mRNA_Ecto-sp13_S_contig9934.21582.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9934.21582.1
Unique NamemRNA_Ecto-sp13_S_contig9934.21582.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9934.21582.1 vs. uniprot
Match: D7FRD4_ECTSI (Retinitis pigmentosa 2 (X-linked recessive) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRD4_ECTSI)

HSP 1 Score: 280 bits (716), Expect = 1.470e-90
Identity = 176/197 (89.34%), Postives = 179/197 (90.86%), Query Frame = 1 
Query:    1 HRDFTTRSLPRASRQRVGYTEHTHGAVVPITAGMRGFTEAEETCFIVVMPGHIDAVLGKLLAVGGGGDSPILATKSRLLRTKLFRPQMAQSKTFFLGAPSSMAELASSFPVLGMQWAGPGSAEAAVSLLATAGVSVPPSPATXXXXXXXXXXXXXXXXXXXXXXXXXDVGAGNGTSEYYMVAGRGDGGGDDDGRGGS 591
            HRDFTTRSLP ASRQRVGYTE+THGAVVPITAGMRGFTEAEETCFIVVMPGHIDAVLGKLLAVGGGGDSPI AT SRLLRTKLFRPQMAQSKTFF GAPSSMAELASSFPVLGMQWAGPGSAEAAVSLLA AG         XXXXXXXXXXXXXXXXXXXXXX   D+GAGNGTSEYYMVAGRGDGGG+DDGR GS
Sbjct:  198 HRDFTTRSLPEASRQRVGYTENTHGAVVPITAGMRGFTEAEETCFIVVMPGHIDAVLGKLLAVGGGGDSPISATTSRLLRTKLFRPQMAQSKTFFSGAPSSMAELASSFPVLGMQWAGPGSAEAAVSLLAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSADIGAGNGTSEYYMVAGRGDGGGNDDGRSGS 394
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9934.21582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRD4_ECTSI1.470e-9089.34Retinitis pigmentosa 2 (X-linked recessive) n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9934contigEcto-sp13_S_contig9934:380..3702 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score284.6
Seed ortholog evalue3.4e-74
Seed eggNOG ortholog2880.D7FRD4
Preferred nameRP2
Model size592
KEGG koko:K18272
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001655,GO:0001822,GO:0001894,GO:0001895,GO:0001947,GO:0002009,GO:0003007,GO:0003008,GO:0003143,GO:0003407,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005814,GO:0005815,GO:0005856,GO:0005886,GO:0005929,GO:0006457,GO:0006810,GO:0006892,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007600,GO:0007601,GO:0008047,GO:0008150,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0010842,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016604,GO:0022008,GO:0030154,GO:0030182,GO:0030234,GO:0030695,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0035050,GO:0035239,GO:0035295,GO:0035845,GO:0036064,GO:0042461,GO:0042592,GO:0042995,GO:0043010,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044451,GO:0044459,GO:0044463,GO:0044464,GO:0045494,GO:0046530,GO:0048193,GO:0048468,GO:0048513,GO:0048562,GO:0048568,GO:0048592,GO:0048593,GO:0048598,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0048869,GO:0048871,GO:0050790,GO:0050877,GO:0050953,GO:0051082,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0060041,GO:0060042,GO:0060249,GO:0060429,GO:0060562,GO:0060589,GO:0061371,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071840,GO:0071944,GO:0072001,GO:0072359,GO:0090596,GO:0097708,GO:0098590,GO:0098772,GO:0120025,GO:0120038,GO:1990075
Exons4
EggNOG free text desc.post-chaperonin tubulin folding pathway
EggNOG OGsKOG2512@1,KOG2512@2759
Ec32 ortholog descriptionretinitis pigmentosa 2 (X-linked recessive)
Ec32 orthologEc-21_002520.1
Cds size591
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464253.937563-CDS-Ecto-sp13_S_contig9934:379..4731681464253.937563-CDS-Ecto-sp13_S_contig9934:379..473Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9934 380..473 +
1681464253.9482749-CDS-Ecto-sp13_S_contig9934:2100..22701681464253.9482749-CDS-Ecto-sp13_S_contig9934:2100..2270Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9934 2101..2270 +
1681464253.95706-CDS-Ecto-sp13_S_contig9934:2908..31241681464253.95706-CDS-Ecto-sp13_S_contig9934:2908..3124Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9934 2909..3124 +
1681464253.9657218-CDS-Ecto-sp13_S_contig9934:3590..37011681464253.9657218-CDS-Ecto-sp13_S_contig9934:3590..3701Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9934 3591..3701 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9934.21582.1prot_Ecto-sp13_S_contig9934.21582.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9934 380..3701 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9934.21582.1

>prot_Ecto-sp13_S_contig9934.21582.1 ID=prot_Ecto-sp13_S_contig9934.21582.1|Name=mRNA_Ecto-sp13_S_contig9934.21582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
HRDFTTRSLPRASRQRVGYTEHTHGAVVPITAGMRGFTEAEETCFIVVMP
GHIDAVLGKLLAVGGGGDSPILATKSRLLRTKLFRPQMAQSKTFFLGAPS
SMAELASSFPVLGMQWAGPGSAEAAVSLLATAGVSVPPSPATPPPPPPNE
SSARKGKKPKEKANNSADVGAGNGTSEYYMVAGRGDGGGDDDGRGGS
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mRNA from alignment at Ecto-sp13_S_contig9934:380..3702+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9934.21582.1 ID=mRNA_Ecto-sp13_S_contig9934.21582.1|Name=mRNA_Ecto-sp13_S_contig9934.21582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3323bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9934:380..3702+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGGGACTTCACCACACGCAGCCTGCCGAGGGCCTCGAGGCAAAGAGT
GGGGTACACAGAACACACTCACGGAGCAGTCGTCCCTATTACTGGTGAGA
AAAGTTGAAGAGACATTCCGACTTCGTGATTACGTACGGAGGGGGGGGGC
GGTACTGGAATGGGTTACGGTTCGATTTTCCGTACCAAAAAAATCAGTGG
GGAGTCTATTCGTAGCGCCTGTCCCTTTCGAAGACAAGGCAATTGCCTGT
CTTTATTTTATGTAGGAATATCACGATTGTGGTCAGAGCTTTTGTGTCTA
GAAATACGTGGCGTTGAACATAAAGTCACCGCGATCTACGGCACAACATC
TACACCATCATTGACGGAACTTTTCAACACTGAAAAAATGAAAACCGCCT
AGAGTAGTGGAACATTTGGGGGTAGGTGTTGAGCCACCTGAAGTTAAGAG
GAAGTTCGGGTTGGTAAAAATGTTGTAAGGTATGGGTTTGTGGAACGCAA
GAAACAAACCCTGCCATGTCTTGTTTCTCGCTTGCCGAAAGAGTCCAGGA
TGCATCCGATCCCATAGGAAAACTCGAAACGAGTCACATCGCTTTTTTGG
GAGCGACAAGTTGCTAAATGTTTCTCGCAACGTTCCTCATGTACGCTCTT
CATGGGAGTAAAACTTTGAGATTGATGTTGTGAAAATTTTGCTTTCGGAC
ACATATCGTGCGATCTTCAGCAAAACTTTTGCAGTTTCTTGGCGACGACG
GTGTCGAACAAAATTTACGCGGCGAGACTTCCGCCAATCCACGTCAAGCA
CCTACCCCTACCACACATGTACACCCCCTCTCTAGCTTCGATTTGTAGGC
ACCGTGTTCACCGACGTGCCTCATGAATGGTATCTCGAAGGAGGTAATGC
CATGGGCTGCTGGTCGGTGCCTAGATTTGGCGCCGTGAGGCGCCGAATGC
GCAGTAAAAATATATTATGTTGACTCAAGTGCGGTGATAATGGTCGTGCC
GCGGGGTTGGTTTTTGACCGATAACTTTCCGAAGGAGGAAGCAACAGCAG
CAGCGAGGCAACTCGGCGCGAGGTAGTTCTTTACTCCATTTTTCAATCCC
AAGGTTTGCTGCCGTGTCGTATCGTACGCGTCGGGAAGACGTCTTGGTTG
GCCCTGCAATACCCGCGTCAGAGAGCGGTTGGTTCAAGTTCGCGGGAATG
GTGTGCTCATGGTTTGGGTTTGCAGCGATAACTTTTCGAAGGAGGAGGCA
ACAGCAACAGCCATGCCGCTCCGAGGGAGGTAGCTCTACCCAGCACCTTT
TTGGTACGAGGTTAGATGTCTTGGGGTATCGTGGCTGTGGAAAAAAGGTT
CAAACTACCCACTCCCGCACCCTCTTGCCAGTTTCTTCGTGGTGTGGTAT
GAAGGGGGTGTGTCTGCTCCTCGCCGTCGCAGAAAAAAAATAGAAAGATC
ACGCCTCCATATTCCACCAGTCCCGTGAAGACAACTTCCTGCGCCCCATG
GTAAGCGTGCCACAAAAGTGTTATTGAAAAACATTACCGACTAAACGTTA
CAATAAAACTTGTAACTTTTTTCGCAGCTTTGTGCTCCCATTAGAAACGG
TGTCATCAGCAATTTATTGTCAAATGTCTCCATTGTCGGGATCAAAGTTG
CAGAAACAGCATCTAACATGTCCTCGAAAACTTCCCACCATCGCATTTGG
AAATCACTGGGTGATCAACAGCGGGGATGAGGGGCTTTACGGAGGCCGAA
GAGACCTGCTTCATCGTGGTGATGCCGGGGCACATCGACGCCGTTCTGGG
GAAGCTACTGGCCGTAGGAGGCGGGGGAGATTCCCCGATATTGGCGACGA
AGTCAAGGCTGCTGAGGACTAAGCTCTTCCGCCCGCAAATGGTGGGTAGT
AGACAAGAGGTGGCCAAAGGAGTGTGTGGTTGCTTGATGTCGTATCTGGA
CATTGATGAGTGTATTTATCTGCCCATTTTCTCTTTGTGAAGCATATTTT
TCGCAGCGCAACTTATCGCGAGAAGAGGTTGACGAAGAATGAACTATATC
CTTCCTTCGTCGTTTTTTGATCGATTAGACTACCTCACGGGGAGTTTCGA
TCTACTGATCAGCTGCTGAAGCAGGCAGGGGAGGGAGTCGATTGATATCA
AGAAACGAAAGTGTGGACATTGTTATTTCATAGAAGCGAAGTTGAAGAGC
TAGACGCTCTTTTCAAATCAAGTCGATTTCCTGAAGCATTTTCATGGATC
GATGCCAGTTCGACAGCCGACAGACAGGCCGCCAATTTGCTACAGAGAAG
AGTACGGCATGGCCAAATTGCGTCTCTGAGGTATGAAAAACTGCAAGCCT
ATCAAATGTGTTCGTTGTCCATCACCCGTCCTTTCATCTGCTGAGGCTAA
GCTACCTTCTTCATCCTGCCGCAACATCGCCCCGACATGCGCAACTAGCC
CCTACACACGAAGGACCCACTGTTTCACCCTGCTATATCCACATCGTATC
GGTGTGGTCATCTTCGGAACAAATGACAGGCCCAGAGCAAGACTTTCTTC
TTAGGAGCCCCATCCTCCATGGCCGAACTTGCGTCCTCCTTCCCCGTGCT
GGGAATGCAGTGGGCTGGCCCTGGCAGTGCCGAGGCGGCGGTGTCCTTGC
TGGCAACCGCCGGAGTTTCCGTTCCCCCGTCGCCGGCGACGCCCCCCCCG
CCGCCGCCGAACGAGAGTAGTGCCAGAAAGGGAAAGAAGCCCAAGGTACA
TTAAAACAGTACAAGAAGTACAGGATCAACGACGCTACAAGAAGCGAGAT
ATGTCACGCTAAATTTAATGTTCCAGAGAAGCGCGATATCAACCTTCAGC
CTGACGAATTTTATGTTTTTTTGGTGGATATGAAGGGATCGGAGGGCCAA
TACGGAAGGATCGCTGGCAGCACCTACCAGACCAGGGGTTATTGCCCGCC
ACGTCACACAATTTTCCTCTTTGGTTGACTTAGATTTGAAGGTGTTTTCC
GCAAACCCAGTGTCAACATAGTCTGCCTATCCCCCCAAAAGCTACAGTAT
CCATGAGATGGACAACAACCAAGCTTGGTGAAAAGTGCAAGCAAGCTTGG
TGGATACGAAGGTGATCCTAGAAGAGATCTGTCCGCTTCACTTGAATTTG
TCCCACTCTTCTTGCCGAACAGCTCCACACGTCTCTGCTTGCTCATACTA
TTGTTTCGCAGGAAAAAGCCAACAACTCCGCCGACGTCGGAGCCGGGAAT
GGCACTTCGGAGTACTACATGGTCGCTGGTAGAGGCGACGGTGGCGGTGA
CGATGACGGTAGGGGTGGTAGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9934:380..3702+

>mRNA_Ecto-sp13_S_contig9934.21582.1 ID=mRNA_Ecto-sp13_S_contig9934.21582.1|Name=mRNA_Ecto-sp13_S_contig9934.21582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9934:380..3702+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACAGGGACTTCACCACACGCAGCCTGCCGAGGGCCTCGAGGCAAAGAGT
GGGGTACACAGAACACACTCACGGAGCAGTCGTCCCTATTACTGCGGGGA
TGAGGGGCTTTACGGAGGCCGAAGAGACCTGCTTCATCGTGGTGATGCCG
GGGCACATCGACGCCGTTCTGGGGAAGCTACTGGCCGTAGGAGGCGGGGG
AGATTCCCCGATATTGGCGACGAAGTCAAGGCTGCTGAGGACTAAGCTCT
TCCGCCCGCAAATGGCCCAGAGCAAGACTTTCTTCTTAGGAGCCCCATCC
TCCATGGCCGAACTTGCGTCCTCCTTCCCCGTGCTGGGAATGCAGTGGGC
TGGCCCTGGCAGTGCCGAGGCGGCGGTGTCCTTGCTGGCAACCGCCGGAG
TTTCCGTTCCCCCGTCGCCGGCGACGCCCCCCCCGCCGCCGCCGAACGAG
AGTAGTGCCAGAAAGGGAAAGAAGCCCAAGGAAAAAGCCAACAACTCCGC
CGACGTCGGAGCCGGGAATGGCACTTCGGAGTACTACATGGTCGCTGGTA
GAGGCGACGGTGGCGGTGACGATGACGGTAGGGGTGGTAGT
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