prot_Ecto-sp13_S_contig9928.21574.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9928.21574.1
Unique Nameprot_Ecto-sp13_S_contig9928.21574.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length238
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9928.21574.1 vs. uniprot
Match: A0A6H5K8R4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R4_9PHAE)

HSP 1 Score: 330 bits (846), Expect = 1.570e-100
Identity = 193/225 (85.78%), Postives = 194/225 (86.22%), Query Frame = 0 
Query:    1 PPPAHTTFLPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQKDPADQELQGTEGGRSSVATGGASAGVSXXXXXXXXXXXXXXXXXXXXXXXXXEGAYFASVLLRQEAPVGGGERNSLDASWVLTEGTSGDGDGGGRTVGGSGGGVASVCEALGRVAHTHGALGTLFEDGLQWIVREFARRSPACRETLGRLGALPEETVTAAATV 225
            PPPAHTTFLPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQ DPADQELQGTEGGRSS AT        X           XXXXXXXXXX   EGAYFASVLLRQE  VGG +RNSLDASWVLTEGTSGDGDGGGRTV  SGGGVASVCEALGRVAHTHGALGTLFEDGLQWIVREFARRSPACRETLGRLGALPEETV  AATV
Sbjct:  943 PPPAHTTFLPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQ-DPADQELQGTEGGRSSGATXXXXXXXXXGGVEETKSSGGXXXXXXXXXXNSHEGAYFASVLLRQEGSVGGVKRNSLDASWVLTEGTSGDGDGGGRTVSWSGGGVASVCEALGRVAHTHGALGTLFEDGLQWIVREFARRSPACRETLGRLGALPEETVAVAATV 1166
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9928.21574.1 vs. uniprot
Match: D7G3D4_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D4_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 1.290e-83
Identity = 181/226 (80.09%), Postives = 182/226 (80.53%), Query Frame = 0 
Query:    1 PPPAHTTFLPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQKDPADQELQGTEGGRSSVATGGASAGVSXXXXXXXXXXXXXXXXXXXXXXXXXEGAYFASVLLRQEAPVGGGERNSLDASWVLTEGTSGDGDGGG-----RTVGGSGGGVASVCEALGRVAHTHGALGTLFEDGLQWIVREFARRSPACRETLGRLGALPEETVTA 221
            PPPAH TF+PVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQKDP D ELQG E GRSS A    SA V      XXXXXXXXXXXXXXXXXXXX          RQEA VGGGERNSLDASWVLTEG SGD          RTV   GGGVASVCEALGRV HTHGALGTLFEDGLQWIVREFARRSP CRETLGRLGALPEETVTA
Sbjct:  161 PPPAHATFVPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQKDPEDHELQGKESGRSSGAAXXXSA-VDASGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQEASVGGGERNSLDASWVLTEGASGDXXXXXXXXXXRTVSSGGGGVASVCEALGRVVHTHGALGTLFEDGLQWIVREFARRSPVCRETLGRLGALPEETVTA 385
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9928.21574.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8R4_9PHAE1.570e-10085.78E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
D7G3D4_ECTSI1.290e-8380.09E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9928contigEcto-sp13_S_contig9928:3827..5038 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9928.21574.1mRNA_Ecto-sp13_S_contig9928.21574.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9928 3825..5038 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9928.21574.1 ID=prot_Ecto-sp13_S_contig9928.21574.1|Name=mRNA_Ecto-sp13_S_contig9928.21574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp
PPPAHTTFLPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQ
IITLQLHGLQKDPADQELQGTEGGRSSVATGGASAGVSSGGVEETKSSGG
GGGGGRSSSSNNHEGAYFASVLLRQEAPVGGGERNSLDASWVLTEGTSGD
GDGGGRTVGGSGGGVASVCEALGRVAHTHGALGTLFEDGLQWIVREFARR
SPACRETLGRLGALPEETVTAAATVSGGAGGDKGVAVG
back to top