mRNA_Ecto-sp13_S_contig9934.21582.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig9934.21582.1
Unique Name	mRNA_Ecto-sp13_S_contig9934.21582.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	284.6
Seed ortholog evalue	3.4e-74
Seed eggNOG ortholog	2880.D7FRD4
Preferred name	RP2
Model size	592
KEGG ko	ko:K18272
Hectar predicted targeting category	other localisation
GOs	GO:0001654,GO:0001655,GO:0001822,GO:0001894,GO:0001895,GO:0001947,GO:0002009,GO:0003007,GO:0003008,GO:0003143,GO:0003407,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005814,GO:0005815,GO:0005856,GO:0005886,GO:0005929,GO:0006457,GO:0006810,GO:0006892,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007600,GO:0007601,GO:0008047,GO:0008150,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0010842,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016604,GO:0022008,GO:0030154,GO:0030182,GO:0030234,GO:0030695,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0035050,GO:0035239,GO:0035295,GO:0035845,GO:0036064,GO:0042461,GO:0042592,GO:0042995,GO:0043010,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044451,GO:0044459,GO:0044463,GO:0044464,GO:0045494,GO:0046530,GO:0048193,GO:0048468,GO:0048513,GO:0048562,GO:0048568,GO:0048592,GO:0048593,GO:0048598,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0048869,GO:0048871,GO:0050790,GO:0050877,GO:0050953,GO:0051082,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0060041,GO:0060042,GO:0060249,GO:0060429,GO:0060562,GO:0060589,GO:0061371,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071840,GO:0071944,GO:0072001,GO:0072359,GO:0090596,GO:0097708,GO:0098590,GO:0098772,GO:0120025,GO:0120038,GO:1990075
Exons	4
EggNOG free text desc.	post-chaperonin tubulin folding pathway
EggNOG OGs	KOG2512@1,KOG2512@2759
Ec32 ortholog description	retinitis pigmentosa 2 (X-linked recessive)
Ec32 ortholog	Ec-21_002520.1
Cds size	591
COG Functional cat.	Q
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko04147

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig9934:380..3702+
coding sequence from alignment at Ecto-sp13_S_contig9934:380..3702+

protein sequence of mRNA_Ecto-sp13_S_contig9934.21582.1

>prot_Ecto-sp13_S_contig9934.21582.1 ID=prot_Ecto-sp13_S_contig9934.21582.1|Name=mRNA_Ecto-sp13_S_contig9934.21582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
HRDFTTRSLPRASRQRVGYTEHTHGAVVPITAGMRGFTEAEETCFIVVMP
GHIDAVLGKLLAVGGGGDSPILATKSRLLRTKLFRPQMAQSKTFFLGAPS
SMAELASSFPVLGMQWAGPGSAEAAVSLLATAGVSVPPSPATPPPPPPNE
SSARKGKKPKEKANNSADVGAGNGTSEYYMVAGRGDGGGDDDGRGGS

mRNA from alignment at Ecto-sp13_S_contig9934:380..3702+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig9934.21582.1 ID=mRNA_Ecto-sp13_S_contig9934.21582.1|Name=mRNA_Ecto-sp13_S_contig9934.21582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3323bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9934:380..3702+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGGGACTTCACCACACGCAGCCTGCCGAGGGCCTCGAGGCAAAGAGT
GGGGTACACAGAACACACTCACGGAGCAGTCGTCCCTATTACTGGTGAGA
AAAGTTGAAGAGACATTCCGACTTCGTGATTACGTACGGAGGGGGGGGGC
GGTACTGGAATGGGTTACGGTTCGATTTTCCGTACCAAAAAAATCAGTGG
GGAGTCTATTCGTAGCGCCTGTCCCTTTCGAAGACAAGGCAATTGCCTGT
CTTTATTTTATGTAGGAATATCACGATTGTGGTCAGAGCTTTTGTGTCTA
GAAATACGTGGCGTTGAACATAAAGTCACCGCGATCTACGGCACAACATC
TACACCATCATTGACGGAACTTTTCAACACTGAAAAAATGAAAACCGCCT
AGAGTAGTGGAACATTTGGGGGTAGGTGTTGAGCCACCTGAAGTTAAGAG
GAAGTTCGGGTTGGTAAAAATGTTGTAAGGTATGGGTTTGTGGAACGCAA
GAAACAAACCCTGCCATGTCTTGTTTCTCGCTTGCCGAAAGAGTCCAGGA
TGCATCCGATCCCATAGGAAAACTCGAAACGAGTCACATCGCTTTTTTGG
GAGCGACAAGTTGCTAAATGTTTCTCGCAACGTTCCTCATGTACGCTCTT
CATGGGAGTAAAACTTTGAGATTGATGTTGTGAAAATTTTGCTTTCGGAC
ACATATCGTGCGATCTTCAGCAAAACTTTTGCAGTTTCTTGGCGACGACG
GTGTCGAACAAAATTTACGCGGCGAGACTTCCGCCAATCCACGTCAAGCA
CCTACCCCTACCACACATGTACACCCCCTCTCTAGCTTCGATTTGTAGGC
ACCGTGTTCACCGACGTGCCTCATGAATGGTATCTCGAAGGAGGTAATGC
CATGGGCTGCTGGTCGGTGCCTAGATTTGGCGCCGTGAGGCGCCGAATGC
GCAGTAAAAATATATTATGTTGACTCAAGTGCGGTGATAATGGTCGTGCC
GCGGGGTTGGTTTTTGACCGATAACTTTCCGAAGGAGGAAGCAACAGCAG
CAGCGAGGCAACTCGGCGCGAGGTAGTTCTTTACTCCATTTTTCAATCCC
AAGGTTTGCTGCCGTGTCGTATCGTACGCGTCGGGAAGACGTCTTGGTTG
GCCCTGCAATACCCGCGTCAGAGAGCGGTTGGTTCAAGTTCGCGGGAATG
GTGTGCTCATGGTTTGGGTTTGCAGCGATAACTTTTCGAAGGAGGAGGCA
ACAGCAACAGCCATGCCGCTCCGAGGGAGGTAGCTCTACCCAGCACCTTT
TTGGTACGAGGTTAGATGTCTTGGGGTATCGTGGCTGTGGAAAAAAGGTT
CAAACTACCCACTCCCGCACCCTCTTGCCAGTTTCTTCGTGGTGTGGTAT
GAAGGGGGTGTGTCTGCTCCTCGCCGTCGCAGAAAAAAAATAGAAAGATC
ACGCCTCCATATTCCACCAGTCCCGTGAAGACAACTTCCTGCGCCCCATG
GTAAGCGTGCCACAAAAGTGTTATTGAAAAACATTACCGACTAAACGTTA
CAATAAAACTTGTAACTTTTTTCGCAGCTTTGTGCTCCCATTAGAAACGG
TGTCATCAGCAATTTATTGTCAAATGTCTCCATTGTCGGGATCAAAGTTG
CAGAAACAGCATCTAACATGTCCTCGAAAACTTCCCACCATCGCATTTGG
AAATCACTGGGTGATCAACAGCGGGGATGAGGGGCTTTACGGAGGCCGAA
GAGACCTGCTTCATCGTGGTGATGCCGGGGCACATCGACGCCGTTCTGGG
GAAGCTACTGGCCGTAGGAGGCGGGGGAGATTCCCCGATATTGGCGACGA
AGTCAAGGCTGCTGAGGACTAAGCTCTTCCGCCCGCAAATGGTGGGTAGT
AGACAAGAGGTGGCCAAAGGAGTGTGTGGTTGCTTGATGTCGTATCTGGA
CATTGATGAGTGTATTTATCTGCCCATTTTCTCTTTGTGAAGCATATTTT
TCGCAGCGCAACTTATCGCGAGAAGAGGTTGACGAAGAATGAACTATATC
CTTCCTTCGTCGTTTTTTGATCGATTAGACTACCTCACGGGGAGTTTCGA
TCTACTGATCAGCTGCTGAAGCAGGCAGGGGAGGGAGTCGATTGATATCA
AGAAACGAAAGTGTGGACATTGTTATTTCATAGAAGCGAAGTTGAAGAGC
TAGACGCTCTTTTCAAATCAAGTCGATTTCCTGAAGCATTTTCATGGATC
GATGCCAGTTCGACAGCCGACAGACAGGCCGCCAATTTGCTACAGAGAAG
AGTACGGCATGGCCAAATTGCGTCTCTGAGGTATGAAAAACTGCAAGCCT
ATCAAATGTGTTCGTTGTCCATCACCCGTCCTTTCATCTGCTGAGGCTAA
GCTACCTTCTTCATCCTGCCGCAACATCGCCCCGACATGCGCAACTAGCC
CCTACACACGAAGGACCCACTGTTTCACCCTGCTATATCCACATCGTATC
GGTGTGGTCATCTTCGGAACAAATGACAGGCCCAGAGCAAGACTTTCTTC
TTAGGAGCCCCATCCTCCATGGCCGAACTTGCGTCCTCCTTCCCCGTGCT
GGGAATGCAGTGGGCTGGCCCTGGCAGTGCCGAGGCGGCGGTGTCCTTGC
TGGCAACCGCCGGAGTTTCCGTTCCCCCGTCGCCGGCGACGCCCCCCCCG
CCGCCGCCGAACGAGAGTAGTGCCAGAAAGGGAAAGAAGCCCAAGGTACA
TTAAAACAGTACAAGAAGTACAGGATCAACGACGCTACAAGAAGCGAGAT
ATGTCACGCTAAATTTAATGTTCCAGAGAAGCGCGATATCAACCTTCAGC
CTGACGAATTTTATGTTTTTTTGGTGGATATGAAGGGATCGGAGGGCCAA
TACGGAAGGATCGCTGGCAGCACCTACCAGACCAGGGGTTATTGCCCGCC
ACGTCACACAATTTTCCTCTTTGGTTGACTTAGATTTGAAGGTGTTTTCC
GCAAACCCAGTGTCAACATAGTCTGCCTATCCCCCCAAAAGCTACAGTAT
CCATGAGATGGACAACAACCAAGCTTGGTGAAAAGTGCAAGCAAGCTTGG
TGGATACGAAGGTGATCCTAGAAGAGATCTGTCCGCTTCACTTGAATTTG
TCCCACTCTTCTTGCCGAACAGCTCCACACGTCTCTGCTTGCTCATACTA
TTGTTTCGCAGGAAAAAGCCAACAACTCCGCCGACGTCGGAGCCGGGAAT
GGCACTTCGGAGTACTACATGGTCGCTGGTAGAGGCGACGGTGGCGGTGA
CGATGACGGTAGGGGTGGTAGTG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9934:380..3702+

>mRNA_Ecto-sp13_S_contig9934.21582.1 ID=mRNA_Ecto-sp13_S_contig9934.21582.1|Name=mRNA_Ecto-sp13_S_contig9934.21582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9934:380..3702+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGGGACTTCACCACACGCAGCCTGCCGAGGGCCTCGAGGCAAAGAGT
GGGGTACACAGAACACACTCACGGAGCAGTCGTCCCTATTACTGCGGGGA
TGAGGGGCTTTACGGAGGCCGAAGAGACCTGCTTCATCGTGGTGATGCCG
GGGCACATCGACGCCGTTCTGGGGAAGCTACTGGCCGTAGGAGGCGGGGG
AGATTCCCCGATATTGGCGACGAAGTCAAGGCTGCTGAGGACTAAGCTCT
TCCGCCCGCAAATGGCCCAGAGCAAGACTTTCTTCTTAGGAGCCCCATCC
TCCATGGCCGAACTTGCGTCCTCCTTCCCCGTGCTGGGAATGCAGTGGGC
TGGCCCTGGCAGTGCCGAGGCGGCGGTGTCCTTGCTGGCAACCGCCGGAG
TTTCCGTTCCCCCGTCGCCGGCGACGCCCCCCCCGCCGCCGCCGAACGAG
AGTAGTGCCAGAAAGGGAAAGAAGCCCAAGGAAAAAGCCAACAACTCCGC
CGACGTCGGAGCCGGGAATGGCACTTCGGAGTACTACATGGTCGCTGGTA
GAGGCGACGGTGGCGGTGACGATGACGGTAGGGGTGGTAGT

mRNA_Ecto-sp13_S_contig9934.21582.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

ZOOM

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POSITION

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