prot_Ecto-sp13_S_contig98630.21507.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig98630.21507.1
Unique Nameprot_Ecto-sp13_S_contig98630.21507.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length48
Homology
BLAST of mRNA_Ecto-sp13_S_contig98630.21507.1 vs. uniprot
Match: D7FHF8_ECTSI (Ribonuclease HI n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF8_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.620e-20
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 0
Query:    3 VTSPKMQPLFREATILSKAFDALELGHIMRAHNERADDLANIAMDT 48
            VTSPKMQPLFREAT +SKAFDALELGHIMRAHNERADDLANIAMDT
Sbjct:  290 VTSPKMQPLFREATTISKAFDALELGHIMRAHNERADDLANIAMDT 335          
BLAST of mRNA_Ecto-sp13_S_contig98630.21507.1 vs. uniprot
Match: A0A7C3W241_9BACT (Ribonuclease HI family protein n=1 Tax=candidate division NC10 bacterium TaxID=2072417 RepID=A0A7C3W241_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 1.220e-5
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 0
Query:    2 QVTSPKMQPLFREATILSKAFDALELGHIMRAHNERADDLANIAMDT 48
            +V + K+ PLFREA  LS+ F   ++ HI R  N RAD LAN+A+DT
Sbjct:   83 RVKNSKLIPLFREAMALSQGFFRFQIQHIPRDENWRADQLANLALDT 129          
BLAST of mRNA_Ecto-sp13_S_contig98630.21507.1 vs. uniprot
Match: A0A841K4Q8_9BACT (Putative phosphoglycerate mutase n=1 Tax=Silvibacterium bohemicum TaxID=1577686 RepID=A0A841K4Q8_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 3.650e-5
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 0
Query:    2 QVTSPKMQPLFREATILSKAFDALELGHIMRAHNERADDLANIAMD 47
            +V SP+++PL+ EA       DA ++ H++R  N+RAD LAN+AMD
Sbjct:  107 KVNSPELRPLYEEAKRRIARLDAFQIQHVLREKNQRADRLANLAMD 152          
BLAST of mRNA_Ecto-sp13_S_contig98630.21507.1 vs. uniprot
Match: A0A6T8JIG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8JIG0_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 4.120e-5
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 0
Query:    2 QVTSPKMQPLFREATILSKAFDALELGHIMRAHNERADDLANIAMDT 48
            +V S  ++P  R+A  L  AF   E+ HI R  N RAD+LANIAMD+
Sbjct:  120 KVKSQHLKPFHRDAVELRSAFSTFEISHIPREENGRADELANIAMDS 166          
BLAST of mRNA_Ecto-sp13_S_contig98630.21507.1 vs. uniprot
Match: UPI00131E0E7E (ribonuclease HI family protein n=1 Tax=Acidobacterium sp. S8 TaxID=1641854 RepID=UPI00131E0E7E)

HSP 1 Score: 47.0 bits (110), Expect = 8.020e-5
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 0
Query:    2 QVTSPKMQPLFREATILSKAFDALELGHIMRAHNERADDLANIAMD 47
            +V SP+++PL+ EA   +   +A ++ H++R  N+RAD LAN AMD
Sbjct:  102 RVNSPELRPLYDEAKSRASKLEAFQIQHVLRCKNQRADQLANQAMD 147          
BLAST of mRNA_Ecto-sp13_S_contig98630.21507.1 vs. uniprot
Match: A0A537K9I8_9BACT (Ribonuclease HI family protein n=1 Tax=Terrabacteria group bacterium ANGP1 TaxID=2569760 RepID=A0A537K9I8_9BACT)

HSP 1 Score: 46.2 bits (108), Expect = 8.860e-5
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 0
Query:    2 QVTSPKMQPLFREATILSKAFDALELGHIMRAHNERADDLANIAMD 47
            QV SP + PL REA    + FD + + H+ R  NERAD LAN A+D
Sbjct:   90 QVKSPALAPLHREALARLREFDRVSVVHVPRTDNERADALANRALD 135          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98630.21507.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FHF8_ECTSI1.620e-2095.65Ribonuclease HI n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A7C3W241_9BACT1.220e-551.06Ribonuclease HI family protein n=1 Tax=candidate d... [more]
A0A841K4Q8_9BACT3.650e-545.65Putative phosphoglycerate mutase n=1 Tax=Silvibact... [more]
A0A6T8JIG0_9STRA4.120e-548.94Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
UPI00131E0E7E8.020e-543.48ribonuclease HI family protein n=1 Tax=Acidobacter... [more]
A0A537K9I8_9BACT8.860e-550.00Ribonuclease HI family protein n=1 Tax=Terrabacter... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 3..44
e-value: 3.3E-5
score: 23.7
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..48
e-value: 5.9E-8
score: 34.8

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig98630contigEcto-sp13_S_contig98630:339..482 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig98630.21507.1mRNA_Ecto-sp13_S_contig98630.21507.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig98630 336..482 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig98630.21507.1 ID=prot_Ecto-sp13_S_contig98630.21507.1|Name=mRNA_Ecto-sp13_S_contig98630.21507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MQVTSPKMQPLFREATILSKAFDALELGHIMRAHNERADDLANIAMDT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002156RNaseH_domain
IPR036397RNaseH_sf