetical protein n=2 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IJE4_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.570e-11
Identity = 27/40 (67.50%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   25 KARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNLEI 144
            K+RW LSE  D R  GLWVWGLFK+PLYPF+LLQ+   EI
Sbjct:   12 KSRWILSEDPDDRKDGLWVWGLFKEPLYPFMLLQLETEEI 51          
BLAST of mRNA_Ecto-sp13_S_contig99528.21600.1 vs. uniprot
Match: A0A7S4SSA2_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SSA2_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.370e-10
Identity = 26/40 (65.00%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   25 KARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNLEI 144
            K+RW LSE  + R  GLWVWGLFK+PLYPF+LLQ+ + EI
Sbjct:  110 KSRWILSEDPNERKDGLWVWGLFKEPLYPFMLLQLESEEI 149          
BLAST of mRNA_Ecto-sp13_S_contig99528.21600.1 vs. uniprot
Match: A0A7S0T816_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0T816_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.250e-10
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 1
Query:    1 PYFTQQAGKARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVN 132
            P  T  +G  RWTLSE  D R  GLW+WGLFK+PLYPFLLLQ +
Sbjct:  125 PQMTVTSG--RWTLSEDPDDRKDGLWIWGLFKEPLYPFLLLQFD 166          
BLAST of mRNA_Ecto-sp13_S_contig99528.21600.1 vs. uniprot
Match: B5YME2_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YME2_THAPS)

HSP 1 Score: 61.2 bits (147), Expect = 4.550e-10
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query:   25 KARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNLEI 144
            ++RWTLSE  + +  GLW+WGLFK+PLYPF+LLQ+   E+
Sbjct:   99 RSRWTLSEDPNDKKDGLWIWGLFKEPLYPFMLLQIETKEL 138          
BLAST of mRNA_Ecto-sp13_S_contig99528.21600.1 vs. uniprot
Match: A0A7S0CIY7_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CIY7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.410e-9
Identity = 22/43 (51.16%), Postives = 31/43 (72.09%), Query Frame = 1
Query:   16 QAGKARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNLEI 144
            +   +RW LSE  + R  GLW+WGLFK+PLYPF+LL++   E+
Sbjct:   23 ELSSSRWMLSEDPEDRQFGLWIWGLFKEPLYPFMLLEIETKEM 65          
BLAST of mRNA_Ecto-sp13_S_contig99528.21600.1 vs. uniprot
Match: A0A7S1E4Z9_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E4Z9_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.530e-9
Identity = 24/37 (64.86%), Postives = 29/37 (78.38%), Query Frame = 1
Query:   25 KARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNN 135
            KA W LSE  + R  GLWVWGLF+DPLYPF+LLQ++ 
Sbjct:    4 KAVWKLSEDPNDRKDGLWVWGLFEDPLYPFMLLQIDT 40          
BLAST of mRNA_Ecto-sp13_S_contig99528.21600.1 vs. uniprot
Match: A0A7S0B098_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B098_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.790e-9
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1
Query:   28 ARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNLEI 144
            +RW LSE    R  GLWVWGLFK+PLYPFLLLQ+   EI
Sbjct:  153 SRWQLSEDPSERKDGLWVWGLFKEPLYPFLLLQMETKEI 191          
BLAST of mRNA_Ecto-sp13_S_contig99528.21600.1 vs. uniprot
Match: A0A7S2G6H0_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G6H0_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.250e-9
Identity = 25/44 (56.82%), Postives = 32/44 (72.73%), Query Frame = 1
Query:    4 YFTQQA-GKARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVN 132
            YF     GK RW LSE  D R  GLW+WGLFK+PLYPF++L+++
Sbjct:  119 YFDSDGKGKNRWLLSEDPDDRKDGLWIWGLFKEPLYPFMILRLS 162          
BLAST of mRNA_Ecto-sp13_S_contig99528.21600.1 vs. uniprot
Match: C1EGI5_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1EGI5_MICCC)

HSP 1 Score: 59.3 bits (142), Expect = 2.660e-9
Identity = 25/45 (55.56%), Postives = 34/45 (75.56%), Query Frame = 1
Query:   16 QAGKARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQV--NNLEI 144
            QAG  RWTL+E  + R AGLW+WGLF++PLYP++LL    N +E+
Sbjct:  111 QAGFHRWTLAEDPNERKAGLWIWGLFEEPLYPYMLLSFDCNRIEV 155          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig99528.21600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGX1_9PHAE8.660e-2797.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2IJE4_9STRA1.570e-1167.50Hypothetical protein n=2 Tax=Helicotheca tamesis T... [more]
A0A7S4SSA2_9STRA3.370e-1065.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S0T816_9STRA4.250e-1063.64Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
B5YME2_THAPS4.550e-1057.50Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S0CIY7_9STRA1.410e-951.16Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S1E4Z9_9STRA1.530e-964.86Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S0B098_9STRA1.790e-966.67Hypothetical protein (Fragment) n=1 Tax=Minutocell... [more]
A0A7S2G6H0_9STRA2.250e-956.82Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
C1EGI5_MICCC2.660e-955.56Uncharacterized protein n=1 Tax=Micromonas commoda... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig99528contigEcto-sp13_S_contig99528:355..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score107.8
Seed ortholog evalue1.4e-21
Seed eggNOG ortholog2880.D8LBK6
Model size144
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2E2US@1,2SA11@2759
Cds size144
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464255.3170588-CDS-Ecto-sp13_S_contig99528:354..4981681464255.3170588-CDS-Ecto-sp13_S_contig99528:354..498Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig99528 355..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig99528.21600.1prot_Ecto-sp13_S_contig99528.21600.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig99528 355..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig99528.21600.1

>prot_Ecto-sp13_S_contig99528.21600.1 ID=prot_Ecto-sp13_S_contig99528.21600.1|Name=mRNA_Ecto-sp13_S_contig99528.21600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
PYFTQQAGKARWTLSEAEDTRGAGLWVWGLFKDPLYPFLLLQVNNLEI
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mRNA from alignment at Ecto-sp13_S_contig99528:355..498-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig99528.21600.1 ID=mRNA_Ecto-sp13_S_contig99528.21600.1|Name=mRNA_Ecto-sp13_S_contig99528.21600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99528:355..498- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTACTTCACTCAGCAAGCTGGCAAAGCGCGCTGGACACTGTCTGAGGC GGAGGACACGCGAGGCGCAGGATTGTGGGTTTGGGGCTTGTTTAAGGACC CGCTCTACCCTTTCCTGTTGTTGCAGGTCAACAACCTGGAAATC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig99528:355..498-

>mRNA_Ecto-sp13_S_contig99528.21600.1 ID=mRNA_Ecto-sp13_S_contig99528.21600.1|Name=mRNA_Ecto-sp13_S_contig99528.21600.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig99528:355..498- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTACTTCACTCAGCAAGCTGGCAAAGCGCGCTGGACACTGTCTGAGGC
GGAGGACACGCGAGGCGCAGGATTGTGGGTTTGGGGCTTGTTTAAGGACC
CGCTCTACCCTTTCCTGTTGTTGCAGGTCAACAACCTGGAAATC
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