mRNA_Ecto-sp13_S_contig9911.21556.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9911.21556.1 vs. uniprot
Match: D7FXY1_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXY1_ECTSI) HSP 1 Score: 500 bits (1287), Expect = 3.950e-176 Identity = 312/335 (93.13%), Postives = 322/335 (96.12%), Query Frame = 1 Query: 4 MMPTSSRFSHPDGNLPPPERRRRLDEYGAVEEIYSFSSTSGSSTSAGGRGAAGLLVHPQRSHGDIFQELMSRRAHDMISGAQDVVAGAGMIREETQRQNRALRGENDTLRACVDMLLAEAGXXXXXXXXXXXXXXXSSGVSPFQASPMQLLSAARGVRDRNHQRELALSAAAATAESALRAERTRREGAEVEARLSRKAASS-REARGRRQNQQQ-VVGRGHLGGAFSMALRAIKREKAYFMNAVEDRKRAERALAEERADRRQAETAARTXXXXXXXXXXXXXXXXXCVICSTRRRSRALLPCGHLVMCDRCPVVSTCPICDQQVRRTMPGTLS 1002 MMPTS RFSHPDGNLPPPERRRRLDEYG+VEE+YS+SSTS STSAGGRGAAGL VH QRSHGDIFQEL+SRRAHDMISGAQDVVAGAGMIREETQRQNRALRGENDTLRACVDMLLAEAGXXXXXXXXXXXXXXXSSGVSPFQ+SPMQLLSAARGVRDRNHQRELALSAAAATAESALRAER RREGAEVEARLSR+AASS R+ARGRRQNQQQ VVGRG+LG FSMALRA+KREKAYFM+AVEDRKRAERALAEERADRRQAETAARTXXXXXXXXXXXXXXXXX CSTRRRSRALLPCGHLVMCDRCPVVSTCPICDQQVRRTMPGTLS Sbjct: 1 MMPTSGRFSHPDGNLPPPERRRRLDEYGSVEELYSYSSTS--STSAGGRGAAGLPVHAQRSHGDIFQELISRRAHDMISGAQDVVAGAGMIREETQRQNRALRGENDTLRACVDMLLAEAGXXXXXXXXXXXXXXXSSGVSPFQSSPMQLLSAARGVRDRNHQRELALSAAAATAESALRAERNRREGAEVEARLSREAASSSRQARGRRQNQQQQVVGRGYLGETFSMALRALKREKAYFMDAVEDRKRAERALAEERADRRQAETAARTXXXXXXXXXXXXXXXXXXXXCSTRRRSRALLPCGHLVMCDRCPVVSTCPICDQQVRRTMPGTLS 333
BLAST of mRNA_Ecto-sp13_S_contig9911.21556.1 vs. uniprot
Match: A0A6J1D544_MOMCH (RING-type E3 ubiquitin transferase n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1D544_MOMCH) HSP 1 Score: 55.8 bits (133), Expect = 4.700e-5 Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 Query: 862 CVICSTRRRSRALLPCGHLVMCDRCPV------VSTCPICDQQVRRTM 987 CVIC TRRR A +PCGHLV C+RC + CP+C QQ+R ++ Sbjct: 344 CVICLTRRRRSAFIPCGHLVCCERCAISVERESAPKCPVCRQQIRSSV 391 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9911.21556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9911.21556.1 >prot_Ecto-sp13_S_contig9911.21556.1 ID=prot_Ecto-sp13_S_contig9911.21556.1|Name=mRNA_Ecto-sp13_S_contig9911.21556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=334bp MMPTSSRFSHPDGNLPPPERRRRLDEYGAVEEIYSFSSTSGSSTSAGGRGback to top mRNA from alignment at Ecto-sp13_S_contig9911:3631..4635- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9911.21556.1 ID=mRNA_Ecto-sp13_S_contig9911.21556.1|Name=mRNA_Ecto-sp13_S_contig9911.21556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1005bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9911:3631..4635- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9911:3631..4635- >mRNA_Ecto-sp13_S_contig9911.21556.1 ID=mRNA_Ecto-sp13_S_contig9911.21556.1|Name=mRNA_Ecto-sp13_S_contig9911.21556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1002bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9911:3631..4635- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |