mRNA_Ecto-sp13_S_contig9826.21473.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9826.21473.1
Unique NamemRNA_Ecto-sp13_S_contig9826.21473.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9826.21473.1 vs. uniprot
Match: A0A6H5KLJ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLJ1_9PHAE)

HSP 1 Score: 546 bits (1406), Expect = 3.970e-192
Identity = 290/311 (93.25%), Postives = 294/311 (94.53%), Query Frame = 1
Query:    1 MPRRLLAAVCAGAAALFLLHCGHCFTFVTTTSPVLSPRSTAYPRSRFAPSSSRGGITMSGSSNGRESYSWDEDVLDRAVKDMLVDRAVETVRHLWNETGGDIYGQWLDRFTARQNLGDDVISTMGWARFLIKMMREEPVEAVVIRTAKKDSPQVIEAQRKARLWILFSSPPCQPPWRHSVNQLSADWDAEEEEEMKVALDYPPQLKAVKRSVVVQPAELAKKLMDIREQLALEWREDLKNIEVENNEIVRLDNDRRRRAREAGPGYDEVEQGGXXXSRRRLTYDHGQAFGGDSSPLRSDNYETLVGYLTEI 933
            MPRRLLAAV AG AALFLL CG  FTFVTTTSPVLSPRST YP SRFAP S+RGGI+MSGSSNGRESYSWDEDVLDRAVKDMLVDRAVETVRHLWNETGGDIYGQWLDRFTARQNLGDDVISTMGWARFLIKMMREEPVEAVVIRTAKKDSPQVIEAQRKAR     + PP   PWRHSVNQLSADWDAEEEEEMKVALDYPPQLKAVKRSVVVQPAELAKKLMDIREQLALEWREDLKNIEVEN+EIVRLDNDRRRRAREAGPGYDEVEQGGXXXSRRRLTYDHGQAFGGDSSPLRSDNYETLVGYLTEI
Sbjct:    1 MPRRLLAAVFAGVAALFLLQCGDGFTFVTTTSPVLSPRSTVYPPSRFAPLSTRGGISMSGSSNGRESYSWDEDVLDRAVKDMLVDRAVETVRHLWNETGGDIYGQWLDRFTARQNLGDDVISTMGWARFLIKMMREEPVEAVVIRTAKKDSPQVIEAQRKARN---NARPPTLSPWRHSVNQLSADWDAEEEEEMKVALDYPPQLKAVKRSVVVQPAELAKKLMDIREQLALEWREDLKNIEVENDEIVRLDNDRRRRAREAGPGYDEVEQGGXXXSRRRLTYDHGQAFGGDSSPLRSDNYETLVGYLTEI 308          
BLAST of mRNA_Ecto-sp13_S_contig9826.21473.1 vs. uniprot
Match: A0A2V3J0R6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0R6_9FLOR)

HSP 1 Score: 55.5 bits (132), Expect = 4.370e-5
Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 1
Query:  640 VQPAELAKKLMDIREQLALEWREDLKNIEVENNEIVRLDNDRRRRAREAGPGYDEVEQGGXXXSRRRLTYDHGQAFGGDSSPLRSDNYETLVGYLT 927
            V+P  LAK+++DIR+QLA EW  DL+ IE+EN EI R+       A E     DE +      S+R+L +D    F  D +PLR  NY  L   +T
Sbjct:  136 VEPFRLAKRILDIRKQLAAEWVGDLRCIEMENLEIQRM-------AIERALCSDEAQ----LESKRKLIFDS-DPFASDQTPLRYKNYHALKTLIT 219          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9826.21473.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLJ1_9PHAE3.970e-19293.25Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A2V3J0R6_9FLOR4.370e-540.63Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9826contigEcto-sp13_S_contig9826:265..5884 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score74.3
Seed ortholog evalue1.1e-10
Seed eggNOG ortholog2880.D8LEG6
Model size933
Hectar predicted targeting categorychloroplast
Exons7
EggNOG OGs2E04B@1,2S7JZ@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_002530.1
Cds size933
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9826.21473.1prot_Ecto-sp13_S_contig9826.21473.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9826 265..5884 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464245.8597097-CDS-Ecto-sp13_S_contig9826:264..4491681464245.8597097-CDS-Ecto-sp13_S_contig9826:264..449Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9826 265..449 +
1681464245.883544-CDS-Ecto-sp13_S_contig9826:1510..16231681464245.883544-CDS-Ecto-sp13_S_contig9826:1510..1623Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9826 1511..1623 +
1681464245.8982406-CDS-Ecto-sp13_S_contig9826:2573..26731681464245.8982406-CDS-Ecto-sp13_S_contig9826:2573..2673Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9826 2574..2673 +
1681464245.9079447-CDS-Ecto-sp13_S_contig9826:3207..33301681464245.9079447-CDS-Ecto-sp13_S_contig9826:3207..3330Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9826 3208..3330 +
1681464245.9174201-CDS-Ecto-sp13_S_contig9826:4121..41761681464245.9174201-CDS-Ecto-sp13_S_contig9826:4121..4176Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9826 4122..4176 +
1681464245.9292307-CDS-Ecto-sp13_S_contig9826:4754..49041681464245.9292307-CDS-Ecto-sp13_S_contig9826:4754..4904Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9826 4755..4904 +
1681464245.9400012-CDS-Ecto-sp13_S_contig9826:5677..58841681464245.9400012-CDS-Ecto-sp13_S_contig9826:5677..5884Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9826 5678..5884 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9826.21473.1

>prot_Ecto-sp13_S_contig9826.21473.1 ID=prot_Ecto-sp13_S_contig9826.21473.1|Name=mRNA_Ecto-sp13_S_contig9826.21473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=311bp
MPRRLLAAVCAGAAALFLLHCGHCFTFVTTTSPVLSPRSTAYPRSRFAPS
SSRGGITMSGSSNGRESYSWDEDVLDRAVKDMLVDRAVETVRHLWNETGG
DIYGQWLDRFTARQNLGDDVISTMGWARFLIKMMREEPVEAVVIRTAKKD
SPQVIEAQRKARLWILFSSPPCQPPWRHSVNQLSADWDAEEEEEMKVALD
YPPQLKAVKRSVVVQPAELAKKLMDIREQLALEWREDLKNIEVENNEIVR
LDNDRRRRAREAGPGYDEVEQGGGGGSRRRLTYDHGQAFGGDSSPLRSDN
YETLVGYLTEI
back to top

mRNA from alignment at Ecto-sp13_S_contig9826:265..5884+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9826.21473.1 ID=mRNA_Ecto-sp13_S_contig9826.21473.1|Name=mRNA_Ecto-sp13_S_contig9826.21473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5620bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9826:265..5884+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCGCCGTCTTCTGGCCGCTGTTTGCGCCGGCGCTGCTGCTCTGTT TCTTCTGCATTGCGGCCATTGCTTTACCTTCGTCACTACAACTTCGCCCG TGCTCTCGCCCCGGTCAACGGCGTACCCTCGGAGCAGATTTGCACCGTCT AGTAGTAGAGGCGGCATCACGATGTCTGGATCAAGGTGAGGGAGAGGACA GTAATCGTAGCAGTTAGTGCTTGAAGGTGCGAGAGATCTGTGCGTCTTGG TAAGCATCTTGGTGACGTTGGGGCTTTATTTTGAATTCCGTTTATCCCGC CGCATCTCCGCAACCAGCTGTGCAGATCCCAACCTCGAGCCCAACCATCC ACCACCAGCTTCGTGCTCCACGGAGAAGGCCGCTCGTCAACCCTCGCCAG CTACTTCCACACTCTCCCAATGAGTTGGGCTTCGAGTGTAGAAATTATGG TGATTGTCGTGCTGCCATATTTTCAATACTTATTCTCTCCAAGTCTCTCG GAAAAAATGATACGATCGGGATTCGAAGTCTTTCAGCAGATACTTCTTGT AACATACCGTACTAATTAGTAGGACACAGCAGCACTTCTCCGTTCACCTG GACAACAGTTGACGCACAGCCGCCGGCTGCTGACGTGCCGGTTTTTCACG CGTGTCCACTCGCCTCCGGCACCATAAGGTGTGCCTACATCCAGCCGTAC GTCGGCATCCAGCCGTACGTCGGCAGGATGCTCAGAAACACGCCCAAACG AATCTCAAATCAGTTCGTCGTTGGTCTCTCGAACCTGTCTAAACCTTGAT CGCGAGAGAGAGACAGTCAGCTGTCTGTATTGTACACCTCTCACCCTCTA CGAGTGTAGACTACCTCGGGCGGTTTCTTCGCATTCCATCTTCAGCACCG TTCAAGAGGGAGGGCCCACAACAGCAGTAGCCCCTACCCGTAAGCGGGCG CTTGTATATCGTCATTAATGTGGTTGCACACGTCTGCTACGCGGATCTGC TGGCTGTGGAAGTGAGAAGCACTTCTGGCCGAACACCGCGCGGGAGACAA CAACAAAAAAACGTTCCGCCGATGTGCGCATAACGCGGCCCATAGCTAGG GATGTAAGTTGAATCGATGGTTTTCGTTTCCCGCGCTAGCTCACTACCTC TTCTTGTCAAAGCATTCGATATCCAGTTCCGTTCCACTGTGCTCGCGACC ACCAACCATGTGCTGGTTTTCGTTTTTCGCCATCGGGTTATGGCAGCAAC GGCCGCGAGAGCTATAGCTGGGACGAAGACGTGCTCGATAGAGCGGTGAA GGACATGCTTGTCGACAGGGCGGTGGAGACGGTGCGACACCTGTGGAATG AGACCGGCGGTGAGAGCCTGCTTATTATTATTTTTTTAATATGACACAAC GAATCCATCTCTATCTAAGAAGAGAGTCCAAGACAGATTAGCATTGAATC CATAGCGTCAGTGAAGGCTACCTGTGTTTCCACGATTTCCCGAGCAGCAT ACAGCGGCATCTCCCCCGTGGGTAACAGGGTCAACAACAAAGTGTGGTAG CTGTTTTGTGCATCCATCTACATGTTATGCTCTTTTTGTTTCATCGATTT GTCACGTACGTATGCAGCGATTTCACGAGGCGAGAGGAACGAACGAGCTC TCTGCTTGTGGAGAGACTGGAGTACCGCCTGCGTATATACAACTCGTCGA GGGTATACCGATTCTGGCCCGTGAACGTTGAGATCAGCGTATTATGCGGT ATCTCAGAGCGTACCTTGTTGTCATCGTAGCTTCTGTTGTTTCCGTTACC AGCGCATGACGGAACACTCTGGCATTGGCGAAGTATTACCCGACGTTCTT CCTGACTCTCTCCCTCTCTCTCTCTCCCTCTCTCTCTCTGTCTCTCTCTC TGTCTCTGTCTCTGTCTCACTTACACACGCTTAGTTATGCAGCCGGCCGG CGCGGCCAATGCTTTGTGACAAGGATTTTGCTTTGCTCACCCGTATGTCT TGGAACTTTCATTAGTACGGCTCGCCTCGTTGGCATGGGTGTTCTGTGTG TAGAGAACACACGCTCATCACTTCACACCAGCTCTCCGCCTACCCTCCTC CATCAATCAATCCCCCCTTTTTTCATGTATGTATGCATGCATGCAGGAGA CACCCACCCACCCCCCGCTGTCTTTCCTTTTTTATCGGTCCCCCTCGTTT TGTTCTCATGTATGTATGCCTGTGGGGGACATCCATCCACCCCCCTCTCT GCTTCCCTACCTGTCGGTCTCCCTCCTTTTGTTGTTCATGGATGCTTGCA TGCGTGCAGGGGATATCTACGGTCAGTGGTTGGACCGTTTCACCGCCAGG CAGAACCTAGGCGATGACGTCATTTCGACCATGGGCTGGGCGCGCTTCCT CATCAAGATGTAAGAGCTGTCGCCGACCATGGGGCGCGGGAGGGGCGGCG GGAGAAGGGGCACACAAATGACAGACAAAAGCAAGCAACATCCACGTTTT TTTTTGTGTGGCAAATTGCGTTTTGTTACCTTTCATGTCATCTACATCCC ACTCCTGCCTGTTTCTCTGTTGAAACTGTCGGTATTTCATTTTGTTTTCT GTTCTGTTTCGTGTAGTACGAACCAGCTGCCGAAGTTCCTTGGGACGGAG ATTTTTTGTGTACTTTTACGGCGTTACAAGTCTAATGCTACACAGCGGAA GGCACCAGTGGCCGTTCCTCCTGTATTTCATACCTTACACTGGTACGTAA AGTCTTCCTGCTTCTTGCGCGTTCGGCAATCGTCAGTAAAAGTTACACCG TCCCTACTCCACGGGGTCGCGTAAAGTGATAGACCCCTTGCCTACATCCT GTCTGCCGGCCCCCCTGCCTTTCGCGCGCCCCGTACGTGCGCTATTGTTG TTACTGTTGTTGTCGCCCTTTTTCGTTGCATTTCGGGGCTTAGGATGAGA GAGGAACCGGTGGAAGCGGTTGTGATCAGGACGGCGAAGAAGGACAGCCC CCAAGTTATCGAGGCGCAACGCAAGGCACGACTCTGGATACTTTTTTCCT CGCCGCCATGCCAACCGTAATGTCTTGCCCTTGGTGCCTTTACCCTCTAC CCTCTTCCTCTCTATCCGTCTTGTACACATGCGCCAAAGTACTTAGATTC CCGGTCACGCAAGAGGAACGTACCGCCCACCCTCTCCCCTGCCCCCGAAT AGTACTACCATCCGCGCTGCATTGTTGACTTTTGATAATTCAGAGCCAAA GAAGTGAGTCCACTCCGTCTTTTAGCTCTTGTGCGAGAGTCACCTCCGAG TGAGCACAATCGACATTCGCATACCATGTCTTCCGGGATTATTTTTTGGT GGCGAGGAAGGGGATAGGTTTCACAGCAGCACATTGTTGTCTGAGATTTT TTTCTCTTGGCCGATGGTACCAACGGTTGAGTTGTGACGGGTGCCGTTTA GATCAATGCTGGCTGTTTGTTTCGTTCTGGAGGCCTGTTGGGTCAAAGGC CACACGTCGGTGACGGGCCGACAGGAACCAACCCTTTCCTCTGACGCGAA TCGCCAGACTGACACACACCGGTTGAGCGCTATATCGCCGTGTCTGACGC GTCTGCGAAGCCCGACATGCCCCCCCGATGTGCTCTGAACGATTCCCAGG ATCTAGTGTTCAAAGGATCTAGTGTTCAAATTTCCTGCGAGTCACGGATG ATACCTTCCGAGCACACATCCCTTGCCACACACAGGCATATACCTCCCCC CCCCCCCCCCCTCTACTGCGTGTACGCATGACAATACCTTGTGGCAACCC CCCCCTTGTCCCTGCCCCATTCTCCCCCCAGAATAACGCCCGTCCACCGA CGCTGAGTCCGTGGCGACATTCCGTAAATCAGCTGTCTGCGGACTGGGAC GCCGAGGAAGAGGTGGGGGTTTGAGTCGCGCCAACGCCAGGCCGTGGTTG ACGTACAAAGAGCGCCGATCACCCGCAAGAGCTTTGTTCTTCTACAGTTT GACGGGGAACAATTTAAGCTTGGAAAATAGCTCAGACATCGAGCAGTAGC TCACGTTTTTCGTGGTGTAATCATGATCAAGAGTCCATTTTTGTGTACGT GGTCGCTGTTTGACCGATCGATGCGACATCTGATGCGAGGCAGGGCACCT TGCCCCCTCCTAGTCAGAGGAAGAATGTATCCTGCGGGACCCCCTTGACC TCGAAGCTTCCACCTGCTACAAGAGTGTGGCCAAACAGAATGGACTCGGC TCCAGGCCTGCTTGTGTCTTTGGCCACTTGACTACCAAAGAACTTGGGGG AACCGTGTGCGGATGGACAATGAACACTCTCCATATCCGACTCTGCTCCG TCCCGATACTTTTCGGAACAGACTGTTCGAGAAATTGGTCCAATGCATGA TACTGAAGCCCCCTTCCCAATCTCCCAGGCACGATGCAGGTAGGATGACC CCCCCCCCCCCCCCTCACACAATCACTGCTACGATGGTAGGAGGAGATGA AGGTGGCCCTGGACTATCCCCCTCAGCTGAAGGCCGTTAAGAGGAGCGTG GTCGTGCAGCCGGCGGAGCTAGCGAAAAAGCTCATGGACATCCGGGAACA GCTAGCCCTGGAGTGGCGGGAAGACTTGAAGAACATCGAGGTGTGTGCGG TGCGGCAGCGGAACAAGCAACACTCACTTGCAAAGACCTTAACACATACC GTCGATCTGAGCATTGTCTGGAAAGGATAACTAAGTCTTTGCTGTGTGCG TATTTCTTTCTGAGAAACTGGCTGTAAAAGTCTCGGTTTGACCGCGCTTT GTCGGAGAACGTATCACCCGCCCGGTTGCCGCAAGCTGACGTGATGAGCG TTGGGACGAGTCGTCCTTATGTCTCACATGGAGTACCGACCCGCCTCAGA CATGAGGATGGTGTCGAAGACGAGGACGCCTGCTTGTTGTTTCGTTTTGA GCGGCCCGATCTCGTGGGTGTCACGGCCAGCCTTGTGTCTCGTGTTCGTC GCAGTAGACGCGCTGCTGTCTTTCGCGTCCGCCGAAAGTGTGCTGGGATC GCTGCTGTGTGTTTCGCCTCTAGTTAGCGGTTGATACCCGATCGGCGACT GTTTGTGTTTGGGGTCCTGCTTCGCTAAAAAAAAAGACAGAAAAAATGCT TTTGGCTCGGGGCTAGTCTGGGATGAAGGGCCTTGAAACGGAGGAGGCCG CAACTACCATTTTCAGCACCATGCTTCTGTCATCCTCACGTTTGGGGGAG GAGGGAGGGTAGCGTCTCATCTCTCCTCTTTCCTGCCCCAATTTATGGCT GTTTTCTTCTTCTTCCTGGCTGTTCACCGCTCGCTGCCCTCTTGAGTGCT GCCGCCGCTGCTGCCGCCACTCGTAAATCGCAAATCGTGAATCATGGAAA AAAAAAAAATCAGGTCGAGAACAACGAAATCGTCCGCCTGGACAACGACA GACGGAGGAGAGCCAGAGAGGCGGGGCCCGGGTACGACGAGGTGGAGCAG GGCGGCGGCGGCGGCAGCCGCAGGAGGTTGACGTACGACCACGGGCAAGC CTTCGGAGGGGACAGCAGCCCCCTCCGCTCCGACAACTACGAGACGCTGG TCGGCTACTTGACGGAGATC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9826:265..5884+

>mRNA_Ecto-sp13_S_contig9826.21473.1 ID=mRNA_Ecto-sp13_S_contig9826.21473.1|Name=mRNA_Ecto-sp13_S_contig9826.21473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9826:265..5884+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCGCCGTCTTCTGGCCGCTGTTTGCGCCGGCGCTGCTGCTCTGTT
TCTTCTGCATTGCGGCCATTGCTTTACCTTCGTCACTACAACTTCGCCCG
TGCTCTCGCCCCGGTCAACGGCGTACCCTCGGAGCAGATTTGCACCGTCT
AGTAGTAGAGGCGGCATCACGATGTCTGGATCAAGCAACGGCCGCGAGAG
CTATAGCTGGGACGAAGACGTGCTCGATAGAGCGGTGAAGGACATGCTTG
TCGACAGGGCGGTGGAGACGGTGCGACACCTGTGGAATGAGACCGGCGGG
GATATCTACGGTCAGTGGTTGGACCGTTTCACCGCCAGGCAGAACCTAGG
CGATGACGTCATTTCGACCATGGGCTGGGCGCGCTTCCTCATCAAGATGA
TGAGAGAGGAACCGGTGGAAGCGGTTGTGATCAGGACGGCGAAGAAGGAC
AGCCCCCAAGTTATCGAGGCGCAACGCAAGGCACGACTCTGGATACTTTT
TTCCTCGCCGCCATGCCAACCTCCGTGGCGACATTCCGTAAATCAGCTGT
CTGCGGACTGGGACGCCGAGGAAGAGGAGGAGATGAAGGTGGCCCTGGAC
TATCCCCCTCAGCTGAAGGCCGTTAAGAGGAGCGTGGTCGTGCAGCCGGC
GGAGCTAGCGAAAAAGCTCATGGACATCCGGGAACAGCTAGCCCTGGAGT
GGCGGGAAGACTTGAAGAACATCGAGGTCGAGAACAACGAAATCGTCCGC
CTGGACAACGACAGACGGAGGAGAGCCAGAGAGGCGGGGCCCGGGTACGA
CGAGGTGGAGCAGGGCGGCGGCGGCGGCAGCCGCAGGAGGTTGACGTACG
ACCACGGGCAAGCCTTCGGAGGGGACAGCAGCCCCCTCCGCTCCGACAAC
TACGAGACGCTGGTCGGCTACTTGACGGAGATC
back to top