prot_Ecto-sp13_S_contig9934.21582.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9934.21582.1
Unique Nameprot_Ecto-sp13_S_contig9934.21582.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length197
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9934.21582.1 vs. uniprot
Match: D7FRD4_ECTSI (Retinitis pigmentosa 2 (X-linked recessive) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRD4_ECTSI)

HSP 1 Score: 280 bits (716), Expect = 1.470e-90
Identity = 176/197 (89.34%), Postives = 179/197 (90.86%), Query Frame = 0 
Query:    1 HRDFTTRSLPRASRQRVGYTEHTHGAVVPITAGMRGFTEAEETCFIVVMPGHIDAVLGKLLAVGGGGDSPILATKSRLLRTKLFRPQMAQSKTFFLGAPSSMAELASSFPVLGMQWAGPGSAEAAVSLLATAGVSVPPSPATXXXXXXXXXXXXXXXXXXXXXXXXXDVGAGNGTSEYYMVAGRGDGGGDDDGRGGS 197
            HRDFTTRSLP ASRQRVGYTE+THGAVVPITAGMRGFTEAEETCFIVVMPGHIDAVLGKLLAVGGGGDSPI AT SRLLRTKLFRPQMAQSKTFF GAPSSMAELASSFPVLGMQWAGPGSAEAAVSLLA AG         XXXXXXXXXXXXXXXXXXXXXX   D+GAGNGTSEYYMVAGRGDGGG+DDGR GS
Sbjct:  198 HRDFTTRSLPEASRQRVGYTENTHGAVVPITAGMRGFTEAEETCFIVVMPGHIDAVLGKLLAVGGGGDSPISATTSRLLRTKLFRPQMAQSKTFFSGAPSSMAELASSFPVLGMQWAGPGSAEAAVSLLAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSADIGAGNGTSEYYMVAGRGDGGGNDDGRSGS 394
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9934.21582.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRD4_ECTSI1.470e-9089.34Retinitis pigmentosa 2 (X-linked recessive) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9934contigEcto-sp13_S_contig9934:380..3701 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9934.21582.1mRNA_Ecto-sp13_S_contig9934.21582.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9934 380..3702 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9934.21582.1 ID=prot_Ecto-sp13_S_contig9934.21582.1|Name=mRNA_Ecto-sp13_S_contig9934.21582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
HRDFTTRSLPRASRQRVGYTEHTHGAVVPITAGMRGFTEAEETCFIVVMP
GHIDAVLGKLLAVGGGGDSPILATKSRLLRTKLFRPQMAQSKTFFLGAPS
SMAELASSFPVLGMQWAGPGSAEAAVSLLATAGVSVPPSPATPPPPPPNE
SSARKGKKPKEKANNSADVGAGNGTSEYYMVAGRGDGGGDDDGRGGS
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