mRNA_Ecto-sp13_S_contig9911.21556.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9911.21556.1
Unique NamemRNA_Ecto-sp13_S_contig9911.21556.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9911.21556.1 vs. uniprot
Match: D7FXY1_ECTSI (RING-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXY1_ECTSI)

HSP 1 Score: 500 bits (1287), Expect = 3.950e-176
Identity = 312/335 (93.13%), Postives = 322/335 (96.12%), Query Frame = 1 
Query:    4 MMPTSSRFSHPDGNLPPPERRRRLDEYGAVEEIYSFSSTSGSSTSAGGRGAAGLLVHPQRSHGDIFQELMSRRAHDMISGAQDVVAGAGMIREETQRQNRALRGENDTLRACVDMLLAEAGXXXXXXXXXXXXXXXSSGVSPFQASPMQLLSAARGVRDRNHQRELALSAAAATAESALRAERTRREGAEVEARLSRKAASS-REARGRRQNQQQ-VVGRGHLGGAFSMALRAIKREKAYFMNAVEDRKRAERALAEERADRRQAETAARTXXXXXXXXXXXXXXXXXCVICSTRRRSRALLPCGHLVMCDRCPVVSTCPICDQQVRRTMPGTLS 1002
            MMPTS RFSHPDGNLPPPERRRRLDEYG+VEE+YS+SSTS  STSAGGRGAAGL VH QRSHGDIFQEL+SRRAHDMISGAQDVVAGAGMIREETQRQNRALRGENDTLRACVDMLLAEAGXXXXXXXXXXXXXXXSSGVSPFQ+SPMQLLSAARGVRDRNHQRELALSAAAATAESALRAER RREGAEVEARLSR+AASS R+ARGRRQNQQQ VVGRG+LG  FSMALRA+KREKAYFM+AVEDRKRAERALAEERADRRQAETAARTXXXXXXXXXXXXXXXXX   CSTRRRSRALLPCGHLVMCDRCPVVSTCPICDQQVRRTMPGTLS
Sbjct:    1 MMPTSGRFSHPDGNLPPPERRRRLDEYGSVEELYSYSSTS--STSAGGRGAAGLPVHAQRSHGDIFQELISRRAHDMISGAQDVVAGAGMIREETQRQNRALRGENDTLRACVDMLLAEAGXXXXXXXXXXXXXXXSSGVSPFQSSPMQLLSAARGVRDRNHQRELALSAAAATAESALRAERNRREGAEVEARLSREAASSSRQARGRRQNQQQQVVGRGYLGETFSMALRALKREKAYFMDAVEDRKRAERALAEERADRRQAETAARTXXXXXXXXXXXXXXXXXXXXCSTRRRSRALLPCGHLVMCDRCPVVSTCPICDQQVRRTMPGTLS 333
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BLAST of mRNA_Ecto-sp13_S_contig9911.21556.1 vs. uniprot
Match: A0A6J1D544_MOMCH (RING-type E3 ubiquitin transferase n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1D544_MOMCH)

HSP 1 Score: 55.8 bits (133), Expect = 4.700e-5
Identity = 24/48 (50.00%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:  862 CVICSTRRRSRALLPCGHLVMCDRCPV------VSTCPICDQQVRRTM 987
            CVIC TRRR  A +PCGHLV C+RC +         CP+C QQ+R ++
Sbjct:  344 CVICLTRRRRSAFIPCGHLVCCERCAISVERESAPKCPVCRQQIRSSV 391
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9911.21556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXY1_ECTSI3.950e-17693.13RING-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6J1D544_MOMCH4.700e-550.00RING-type E3 ubiquitin transferase n=1 Tax=Momordi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9911contigEcto-sp13_S_contig9911:3631..4635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1005
Hectar predicted targeting categoryother localisation
Exons1
Cds size1002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464252.1781902-CDS-Ecto-sp13_S_contig9911:3630..46321681464252.1781902-CDS-Ecto-sp13_S_contig9911:3630..4632Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9911 3631..4632 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464252.188944-UTR-Ecto-sp13_S_contig9911:4632..46351681464252.188944-UTR-Ecto-sp13_S_contig9911:4632..4635Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9911 4633..4635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9911.21556.1prot_Ecto-sp13_S_contig9911.21556.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9911 3631..4632 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9911.21556.1

>prot_Ecto-sp13_S_contig9911.21556.1 ID=prot_Ecto-sp13_S_contig9911.21556.1|Name=mRNA_Ecto-sp13_S_contig9911.21556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=334bp
MMPTSSRFSHPDGNLPPPERRRRLDEYGAVEEIYSFSSTSGSSTSAGGRG
AAGLLVHPQRSHGDIFQELMSRRAHDMISGAQDVVAGAGMIREETQRQNR
ALRGENDTLRACVDMLLAEAGGGGSTSGGGGGSSGGSSGVSPFQASPMQL
LSAARGVRDRNHQRELALSAAAATAESALRAERTRREGAEVEARLSRKAA
SSREARGRRQNQQQVVGRGHLGGAFSMALRAIKREKAYFMNAVEDRKRAE
RALAEERADRRQAETAARTALQEERTKREQAESLAKCVICSTRRRSRALL
PCGHLVMCDRCPVVSTCPICDQQVRRTMPGTLS*
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mRNA from alignment at Ecto-sp13_S_contig9911:3631..4635-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9911.21556.1 ID=mRNA_Ecto-sp13_S_contig9911.21556.1|Name=mRNA_Ecto-sp13_S_contig9911.21556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1005bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9911:3631..4635- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGATGATGCCGACGTCGAGCCGCTTCAGCCACCCCGACGGAAACCTGCC
GCCCCCCGAGCGCAGGCGGAGGCTGGACGAATACGGCGCGGTCGAGGAGA
TCTACTCCTTCAGCAGCACCAGCGGCAGCAGCACCAGCGCGGGCGGCCGC
GGTGCGGCCGGACTCTTGGTCCACCCCCAGAGGTCTCACGGCGACATCTT
TCAGGAGCTCATGAGCAGGCGCGCGCACGACATGATCTCGGGCGCGCAAG
ACGTAGTCGCCGGGGCGGGGATGATCCGCGAGGAGACCCAGCGGCAAAAC
CGGGCCCTGCGGGGAGAGAACGACACCCTGCGTGCCTGTGTGGACATGCT
GCTCGCCGAGGCGGGGGGGGGCGGGTCGACCAGCGGCGGTGGCGGCGGCA
GCAGCGGCGGCAGCAGCGGCGTCTCCCCTTTCCAGGCCTCGCCAATGCAG
CTGCTGAGCGCGGCCCGGGGCGTGCGCGACAGGAACCACCAGCGGGAGCT
GGCCCTGAGCGCCGCCGCGGCGACGGCGGAGAGCGCGCTACGGGCGGAGA
GGACCAGGCGCGAGGGCGCCGAGGTCGAGGCCCGGCTTTCCAGGAAGGCC
GCTTCTTCGAGGGAAGCGAGGGGAAGGCGCCAGAACCAGCAGCAGGTCGT
CGGGCGGGGCCATCTGGGGGGAGCCTTCAGCATGGCGCTGCGCGCGATCA
AGAGGGAGAAGGCCTACTTCATGAACGCCGTCGAGGACCGTAAGCGTGCG
GAGCGCGCCCTCGCGGAGGAGAGGGCCGACCGCCGGCAGGCCGAGACGGC
CGCGAGGACCGCGCTCCAAGAGGAGAGGACCAAGCGGGAGCAGGCCGAGA
GCCTCGCCAAGTGCGTCATCTGCTCGACCCGCCGCCGCAGCCGGGCGCTG
CTGCCTTGCGGGCACCTGGTCATGTGCGACCGATGCCCCGTCGTCTCCAC
GTGCCCTATCTGCGACCAGCAGGTCCGGCGGACGATGCCTGGCACACTTT
CTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9911:3631..4635-

>mRNA_Ecto-sp13_S_contig9911.21556.1 ID=mRNA_Ecto-sp13_S_contig9911.21556.1|Name=mRNA_Ecto-sp13_S_contig9911.21556.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1002bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9911:3631..4635- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCCGACGTCGAGCCGCTTCAGCCACCCCGACGGAAACCTGCCGCC
CCCCGAGCGCAGGCGGAGGCTGGACGAATACGGCGCGGTCGAGGAGATCT
ACTCCTTCAGCAGCACCAGCGGCAGCAGCACCAGCGCGGGCGGCCGCGGT
GCGGCCGGACTCTTGGTCCACCCCCAGAGGTCTCACGGCGACATCTTTCA
GGAGCTCATGAGCAGGCGCGCGCACGACATGATCTCGGGCGCGCAAGACG
TAGTCGCCGGGGCGGGGATGATCCGCGAGGAGACCCAGCGGCAAAACCGG
GCCCTGCGGGGAGAGAACGACACCCTGCGTGCCTGTGTGGACATGCTGCT
CGCCGAGGCGGGGGGGGGCGGGTCGACCAGCGGCGGTGGCGGCGGCAGCA
GCGGCGGCAGCAGCGGCGTCTCCCCTTTCCAGGCCTCGCCAATGCAGCTG
CTGAGCGCGGCCCGGGGCGTGCGCGACAGGAACCACCAGCGGGAGCTGGC
CCTGAGCGCCGCCGCGGCGACGGCGGAGAGCGCGCTACGGGCGGAGAGGA
CCAGGCGCGAGGGCGCCGAGGTCGAGGCCCGGCTTTCCAGGAAGGCCGCT
TCTTCGAGGGAAGCGAGGGGAAGGCGCCAGAACCAGCAGCAGGTCGTCGG
GCGGGGCCATCTGGGGGGAGCCTTCAGCATGGCGCTGCGCGCGATCAAGA
GGGAGAAGGCCTACTTCATGAACGCCGTCGAGGACCGTAAGCGTGCGGAG
CGCGCCCTCGCGGAGGAGAGGGCCGACCGCCGGCAGGCCGAGACGGCCGC
GAGGACCGCGCTCCAAGAGGAGAGGACCAAGCGGGAGCAGGCCGAGAGCC
TCGCCAAGTGCGTCATCTGCTCGACCCGCCGCCGCAGCCGGGCGCTGCTG
CCTTGCGGGCACCTGGTCATGTGCGACCGATGCCCCGTCGTCTCCACGTG
CCCTATCTGCGACCAGCAGGTCCGGCGGACGATGCCTGGCACACTTTCTT
AG
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