prot_Ecto-sp13_S_contig9868.21512.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9868.21512.1
Unique Nameprot_Ecto-sp13_S_contig9868.21512.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length259
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9868.21512.1 vs. uniprot
Match: D7FXV4_ECTSI (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, family GT13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV4_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 9.450e-75
Identity = 138/167 (82.63%), Postives = 150/167 (89.82%), Query Frame = 0 
Query:   90 GGLQGGRYLAGGXXXXXXTKKEFIKRRNDDRNGSREDHAKTKKKFHRFEKVDISSEDSIRNNYIKGGWMGGLGLGIDAYVGNGAWDAELSTDPSDGEDDASRKRPVIINADEDGEGDGLVRWEPGQLSRLAQRQXXXXXXXXXXEGGMARTPMLGPDGVLLVICANR 256
            GG QGGR+ AG XXXXXX     IKR+NDDRNGSRE+HAK KKKFHRFE+ DISSEDSIRNNYI+GGWMGGLGLGIDAYVG+G+W AELSTDP+ GEDD SR+RPVIINADEDG GDG  RWEPGQLSRLAQRQXXXXXXXXXXEGG+ARTPMLGPD V+L+ICANR
Sbjct:   28 GGPQGGRHRAGXXXXXXXXXXXXIKRKNDDRNGSREEHAKAKKKFHRFEQADISSEDSIRNNYIRGGWMGGLGLGIDAYVGDGSWGAELSTDPAGGEDDVSRRRPVIINADEDGTGDGQARWEPGQLSRLAQRQXXXXXXXXXXEGGVARTPMLGPDAVVLIICANR 194
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BLAST of mRNA_Ecto-sp13_S_contig9868.21512.1 vs. uniprot
Match: A0A6H5L776_9PHAE (GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L776_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 5.220e-37
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 0 
Query:  158 MGGLGLGIDAYVGNGAWDAELSTDPSDGEDDASRKRPVIINADEDGEGDGLVRWEPGQLSRLAQRQXXXXXXXXXXEGGMARTPMLGPDGVLLVICANR 256
            MGGLGLGI+AYVG+G+WDAELS D + GEDD  R+RPVIINADE+G GDG VRWEPGQLSRLAQRQXXXXXXXXXXE GMARTPMLGPD VLLVICANR
Sbjct:    1 MGGLGLGIEAYVGDGSWDAELSADRAGGEDDV-RRRPVIINADEEGGGDGQVRWEPGQLSRLAQRQXXXXXXXXXXERGMARTPMLGPDAVLLVICANR 98
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9868.21512.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXV4_ECTSI9.450e-7582.63Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu... [more]
A0A6H5L776_9PHAE5.220e-3784.85GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..16
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..258
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 17..21
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.727

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9868contigEcto-sp13_S_contig9868:2516..6030 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9868.21512.1mRNA_Ecto-sp13_S_contig9868.21512.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9868 2495..6030 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9868.21512.1 ID=prot_Ecto-sp13_S_contig9868.21512.1|Name=mRNA_Ecto-sp13_S_contig9868.21512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=259bp
MLVRVVFGSLGVLAMVTLCTSVANLDGTRESEPTGGPDFKEPAPPAGFQY
DTEADSSRRDAERLQKPPAPPVPPPPPPPPRPPLDGEGEGGLQGGRYLAG
GGGHDGGTKKEFIKRRNDDRNGSREDHAKTKKKFHRFEKVDISSEDSIRN
NYIKGGWMGGLGLGIDAYVGNGAWDAELSTDPSDGEDDASRKRPVIINAD
EDGEGDGLVRWEPGQLSRLAQRQQRQRDEEDEEEGGMARTPMLGPDGVLL
VICANRCM*
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