prot_Ecto-sp13_S_contig9911.21556.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9911.21556.1
Unique Nameprot_Ecto-sp13_S_contig9911.21556.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length334
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9911.21556.1 vs. uniprot
Match: D7FXY1_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXY1_ECTSI)

HSP 1 Score: 500 bits (1287), Expect = 3.800e-176
Identity = 312/335 (93.13%), Postives = 322/335 (96.12%), Query Frame = 0 
Query:    1 MMPTSSRFSHPDGNLPPPERRRRLDEYGAVEEIYSFSSTSGSSTSAGGRGAAGLLVHPQRSHGDIFQELMSRRAHDMISGAQDVVAGAGMIREETQRQNRALRGENDTLRACVDMLLAEAGXXXXXXXXXXXXXXXSSGVSPFQASPMQLLSAARGVRDRNHQRELALSAAAATAESALRAERTRREGAEVEARLSRKAASS-REARGRRQNQQQ-VVGRGHLGGAFSMALRAIKREKAYFMNAVEDRKRAERALAEERADRRQAETAARTXXXXXXXXXXXXXXXXXCVICSTRRRSRALLPCGHLVMCDRCPVVSTCPICDQQVRRTMPGTLS 333
            MMPTS RFSHPDGNLPPPERRRRLDEYG+VEE+YS+SSTS  STSAGGRGAAGL VH QRSHGDIFQEL+SRRAHDMISGAQDVVAGAGMIREETQRQNRALRGENDTLRACVDMLLAEAGXXXXXXXXXXXXXXXSSGVSPFQ+SPMQLLSAARGVRDRNHQRELALSAAAATAESALRAER RREGAEVEARLSR+AASS R+ARGRRQNQQQ VVGRG+LG  FSMALRA+KREKAYFM+AVEDRKRAERALAEERADRRQAETAARTXXXXXXXXXXXXXXXXX   CSTRRRSRALLPCGHLVMCDRCPVVSTCPICDQQVRRTMPGTLS
Sbjct:    1 MMPTSGRFSHPDGNLPPPERRRRLDEYGSVEELYSYSSTS--STSAGGRGAAGLPVHAQRSHGDIFQELISRRAHDMISGAQDVVAGAGMIREETQRQNRALRGENDTLRACVDMLLAEAGXXXXXXXXXXXXXXXSSGVSPFQSSPMQLLSAARGVRDRNHQRELALSAAAATAESALRAERNRREGAEVEARLSREAASSSRQARGRRQNQQQQVVGRGYLGETFSMALRALKREKAYFMDAVEDRKRAERALAEERADRRQAETAARTXXXXXXXXXXXXXXXXXXXXCSTRRRSRALLPCGHLVMCDRCPVVSTCPICDQQVRRTMPGTLS 333
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BLAST of mRNA_Ecto-sp13_S_contig9911.21556.1 vs. uniprot
Match: A0A6J1D544_MOMCH (RING-type E3 ubiquitin transferase n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1D544_MOMCH)

HSP 1 Score: 55.8 bits (133), Expect = 4.660e-5
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 0 
Query:  287 CVICSTRRRSRALLPCGHLVMCDRCPV------VSTCPICDQQVRRTM 328
            CVIC TRRR  A +PCGHLV C+RC +         CP+C QQ+R ++
Sbjct:  344 CVICLTRRRRSAFIPCGHLVCCERCAISVERESAPKCPVCRQQIRSSV 391
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9911.21556.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXY1_ECTSI3.800e-17693.13RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6J1D544_MOMCH4.660e-550.00RING-type E3 ubiquitin transferase n=1 Tax=Momordi... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 239..273
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 286..326
e-value: 1.6E-8
score: 34.3
NoneNo IPR availablePANTHERPTHR22696RING FINGER PROTEIN 26 RNF26coord: 160..328
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 286..326
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 260..329
e-value: 1.0E-11
score: 46.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 287..321
score: 8.698

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9911contigEcto-sp13_S_contig9911:3631..4632 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9911.21556.1mRNA_Ecto-sp13_S_contig9911.21556.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9911 3631..4635 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9911.21556.1 ID=prot_Ecto-sp13_S_contig9911.21556.1|Name=mRNA_Ecto-sp13_S_contig9911.21556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=334bp
MMPTSSRFSHPDGNLPPPERRRRLDEYGAVEEIYSFSSTSGSSTSAGGRG
AAGLLVHPQRSHGDIFQELMSRRAHDMISGAQDVVAGAGMIREETQRQNR
ALRGENDTLRACVDMLLAEAGGGGSTSGGGGGSSGGSSGVSPFQASPMQL
LSAARGVRDRNHQRELALSAAAATAESALRAERTRREGAEVEARLSRKAA
SSREARGRRQNQQQVVGRGHLGGAFSMALRAIKREKAYFMNAVEDRKRAE
RALAEERADRRQAETAARTALQEERTKREQAESLAKCVICSTRRRSRALL
PCGHLVMCDRCPVVSTCPICDQQVRRTMPGTLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR001841Znf_RING