mRNA_Ecto-sp13_S_contig98630.21507.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig98630.21507.1
Unique NamemRNA_Ecto-sp13_S_contig98630.21507.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig98630.21507.1 vs. uniprot
Match: D7FHF8_ECTSI (Ribonuclease HI n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHF8_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.690e-20
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:   10 VTSPKMQPLFREATILSKAFDALELGHIMRAHNERADDLANIAMDT 147
            VTSPKMQPLFREAT +SKAFDALELGHIMRAHNERADDLANIAMDT
Sbjct:  290 VTSPKMQPLFREATTISKAFDALELGHIMRAHNERADDLANIAMDT 335
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BLAST of mRNA_Ecto-sp13_S_contig98630.21507.1 vs. uniprot
Match: A0A7C3W241_9BACT (Ribonuclease HI family protein n=1 Tax=candidate division NC10 bacterium TaxID=2072417 RepID=A0A7C3W241_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 1.280e-5
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:    7 QVTSPKMQPLFREATILSKAFDALELGHIMRAHNERADDLANIAMDT 147
            +V + K+ PLFREA  LS+ F   ++ HI R  N RAD LAN+A+DT
Sbjct:   83 RVKNSKLIPLFREAMALSQGFFRFQIQHIPRDENWRADQLANLALDT 129
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BLAST of mRNA_Ecto-sp13_S_contig98630.21507.1 vs. uniprot
Match: A0A841K4Q8_9BACT (Putative phosphoglycerate mutase n=1 Tax=Silvibacterium bohemicum TaxID=1577686 RepID=A0A841K4Q8_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 3.810e-5
Identity = 21/46 (45.65%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    7 QVTSPKMQPLFREATILSKAFDALELGHIMRAHNERADDLANIAMD 144
            +V SP+++PL+ EA       DA ++ H++R  N+RAD LAN+AMD
Sbjct:  107 KVNSPELRPLYEEAKRRIARLDAFQIQHVLREKNQRADRLANLAMD 152
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BLAST of mRNA_Ecto-sp13_S_contig98630.21507.1 vs. uniprot
Match: A0A6T8JIG0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8JIG0_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 4.300e-5
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 1 
Query:    7 QVTSPKMQPLFREATILSKAFDALELGHIMRAHNERADDLANIAMDT 147
            +V S  ++P  R+A  L  AF   E+ HI R  N RAD+LANIAMD+
Sbjct:  120 KVKSQHLKPFHRDAVELRSAFSTFEISHIPREENGRADELANIAMDS 166
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BLAST of mRNA_Ecto-sp13_S_contig98630.21507.1 vs. uniprot
Match: UPI00131E0E7E (ribonuclease HI family protein n=1 Tax=Acidobacterium sp. S8 TaxID=1641854 RepID=UPI00131E0E7E)

HSP 1 Score: 47.0 bits (110), Expect = 8.370e-5
Identity = 20/46 (43.48%), Postives = 32/46 (69.57%), Query Frame = 1 
Query:    7 QVTSPKMQPLFREATILSKAFDALELGHIMRAHNERADDLANIAMD 144
            +V SP+++PL+ EA   +   +A ++ H++R  N+RAD LAN AMD
Sbjct:  102 RVNSPELRPLYDEAKSRASKLEAFQIQHVLRCKNQRADQLANQAMD 147
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BLAST of mRNA_Ecto-sp13_S_contig98630.21507.1 vs. uniprot
Match: A0A537K9I8_9BACT (Ribonuclease HI family protein n=1 Tax=Terrabacteria group bacterium ANGP1 TaxID=2569760 RepID=A0A537K9I8_9BACT)

HSP 1 Score: 46.2 bits (108), Expect = 9.240e-5
Identity = 23/46 (50.00%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:    7 QVTSPKMQPLFREATILSKAFDALELGHIMRAHNERADDLANIAMD 144
            QV SP + PL REA    + FD + + H+ R  NERAD LAN A+D
Sbjct:   90 QVKSPALAPLHREALARLREFDRVSVVHVPRTDNERADALANRALD 135
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig98630.21507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FHF8_ECTSI1.690e-2095.65Ribonuclease HI n=2 Tax=Ectocarpus TaxID=2879 RepI... [more]
A0A7C3W241_9BACT1.280e-551.06Ribonuclease HI family protein n=1 Tax=candidate d... [more]
A0A841K4Q8_9BACT3.810e-545.65Putative phosphoglycerate mutase n=1 Tax=Silvibact... [more]
A0A6T8JIG0_9STRA4.300e-548.94Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
UPI00131E0E7E8.370e-543.48ribonuclease HI family protein n=1 Tax=Acidobacter... [more]
A0A537K9I8_9BACT9.240e-550.00Ribonuclease HI family protein n=1 Tax=Terrabacter... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig98630contigEcto-sp13_S_contig98630:336..482 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score90.9
Seed ortholog evalue1.8e-16
Seed eggNOG ortholog2880.D7FHF8
Model size147
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.RNase H
EggNOG OGs2S89Z@2759,COG0328@1
Ec32 ortholog descriptionRibonuclease H-like domain
Ec32 orthologEc-25_002560.1
Cds size144
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464248.288894-UTR-Ecto-sp13_S_contig98630:335..3381681464248.288894-UTR-Ecto-sp13_S_contig98630:335..338Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig98630 336..338 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464248.3004684-CDS-Ecto-sp13_S_contig98630:338..4821681464248.3004684-CDS-Ecto-sp13_S_contig98630:338..482Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig98630 339..482 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig98630.21507.1prot_Ecto-sp13_S_contig98630.21507.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig98630 339..482 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig98630.21507.1

>prot_Ecto-sp13_S_contig98630.21507.1 ID=prot_Ecto-sp13_S_contig98630.21507.1|Name=mRNA_Ecto-sp13_S_contig98630.21507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=48bp
MQVTSPKMQPLFREATILSKAFDALELGHIMRAHNERADDLANIAMDT
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mRNA from alignment at Ecto-sp13_S_contig98630:336..482+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig98630.21507.1 ID=mRNA_Ecto-sp13_S_contig98630.21507.1|Name=mRNA_Ecto-sp13_S_contig98630.21507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98630:336..482+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCATGCAGGTTACGAGCCCAAAGATGCAACCTCTGTTTAGAGAAGCCAC
GATTTTATCGAAAGCCTTCGACGCGCTGGAACTGGGGCACATAATGCGAG
CGCATAACGAGCGGGCCGACGACCTAGCGAACATCGCTATGGATACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig98630:336..482+

>mRNA_Ecto-sp13_S_contig98630.21507.1 ID=mRNA_Ecto-sp13_S_contig98630.21507.1|Name=mRNA_Ecto-sp13_S_contig98630.21507.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=144bp|location=Sequence derived from alignment at Ecto-sp13_S_contig98630:336..482+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGTTACGAGCCCAAAGATGCAACCTCTGTTTAGAGAAGCCACGAT
TTTATCGAAAGCCTTCGACGCGCTGGAACTGGGGCACATAATGCGAGCGC
ATAACGAGCGGGCCGACGACCTAGCGAACATCGCTATGGATACC
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