Homology
BLAST of mRNA_Ecto-sp13_S_contig9928.21574.1 vs. uniprot
Match:
A0A6H5K8R4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8R4_9PHAE)
HSP 1 Score: 330 bits (846), Expect = 1.570e-100
Identity = 193/225 (85.78%), Postives = 194/225 (86.22%), Query Frame = 1
Query: 1 PPPAHTTFLPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQKDPADQELQGTEGGRSSVATGGASAGVSXXXXXXXXXXXXXXXXXXXXXXXXXEGAYFASVLLRQEAPVGGGERNSLDASWVLTEGTSGDGDGGGRTVGGSGGGVASVCEALGRVAHTHGALGTLFEDGLQWIVREFARRSPACRETLGRLGALPEETVTAAATV 675
PPPAHTTFLPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQ DPADQELQGTEGGRSS AT X XXXXXXXXXX EGAYFASVLLRQE VGG +RNSLDASWVLTEGTSGDGDGGGRTV SGGGVASVCEALGRVAHTHGALGTLFEDGLQWIVREFARRSPACRETLGRLGALPEETV AATV
Sbjct: 943 PPPAHTTFLPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQ-DPADQELQGTEGGRSSGATXXXXXXXXXGGVEETKSSGGXXXXXXXXXXNSHEGAYFASVLLRQEGSVGGVKRNSLDASWVLTEGTSGDGDGGGRTVSWSGGGVASVCEALGRVAHTHGALGTLFEDGLQWIVREFARRSPACRETLGRLGALPEETVAVAATV 1166
BLAST of mRNA_Ecto-sp13_S_contig9928.21574.1 vs. uniprot
Match:
D7G3D4_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D4_ECTSI)
HSP 1 Score: 281 bits (720), Expect = 1.290e-83
Identity = 181/226 (80.09%), Postives = 182/226 (80.53%), Query Frame = 1
Query: 1 PPPAHTTFLPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQKDPADQELQGTEGGRSSVATGGASAGVSXXXXXXXXXXXXXXXXXXXXXXXXXEGAYFASVLLRQEAPVGGGERNSLDASWVLTEGTSGDGDGGG-----RTVGGSGGGVASVCEALGRVAHTHGALGTLFEDGLQWIVREFARRSPACRETLGRLGALPEETVTA 663
PPPAH TF+PVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQKDP D ELQG E GRSS A SA V XXXXXXXXXXXXXXXXXXXX RQEA VGGGERNSLDASWVLTEG SGD RTV GGGVASVCEALGRV HTHGALGTLFEDGLQWIVREFARRSP CRETLGRLGALPEETVTA
Sbjct: 161 PPPAHATFVPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQIITLQLHGLQKDPEDHELQGKESGRSSGAAXXXSA-VDASGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRQEASVGGGERNSLDASWVLTEGASGDXXXXXXXXXXRTVSSGGGGVASVCEALGRVVHTHGALGTLFEDGLQWIVREFARRSPVCRETLGRLGALPEETVTA 385
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9928.21574.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 1.57e-100 / Id = 85.78 Expect = 1.29e-83 / Id = 80.09 Sequence A0A6H5K8R4_9PHAE D7G3D4_ECTSI
Match Name E-value Identity Description
A0A6H5K8R4_9PHAE 1.570e-100 85.78 E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more] D7G3D4_ECTSI 1.290e-83 80.09 E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Stop 0 Start 0 Seed ortholog score 281.2 Seed ortholog evalue 4.5e-73 Seed eggNOG ortholog 2880.D7G3D4 Model size 716 KEGG ko ko:K10625,ko:K10626,ko:K11978 Hectar predicted targeting category other localisation GOs GO:0000003,GO:0000151,GO:0000280,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010029,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010528,GO:0010529,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016597,GO:0016740,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032006,GO:0032007,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033522,GO:0033993,GO:0034641,GO:0035825,GO:0036094,GO:0036211,GO:0040029,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043201,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0050994,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0061982,GO:0065007,GO:0070647,GO:0070728,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071596,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0098542,GO:0140013,GO:0140096,GO:1900140,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141 Exons 2 EggNOG free text desc. E3 ubiquitin-protein ligase EggNOG OGs KOG1139@1,KOG1139@2759 EC 2.3.2.27 Cds size 714 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko01000,ko04121
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681464253.368345-CDS-Ecto-sp13_S_contig9928:3826..4435 1681464253.368345-CDS-Ecto-sp13_S_contig9928:3826..4435 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig9928 3827..4435 - 1681464253.3805823-CDS-Ecto-sp13_S_contig9928:4933..5038 1681464253.3805823-CDS-Ecto-sp13_S_contig9928:4933..5038 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig9928 4934..5038 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9928.21574.1
>prot_Ecto-sp13_S_contig9928.21574.1 ID=prot_Ecto-sp13_S_contig9928.21574.1|Name=mRNA_Ecto-sp13_S_contig9928.21574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp
PPPAHTTFLPVRRGLLYSPVVMSAVRIVLSSYADKTPGKFSDLLLARTLQ back to top mRNA from alignment at Ecto-sp13_S_contig9928:3825..5038-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9928.21574.1 ID=mRNA_Ecto-sp13_S_contig9928.21574.1|Name=mRNA_Ecto-sp13_S_contig9928.21574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1214bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9928:3825..5038- (Ectocarpus species13 EcNAP12_S_4_19m)CCTCCTCCGGCGCACACCACCTTCCTCCCCGTCCGCCGCGGTCTGCTGTA
CAGCCCGGTCGTCATGAGCGCCGTACGGATTGTCCTCTCCAGCTACGCCG
ATAAG GTACGACAGGCGAGCGGGCGGCTTAATCTATCTATCACCCCGGCA
AGACTTTTGCCGTGTTTTTCTTTTTGGTGTGGCTAGCAAGCTGCTGCCCT
TAGGCTGCTACGCTTCGCGCAGCAATTTTTTGTTTTGTTTTGTTTTTCGG
TTGTTATCTACCACGTCCGTGTATGCACGACAACCGACAACATCTAGCCG
CCGTTTATTTCTCTGCGGTTGGGCAACGGGCCCTTGCCATTGCTATTGCT
GTCTCGCAGCGATTGCGGCGTCGCCGTGGTATCCGTTAACTTTGGTACCG
GCATGCGCAAAGCTGTAAAAGTCGACAACCTTCATACCCCCCCCCCCCCC
CCCCCCCCCAACCCCCCTCCCGCAACCCCCCCCCANNNNNNNNNNGGCTC
TGCGTTTGTTACCTTTGACTTGTTGACGAGAAATACAAAAACGAAAAAAA
AGAGACATCTTTCCGCCCCCCCCCCCCCCCTTACCACAAATTCCTGGCCG
CAGACCCCCGGCAAATTCTCGGACCTTCTACTTGCGAGGACGCTGCAGAT
CATCACCCTCCAGCTCCACGGCCTGCAGAAGGACCCGGCGGACCAGGAGT
TGCAGGGCACGGAAGGCGGTCGCAGCAGCGTTGCCACCGGCGGCGCATCT
GCTGGCGTTTCCAGTGGCGGCGTTGAGGAGACGAAGAGCAGCGGAGGCGG
CGGAGGCGGTGGCCGCAGCAGCAGCAGTAACAACCACGAGGGCGCTTACT
TCGCTTCGGTGTTGCTGCGGCAAGAAGCACCCGTGGGCGGAGGCGAGAGA
AACAGCCTCGATGCTTCGTGGGTGTTGACCGAAGGCACTTCCGGCGACGG
CGACGGCGGCGGCCGCACGGTTGGCGGGAGCGGGGGCGGCGTGGCCAGCG
TGTGCGAGGCGCTGGGGAGGGTGGCCCACACCCACGGCGCCCTGGGCACG
CTTTTCGAGGACGGTCTCCAGTGGATTGTGAGGGAGTTCGCCCGCCGCAG
CCCCGCCTGCCGTGAGACCCTTGGCCGCCTCGGCGCCCTGCCCGAAGAAA
CCGTAACCGCCGCTGCTACGGTGAGCGGCGGTGCTGGCGGTGACAAGGGT
GTGGCCGTTGGG back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9928:3825..5038-
>mRNA_Ecto-sp13_S_contig9928.21574.1 ID=mRNA_Ecto-sp13_S_contig9928.21574.1|Name=mRNA_Ecto-sp13_S_contig9928.21574.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9928:3825..5038- (Ectocarpus species13 EcNAP12_S_4_19m) back to top