mRNA_Ecto-sp13_S_contig9868.21512.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig9868.21512.1
Unique Name	mRNA_Ecto-sp13_S_contig9868.21512.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig9868.21512.1 vs. uniprot
Match: D7FXV4_ECTSI (Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, family GT13 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXV4_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 1.220e-74
Identity = 138/167 (82.63%), Postives = 150/167 (89.82%), Query Frame = 1

Query:  289 GGLQGGRYLAGGXXXXXXTKKEFIKRRNDDRNGSREDHAKTKKKFHRFEKVDISSEDSIRNNYIKGGWMGGLGLGIDAYVGNGAWDAELSTDPSDGEDDASRKRPVIINADEDGEGDGLVRWEPGQLSRLAQRQXXXXXXXXXXEGGMARTPMLGPDGVLLVICANR 789
            GG QGGR+ AG XXXXXX     IKR+NDDRNGSRE+HAK KKKFHRFE+ DISSEDSIRNNYI+GGWMGGLGLGIDAYVG+G+W AELSTDP+ GEDD SR+RPVIINADEDG GDG  RWEPGQLSRLAQRQXXXXXXXXXXEGG+ARTPMLGPD V+L+ICANR
Sbjct:   28 GGPQGGRHRAGXXXXXXXXXXXXIKRKNDDRNGSREEHAKAKKKFHRFEQADISSEDSIRNNYIRGGWMGGLGLGIDAYVGDGSWGAELSTDPAGGEDDVSRRRPVIINADEDGTGDGQARWEPGQLSRLAQRQXXXXXXXXXXEGGVARTPMLGPDAVVLIICANR 194

[Close]

BLAST of mRNA_Ecto-sp13_S_contig9868.21512.1 vs. uniprot
Match: A0A6H5L776_9PHAE (GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L776_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 6.450e-37
Identity = 84/99 (84.85%), Postives = 90/99 (90.91%), Query Frame = 1

Query:  493 MGGLGLGIDAYVGNGAWDAELSTDPSDGEDDASRKRPVIINADEDGEGDGLVRWEPGQLSRLAQRQXXXXXXXXXXEGGMARTPMLGPDGVLLVICANR 789
            MGGLGLGI+AYVG+G+WDAELS D + GEDD  R+RPVIINADE+G GDG VRWEPGQLSRLAQRQXXXXXXXXXXE GMARTPMLGPD VLLVICANR
Sbjct:    1 MGGLGLGIEAYVGDGSWDAELSADRAGGEDDV-RRRPVIINADEEGGGDGQVRWEPGQLSRLAQRQXXXXXXXXXXERGMARTPMLGPDAVLLVICANR 98

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig9868.21512.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig9868.21512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2

ZOOM

x 1

POSITION

0


Match Name	E-value	Identity	Description
D7FXV4_ECTSI	1.220e-74	82.63	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglu...	[more]
A0A6H5L776_9PHAE	6.450e-37	84.85	GT13 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	248.4
Seed ortholog evalue	3.6e-63
Seed eggNOG ortholog	2880.D7FXV4
Preferred name	MGAT1
Model size	798
KEGG ko	ko:K00726
KEGG Reaction	R05983
KEGG Pathway	ko00510,ko00513,ko01100,map00510,map00513,map01100
Hectar predicted targeting category	signal peptide
GOs	GO:0000139,GO:0001701,GO:0002252,GO:0002376,GO:0003002,GO:0003674,GO:0003824,GO:0003827,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005795,GO:0005797,GO:0005975,GO:0006040,GO:0006047,GO:0006049,GO:0006139,GO:0006464,GO:0006486,GO:0006487,GO:0006725,GO:0006793,GO:0006807,GO:0007275,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007568,GO:0007610,GO:0007626,GO:0008150,GO:0008152,GO:0008194,GO:0008340,GO:0008344,GO:0008375,GO:0009056,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009225,GO:0009227,GO:0009790,GO:0009792,GO:0009987,GO:0010259,GO:0012505,GO:0016020,GO:0016021,GO:0016319,GO:0016740,GO:0016757,GO:0016758,GO:0018193,GO:0018196,GO:0018279,GO:0019439,GO:0019538,GO:0030534,GO:0031090,GO:0031224,GO:0031984,GO:0031985,GO:0032501,GO:0032502,GO:0034641,GO:0034645,GO:0034655,GO:0034656,GO:0035010,GO:0035282,GO:0035283,GO:0035284,GO:0036211,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044270,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046348,GO:0046483,GO:0046700,GO:0048471,GO:0048513,GO:0048731,GO:0048856,GO:0055086,GO:0060322,GO:0070085,GO:0071704,GO:0098588,GO:0098791,GO:0140096,GO:0140103,GO:1901135,GO:1901136,GO:1901137,GO:1901360,GO:1901361,GO:1901564,GO:1901566,GO:1901575,GO:1901576
Exons	5
EggNOG free text desc.	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity
EggNOG OGs	KOG1413@1,KOG1413@2759
Ec32 ortholog description	Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase, family GT13
Ec32 ortholog	Ec-23_001370.1
EC	2.4.1.101
Cds size	777
COG Functional cat.	S
CAZy	GT13
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko01000,ko01003

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig9868:2495..6030+
coding sequence from alignment at Ecto-sp13_S_contig9868:2495..6030+

protein sequence of mRNA_Ecto-sp13_S_contig9868.21512.1

>prot_Ecto-sp13_S_contig9868.21512.1 ID=prot_Ecto-sp13_S_contig9868.21512.1|Name=mRNA_Ecto-sp13_S_contig9868.21512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=259bp
MLVRVVFGSLGVLAMVTLCTSVANLDGTRESEPTGGPDFKEPAPPAGFQY
DTEADSSRRDAERLQKPPAPPVPPPPPPPPRPPLDGEGEGGLQGGRYLAG
GGGHDGGTKKEFIKRRNDDRNGSREDHAKTKKKFHRFEKVDISSEDSIRN
NYIKGGWMGGLGLGIDAYVGNGAWDAELSTDPSDGEDDASRKRPVIINAD
EDGEGDGLVRWEPGQLSRLAQRQQRQRDEEDEEEGGMARTPMLGPDGVLL
VICANRCM*

mRNA from alignment at Ecto-sp13_S_contig9868:2495..6030+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig9868.21512.1 ID=mRNA_Ecto-sp13_S_contig9868.21512.1|Name=mRNA_Ecto-sp13_S_contig9868.21512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3536bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9868:2495..6030+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGGACGCGGGACATTTTGGATGCTGGTACGAGTGGTGTTTGGCTCACT
GGGGGTGCTTGCCATGGTGACGTTGTGTACAAGCGTAGCCAACCTGGACG
GAACGCGAGAGAGCGAACCTACGGGAGGGCCAGATTTCAAGGTAACATCA
GTGCAGCATCTGTCCGCTACGTTTCGCGCGCTCCGCTGGTGACTGATGGC
CAGGCAGGAGAACTACCCCTTGTTGTTCTTGGTAGTGGTTCTTGTTGCAG
TGATGAGCACGGTTTTGCGACCCGCAATGTCAGAAGGGGACATATGGTCA
TAACTAAGGCAGGTGCGCCAATTGGCGGTGTGGTGGCCATGGTGCAGTGG
TGCCATGCAACATTTCCGTTGTCGCCACGCGGTGCATGTTGCTAAACAGG
GGGCCGGTAAGCCGGGCCAACCGCTTTATGACACACCCCCAATAGGAAAA
TCGGTACGCAGCCGACCCAGTTGCTGCTGCCTGCATCCTTGCTGATCCGA
CCCTTGGAAGAGTCGACTCCGCCCCCTAGCAGTCATTGGGGGGGGCTCAT
CCGGCCTTGGTATGAACCGACTCTCCTCCAGGGTCACTGGGGGGGGTGTT
GAGCACAAGACCAGATAACAATTACTACCGTAAAAGGATATTTTCAGTGT
ATAGGCTTAATTATACTCGAAATAAGCCCAGTACCCGGTTGGTTTCCCTC
CATTCACTGCAAAGACCCCAACACATCCCGTTCGACTGGGGTTATGTCTC
GAATGGATAGTCTTTTCTGTGGTTGTATTTATGTTTCCTGAAACAATGTA
CGCCTTGTATCGGTCTCGTCCCATCTCTAGTTTTTTGTCACACTTGTTGA
TTCCTAGGTTGTCATCTCTTGGTTGCCCTTCATATTCTCCTGTTCTTGAC
CGCCTCTCTCTGTTTTATTTCGTGTATCGTGGCTTCTCAGGAACCAGCGC
CCCCGGCGGGGTTTCAGTACGATACGGAGGCCGACTCTTCGCGACGGGAT
GCAGGTTTGGGTCATCGTCGAAACACTGCTGTACTTCTAAATGTTTTTTT
TTCTTACAGGCACACATCAGACTCATTTTCCTACAGCCAAGCTTGTATTG
TGGAATAGATTAGCGACGAACTCGAAGCGCTGTATGATGACAAAGCTGTT
TTTCTCATGCATCTCCAGCGGCGAACAGACCCACGTTTTTTGGTGCCGTC
ATTTTTCGTTTGTGGCTTTGTTTCTTTTCCCTGCGCGACAGATTTTCTAG
TTGTTGAAAGAGGAAAATCGTTTACTGCAAGGCACAGACGGCGGTGGCAG
CGGGTGCATAAAAACGAAGCTTTAACCCTTTGACCCTTAGTGCGACGCTT
GTTTGTTTGCAGGCACGGGACTGCACACCACCACCACCACCCCCAACCGA
TCCCCCAACTCCTGTTCGTAGGAGCAACATGTAAACCCAGCTCCGCGACG
GTGGTAGCACCGTCGAGATCAACGTCGTAGCACGATGGTCAGAAATACCG
ATGTCGAGATGGCCTCGGTGCAAAAAAGCCTTTGCTTCGTTGGTCAGTAT
CATCGACGGCATCCGGAAACAAATCCGAATGTTACGACCTGCTGTTTGTG
CACATCACGCATTTCTGTGCGTACTTGTACCTCGTTGTATCACCGCCACC
CAGAACGATTGCAGAAGCCACCGGCGCCACCTGTGCCACCACCACCGCCG
CCGCCGCCGCGACCACCGCTTGACGGTGAGGGTGAGGGGGGCCTGCAGGG
TGGGCGGTATCTGGCCGGGGGTGGGGGGCACGACGGGGGTACTAAGAAGG
AGTTCATTAAGAGAAGAAACGACGATCGAAACGGGAGTCGAGAGGATCAC
GCCAAGACGAAGAAGAAATTTCATAGGTGAGCTTGGTACACAGCAATGAG
CAGGCGTAACATTTTTGTTATATGATTTCCGTTCTTTCGATGGCAAGTGA
GACCACTTCACTGCTATAAAAGACAGCTTGATTGTCGTGTGCATGAATTG
CACCAGCCATTTTGTTAGAGATCCGCACGTTCACCTTGAATGAAATCGAA
GCGTTCGTGTGTTTTGGTTCCATCTATTCGGGCGCCTGTCTACGCACCAT
TTGGTGTACTGCAGGTGACATGATGGTAGATACCACACCCTCAGGACCGA
TTTCAAGCCTCGATTTATCCTCAACAGAATGAGTTGCCGCGCAGGAAACG
GGGGCGTTGAAGCCGCCTCGTCAAGGGGTTTCCGGTTCATTTATGCACCC
TCTTCGTCATGGAGTAATCGAGCTTTGAAAACGGGCCCTGGGGGTGTGGT
ATCTTGTACCACCCATGGCATTCGTGTGTGTGTTTGACGTGCCAGCCGGG
GGGAAGAAGGTCGCCCAGGAGCGCTTGCCGGTGTTTTGGATTTTTGTTTG
AGTACCCCGCCTTTCCTACCTCCAGAGTATGCCGCTGGCGCCGCGAAAGG
CTCACCGAGTACGACTTGTTTTTCGTTGATCCGCGGGTTGGCTTGGTCGA
TGCTAATGAACACACCCGCACACATGCACACAGGGTTGAGAAAGGAGGTA
TTTTCGTCTCAGCTGTTGAACGCGCCCGCACACGTACGAACAGGTTTGAG
AAGGTAGACATTTCGTCTGAGGACAGCATCCGCAATAATTACATCAAAGG
CGGCTGGATGGGTGGGCTTGGACTCGGCATCGATGCGTATGTCGGGAATG
GGGCGTGGGATGCGGAGGTGAGCGGCCGTTGCGGTGTGGCCTGTCAAGAG
GAGCAGGACGATGTTTAGGTAGTTCGCGTATCTGTAAAGAAAATTACGAA
GGAGGAGCGAACAACTAGTTAGTTCAGCTACACCTAAGGGACAGAATGAA
GCGGTAGTGCGGGTACCTCAAAAGTACAAGAATAGGTGGTGTGTGCGACT
AGTTCCTGTCGACAACGGGTTTGTAGTTGTAGAACAGGGGTCATGGAAGG
CTGCGCGGGGTTATTCGAGTGCTGTTGACGTTGCTCTCCAAGAGTGCTGT
GTGGGTCGATCGCGCACAGGAGATTTACGACGAGGCAGCCGGTGGATGGT
ACGATGATCATCAAGAAGTCCCGCCTACCGGTGTACTTACGTGCTCGCTT
TTTGCAAACCACTACTGCTGTGTCTCAGTATCAAGCATGCATTACGAACA
CCTATTCGTCGTTAACAAATGGTCCTCCTCATCATCAACTTATCCCCCTG
TCTAAACCGAAAAGACCGTTCCTCATGTCATCAACCGTTCCGCATTGTCA
ATAACTACAACCTGTGTCCTTATTCCAAACAACAACACAGCTCTCCACCG
ACCCCTCTGACGGCGAGGACGACGCGAGTAGAAAAAGACCGGTGATCATC
AACGCCGATGAGGACGGGGAGGGGGACGGGCTGGTGAGATGGGAGCCAGG
CCAGCTGTCGAGGCTGGCGCAGCGGCAGCAGCGGCAGAGGGATGAGGAGG
ACGAGGAGGAGGGGGGGATGGCGAGGACGCCGATGCTTGGGCCCGACGGT
GTGCTTCTGGTCATCTGCGCCAACAGGTGCATGTAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9868:2495..6030+

>mRNA_Ecto-sp13_S_contig9868.21512.1 ID=mRNA_Ecto-sp13_S_contig9868.21512.1|Name=mRNA_Ecto-sp13_S_contig9868.21512.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9868:2495..6030+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGTACGAGTGGTGTTTGGCTCACTGGGGGTGCTTGCCATGGTGAC
GTTGTGTACAAGCGTAGCCAACCTGGACGGAACGCGAGAGAGCGAACCTA
CGGGAGGGCCAGATTTCAAGGAACCAGCGCCCCCGGCGGGGTTTCAGTAC
GATACGGAGGCCGACTCTTCGCGACGGGATGCAGAACGATTGCAGAAGCC
ACCGGCGCCACCTGTGCCACCACCACCGCCGCCGCCGCCGCGACCACCGC
TTGACGGTGAGGGTGAGGGGGGCCTGCAGGGTGGGCGGTATCTGGCCGGG
GGTGGGGGGCACGACGGGGGTACTAAGAAGGAGTTCATTAAGAGAAGAAA
CGACGATCGAAACGGGAGTCGAGAGGATCACGCCAAGACGAAGAAGAAAT
TTCATAGGTTTGAGAAGGTAGACATTTCGTCTGAGGACAGCATCCGCAAT
AATTACATCAAAGGCGGCTGGATGGGTGGGCTTGGACTCGGCATCGATGC
GTATGTCGGGAATGGGGCGTGGGATGCGGAGCTCTCCACCGACCCCTCTG
ACGGCGAGGACGACGCGAGTAGAAAAAGACCGGTGATCATCAACGCCGAT
GAGGACGGGGAGGGGGACGGGCTGGTGAGATGGGAGCCAGGCCAGCTGTC
GAGGCTGGCGCAGCGGCAGCAGCGGCAGAGGGATGAGGAGGACGAGGAGG
AGGGGGGGATGGCGAGGACGCCGATGCTTGGGCCCGACGGTGTGCTTCTG
GTCATCTGCGCCAACAGGTGCATGTAG