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Homology
BLAST of mRNA_Ecto-sp13_S_contig9826.21473.1 vs. uniprot
Match: A0A6H5KLJ1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KLJ1_9PHAE) HSP 1 Score: 546 bits (1406), Expect = 3.970e-192 Identity = 290/311 (93.25%), Postives = 294/311 (94.53%), Query Frame = 1
Query: 1 MPRRLLAAVCAGAAALFLLHCGHCFTFVTTTSPVLSPRSTAYPRSRFAPSSSRGGITMSGSSNGRESYSWDEDVLDRAVKDMLVDRAVETVRHLWNETGGDIYGQWLDRFTARQNLGDDVISTMGWARFLIKMMREEPVEAVVIRTAKKDSPQVIEAQRKARLWILFSSPPCQPPWRHSVNQLSADWDAEEEEEMKVALDYPPQLKAVKRSVVVQPAELAKKLMDIREQLALEWREDLKNIEVENNEIVRLDNDRRRRAREAGPGYDEVEQGGXXXSRRRLTYDHGQAFGGDSSPLRSDNYETLVGYLTEI 933
MPRRLLAAV AG AALFLL CG FTFVTTTSPVLSPRST YP SRFAP S+RGGI+MSGSSNGRESYSWDEDVLDRAVKDMLVDRAVETVRHLWNETGGDIYGQWLDRFTARQNLGDDVISTMGWARFLIKMMREEPVEAVVIRTAKKDSPQVIEAQRKAR + PP PWRHSVNQLSADWDAEEEEEMKVALDYPPQLKAVKRSVVVQPAELAKKLMDIREQLALEWREDLKNIEVEN+EIVRLDNDRRRRAREAGPGYDEVEQGGXXXSRRRLTYDHGQAFGGDSSPLRSDNYETLVGYLTEI
Sbjct: 1 MPRRLLAAVFAGVAALFLLQCGDGFTFVTTTSPVLSPRSTVYPPSRFAPLSTRGGISMSGSSNGRESYSWDEDVLDRAVKDMLVDRAVETVRHLWNETGGDIYGQWLDRFTARQNLGDDVISTMGWARFLIKMMREEPVEAVVIRTAKKDSPQVIEAQRKARN---NARPPTLSPWRHSVNQLSADWDAEEEEEMKVALDYPPQLKAVKRSVVVQPAELAKKLMDIREQLALEWREDLKNIEVENDEIVRLDNDRRRRAREAGPGYDEVEQGGXXXSRRRLTYDHGQAFGGDSSPLRSDNYETLVGYLTEI 308
BLAST of mRNA_Ecto-sp13_S_contig9826.21473.1 vs. uniprot
Match: A0A2V3J0R6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J0R6_9FLOR) HSP 1 Score: 55.5 bits (132), Expect = 4.370e-5 Identity = 39/96 (40.62%), Postives = 53/96 (55.21%), Query Frame = 1
Query: 640 VQPAELAKKLMDIREQLALEWREDLKNIEVENNEIVRLDNDRRRRAREAGPGYDEVEQGGXXXSRRRLTYDHGQAFGGDSSPLRSDNYETLVGYLT 927
V+P LAK+++DIR+QLA EW DL+ IE+EN EI R+ A E DE + S+R+L +D F D +PLR NY L +T
Sbjct: 136 VEPFRLAKRILDIRKQLAAEWVGDLRCIEMENLEIQRM-------AIERALCSDEAQ----LESKRKLIFDS-DPFASDQTPLRYKNYHALKTLIT 219
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 0 |
| Start | 1 |
| Seed ortholog score | 74.3 |
| Seed ortholog evalue | 1.1e-10 |
| Seed eggNOG ortholog | 2880.D8LEG6 |
| Model size | 933 |
| Hectar predicted targeting category | chloroplast |
| Exons | 7 |
| EggNOG OGs | 2E04B@1,2S7JZ@2759 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-18_002530.1 |
| Cds size | 933 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464245.8597097-CDS-Ecto-sp13_S_contig9826:264..449 | 1681464245.8597097-CDS-Ecto-sp13_S_contig9826:264..449 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9826 265..449 + |
| 1681464245.883544-CDS-Ecto-sp13_S_contig9826:1510..1623 | 1681464245.883544-CDS-Ecto-sp13_S_contig9826:1510..1623 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9826 1511..1623 + |
| 1681464245.8982406-CDS-Ecto-sp13_S_contig9826:2573..2673 | 1681464245.8982406-CDS-Ecto-sp13_S_contig9826:2573..2673 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9826 2574..2673 + |
| 1681464245.9079447-CDS-Ecto-sp13_S_contig9826:3207..3330 | 1681464245.9079447-CDS-Ecto-sp13_S_contig9826:3207..3330 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9826 3208..3330 + |
| 1681464245.9174201-CDS-Ecto-sp13_S_contig9826:4121..4176 | 1681464245.9174201-CDS-Ecto-sp13_S_contig9826:4121..4176 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9826 4122..4176 + |
| 1681464245.9292307-CDS-Ecto-sp13_S_contig9826:4754..4904 | 1681464245.9292307-CDS-Ecto-sp13_S_contig9826:4754..4904 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9826 4755..4904 + |
| 1681464245.9400012-CDS-Ecto-sp13_S_contig9826:5677..5884 | 1681464245.9400012-CDS-Ecto-sp13_S_contig9826:5677..5884 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9826 5678..5884 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9826.21473.1 >prot_Ecto-sp13_S_contig9826.21473.1 ID=prot_Ecto-sp13_S_contig9826.21473.1|Name=mRNA_Ecto-sp13_S_contig9826.21473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=311bp
MPRRLLAAVCAGAAALFLLHCGHCFTFVTTTSPVLSPRSTAYPRSRFAPS SSRGGITMSGSSNGRESYSWDEDVLDRAVKDMLVDRAVETVRHLWNETGG DIYGQWLDRFTARQNLGDDVISTMGWARFLIKMMREEPVEAVVIRTAKKD SPQVIEAQRKARLWILFSSPPCQPPWRHSVNQLSADWDAEEEEEMKVALD YPPQLKAVKRSVVVQPAELAKKLMDIREQLALEWREDLKNIEVENNEIVR LDNDRRRRAREAGPGYDEVEQGGGGGSRRRLTYDHGQAFGGDSSPLRSDN YETLVGYLTEI back to topmRNA from alignment at Ecto-sp13_S_contig9826:265..5884+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig9826.21473.1 ID=mRNA_Ecto-sp13_S_contig9826.21473.1|Name=mRNA_Ecto-sp13_S_contig9826.21473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5620bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9826:265..5884+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGCCCCGCCGTCTTCTGGCCGCTGTTTGCGCCGGCGCTGCTGCTCTGTT
TCTTCTGCATTGCGGCCATTGCTTTACCTTCGTCACTACAACTTCGCCCG
TGCTCTCGCCCCGGTCAACGGCGTACCCTCGGAGCAGATTTGCACCGTCT
AGTAGTAGAGGCGGCATCACGATGTCTGGATCAAGGTGAGGGAGAGGACA
GTAATCGTAGCAGTTAGTGCTTGAAGGTGCGAGAGATCTGTGCGTCTTGG
TAAGCATCTTGGTGACGTTGGGGCTTTATTTTGAATTCCGTTTATCCCGC
CGCATCTCCGCAACCAGCTGTGCAGATCCCAACCTCGAGCCCAACCATCC
ACCACCAGCTTCGTGCTCCACGGAGAAGGCCGCTCGTCAACCCTCGCCAG
CTACTTCCACACTCTCCCAATGAGTTGGGCTTCGAGTGTAGAAATTATGG
TGATTGTCGTGCTGCCATATTTTCAATACTTATTCTCTCCAAGTCTCTCG
GAAAAAATGATACGATCGGGATTCGAAGTCTTTCAGCAGATACTTCTTGT
AACATACCGTACTAATTAGTAGGACACAGCAGCACTTCTCCGTTCACCTG
GACAACAGTTGACGCACAGCCGCCGGCTGCTGACGTGCCGGTTTTTCACG
CGTGTCCACTCGCCTCCGGCACCATAAGGTGTGCCTACATCCAGCCGTAC
GTCGGCATCCAGCCGTACGTCGGCAGGATGCTCAGAAACACGCCCAAACG
AATCTCAAATCAGTTCGTCGTTGGTCTCTCGAACCTGTCTAAACCTTGAT
CGCGAGAGAGAGACAGTCAGCTGTCTGTATTGTACACCTCTCACCCTCTA
CGAGTGTAGACTACCTCGGGCGGTTTCTTCGCATTCCATCTTCAGCACCG
TTCAAGAGGGAGGGCCCACAACAGCAGTAGCCCCTACCCGTAAGCGGGCG
CTTGTATATCGTCATTAATGTGGTTGCACACGTCTGCTACGCGGATCTGC
TGGCTGTGGAAGTGAGAAGCACTTCTGGCCGAACACCGCGCGGGAGACAA
CAACAAAAAAACGTTCCGCCGATGTGCGCATAACGCGGCCCATAGCTAGG
GATGTAAGTTGAATCGATGGTTTTCGTTTCCCGCGCTAGCTCACTACCTC
TTCTTGTCAAAGCATTCGATATCCAGTTCCGTTCCACTGTGCTCGCGACC
ACCAACCATGTGCTGGTTTTCGTTTTTCGCCATCGGGTTATGGCAGCAAC
GGCCGCGAGAGCTATAGCTGGGACGAAGACGTGCTCGATAGAGCGGTGAA
GGACATGCTTGTCGACAGGGCGGTGGAGACGGTGCGACACCTGTGGAATG
AGACCGGCGGTGAGAGCCTGCTTATTATTATTTTTTTAATATGACACAAC
GAATCCATCTCTATCTAAGAAGAGAGTCCAAGACAGATTAGCATTGAATC
CATAGCGTCAGTGAAGGCTACCTGTGTTTCCACGATTTCCCGAGCAGCAT
ACAGCGGCATCTCCCCCGTGGGTAACAGGGTCAACAACAAAGTGTGGTAG
CTGTTTTGTGCATCCATCTACATGTTATGCTCTTTTTGTTTCATCGATTT
GTCACGTACGTATGCAGCGATTTCACGAGGCGAGAGGAACGAACGAGCTC
TCTGCTTGTGGAGAGACTGGAGTACCGCCTGCGTATATACAACTCGTCGA
GGGTATACCGATTCTGGCCCGTGAACGTTGAGATCAGCGTATTATGCGGT
ATCTCAGAGCGTACCTTGTTGTCATCGTAGCTTCTGTTGTTTCCGTTACC
AGCGCATGACGGAACACTCTGGCATTGGCGAAGTATTACCCGACGTTCTT
CCTGACTCTCTCCCTCTCTCTCTCTCCCTCTCTCTCTCTGTCTCTCTCTC
TGTCTCTGTCTCTGTCTCACTTACACACGCTTAGTTATGCAGCCGGCCGG
CGCGGCCAATGCTTTGTGACAAGGATTTTGCTTTGCTCACCCGTATGTCT
TGGAACTTTCATTAGTACGGCTCGCCTCGTTGGCATGGGTGTTCTGTGTG
TAGAGAACACACGCTCATCACTTCACACCAGCTCTCCGCCTACCCTCCTC
CATCAATCAATCCCCCCTTTTTTCATGTATGTATGCATGCATGCAGGAGA
CACCCACCCACCCCCCGCTGTCTTTCCTTTTTTATCGGTCCCCCTCGTTT
TGTTCTCATGTATGTATGCCTGTGGGGGACATCCATCCACCCCCCTCTCT
GCTTCCCTACCTGTCGGTCTCCCTCCTTTTGTTGTTCATGGATGCTTGCA
TGCGTGCAGGGGATATCTACGGTCAGTGGTTGGACCGTTTCACCGCCAGG
CAGAACCTAGGCGATGACGTCATTTCGACCATGGGCTGGGCGCGCTTCCT
CATCAAGATGTAAGAGCTGTCGCCGACCATGGGGCGCGGGAGGGGCGGCG
GGAGAAGGGGCACACAAATGACAGACAAAAGCAAGCAACATCCACGTTTT
TTTTTGTGTGGCAAATTGCGTTTTGTTACCTTTCATGTCATCTACATCCC
ACTCCTGCCTGTTTCTCTGTTGAAACTGTCGGTATTTCATTTTGTTTTCT
GTTCTGTTTCGTGTAGTACGAACCAGCTGCCGAAGTTCCTTGGGACGGAG
ATTTTTTGTGTACTTTTACGGCGTTACAAGTCTAATGCTACACAGCGGAA
GGCACCAGTGGCCGTTCCTCCTGTATTTCATACCTTACACTGGTACGTAA
AGTCTTCCTGCTTCTTGCGCGTTCGGCAATCGTCAGTAAAAGTTACACCG
TCCCTACTCCACGGGGTCGCGTAAAGTGATAGACCCCTTGCCTACATCCT
GTCTGCCGGCCCCCCTGCCTTTCGCGCGCCCCGTACGTGCGCTATTGTTG
TTACTGTTGTTGTCGCCCTTTTTCGTTGCATTTCGGGGCTTAGGATGAGA
GAGGAACCGGTGGAAGCGGTTGTGATCAGGACGGCGAAGAAGGACAGCCC
CCAAGTTATCGAGGCGCAACGCAAGGCACGACTCTGGATACTTTTTTCCT
CGCCGCCATGCCAACCGTAATGTCTTGCCCTTGGTGCCTTTACCCTCTAC
CCTCTTCCTCTCTATCCGTCTTGTACACATGCGCCAAAGTACTTAGATTC
CCGGTCACGCAAGAGGAACGTACCGCCCACCCTCTCCCCTGCCCCCGAAT
AGTACTACCATCCGCGCTGCATTGTTGACTTTTGATAATTCAGAGCCAAA
GAAGTGAGTCCACTCCGTCTTTTAGCTCTTGTGCGAGAGTCACCTCCGAG
TGAGCACAATCGACATTCGCATACCATGTCTTCCGGGATTATTTTTTGGT
GGCGAGGAAGGGGATAGGTTTCACAGCAGCACATTGTTGTCTGAGATTTT
TTTCTCTTGGCCGATGGTACCAACGGTTGAGTTGTGACGGGTGCCGTTTA
GATCAATGCTGGCTGTTTGTTTCGTTCTGGAGGCCTGTTGGGTCAAAGGC
CACACGTCGGTGACGGGCCGACAGGAACCAACCCTTTCCTCTGACGCGAA
TCGCCAGACTGACACACACCGGTTGAGCGCTATATCGCCGTGTCTGACGC
GTCTGCGAAGCCCGACATGCCCCCCCGATGTGCTCTGAACGATTCCCAGG
ATCTAGTGTTCAAAGGATCTAGTGTTCAAATTTCCTGCGAGTCACGGATG
ATACCTTCCGAGCACACATCCCTTGCCACACACAGGCATATACCTCCCCC
CCCCCCCCCCCTCTACTGCGTGTACGCATGACAATACCTTGTGGCAACCC
CCCCCTTGTCCCTGCCCCATTCTCCCCCCAGAATAACGCCCGTCCACCGA
CGCTGAGTCCGTGGCGACATTCCGTAAATCAGCTGTCTGCGGACTGGGAC
GCCGAGGAAGAGGTGGGGGTTTGAGTCGCGCCAACGCCAGGCCGTGGTTG
ACGTACAAAGAGCGCCGATCACCCGCAAGAGCTTTGTTCTTCTACAGTTT
GACGGGGAACAATTTAAGCTTGGAAAATAGCTCAGACATCGAGCAGTAGC
TCACGTTTTTCGTGGTGTAATCATGATCAAGAGTCCATTTTTGTGTACGT
GGTCGCTGTTTGACCGATCGATGCGACATCTGATGCGAGGCAGGGCACCT
TGCCCCCTCCTAGTCAGAGGAAGAATGTATCCTGCGGGACCCCCTTGACC
TCGAAGCTTCCACCTGCTACAAGAGTGTGGCCAAACAGAATGGACTCGGC
TCCAGGCCTGCTTGTGTCTTTGGCCACTTGACTACCAAAGAACTTGGGGG
AACCGTGTGCGGATGGACAATGAACACTCTCCATATCCGACTCTGCTCCG
TCCCGATACTTTTCGGAACAGACTGTTCGAGAAATTGGTCCAATGCATGA
TACTGAAGCCCCCTTCCCAATCTCCCAGGCACGATGCAGGTAGGATGACC
CCCCCCCCCCCCCCTCACACAATCACTGCTACGATGGTAGGAGGAGATGA
AGGTGGCCCTGGACTATCCCCCTCAGCTGAAGGCCGTTAAGAGGAGCGTG
GTCGTGCAGCCGGCGGAGCTAGCGAAAAAGCTCATGGACATCCGGGAACA
GCTAGCCCTGGAGTGGCGGGAAGACTTGAAGAACATCGAGGTGTGTGCGG
TGCGGCAGCGGAACAAGCAACACTCACTTGCAAAGACCTTAACACATACC
GTCGATCTGAGCATTGTCTGGAAAGGATAACTAAGTCTTTGCTGTGTGCG
TATTTCTTTCTGAGAAACTGGCTGTAAAAGTCTCGGTTTGACCGCGCTTT
GTCGGAGAACGTATCACCCGCCCGGTTGCCGCAAGCTGACGTGATGAGCG
TTGGGACGAGTCGTCCTTATGTCTCACATGGAGTACCGACCCGCCTCAGA
CATGAGGATGGTGTCGAAGACGAGGACGCCTGCTTGTTGTTTCGTTTTGA
GCGGCCCGATCTCGTGGGTGTCACGGCCAGCCTTGTGTCTCGTGTTCGTC
GCAGTAGACGCGCTGCTGTCTTTCGCGTCCGCCGAAAGTGTGCTGGGATC
GCTGCTGTGTGTTTCGCCTCTAGTTAGCGGTTGATACCCGATCGGCGACT
GTTTGTGTTTGGGGTCCTGCTTCGCTAAAAAAAAAGACAGAAAAAATGCT
TTTGGCTCGGGGCTAGTCTGGGATGAAGGGCCTTGAAACGGAGGAGGCCG
CAACTACCATTTTCAGCACCATGCTTCTGTCATCCTCACGTTTGGGGGAG
GAGGGAGGGTAGCGTCTCATCTCTCCTCTTTCCTGCCCCAATTTATGGCT
GTTTTCTTCTTCTTCCTGGCTGTTCACCGCTCGCTGCCCTCTTGAGTGCT
GCCGCCGCTGCTGCCGCCACTCGTAAATCGCAAATCGTGAATCATGGAAA
AAAAAAAAATCAGGTCGAGAACAACGAAATCGTCCGCCTGGACAACGACA
GACGGAGGAGAGCCAGAGAGGCGGGGCCCGGGTACGACGAGGTGGAGCAG
GGCGGCGGCGGCGGCAGCCGCAGGAGGTTGACGTACGACCACGGGCAAGC
CTTCGGAGGGGACAGCAGCCCCCTCCGCTCCGACAACTACGAGACGCTGG
TCGGCTACTTGACGGAGATC back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig9826:265..5884+ >mRNA_Ecto-sp13_S_contig9826.21473.1 ID=mRNA_Ecto-sp13_S_contig9826.21473.1|Name=mRNA_Ecto-sp13_S_contig9826.21473.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=933bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9826:265..5884+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGCCCCGCCGTCTTCTGGCCGCTGTTTGCGCCGGCGCTGCTGCTCTGTT TCTTCTGCATTGCGGCCATTGCTTTACCTTCGTCACTACAACTTCGCCCG TGCTCTCGCCCCGGTCAACGGCGTACCCTCGGAGCAGATTTGCACCGTCT AGTAGTAGAGGCGGCATCACGATGTCTGGATCAAGCAACGGCCGCGAGAG CTATAGCTGGGACGAAGACGTGCTCGATAGAGCGGTGAAGGACATGCTTG TCGACAGGGCGGTGGAGACGGTGCGACACCTGTGGAATGAGACCGGCGGG GATATCTACGGTCAGTGGTTGGACCGTTTCACCGCCAGGCAGAACCTAGG CGATGACGTCATTTCGACCATGGGCTGGGCGCGCTTCCTCATCAAGATGA TGAGAGAGGAACCGGTGGAAGCGGTTGTGATCAGGACGGCGAAGAAGGAC AGCCCCCAAGTTATCGAGGCGCAACGCAAGGCACGACTCTGGATACTTTT TTCCTCGCCGCCATGCCAACCTCCGTGGCGACATTCCGTAAATCAGCTGT CTGCGGACTGGGACGCCGAGGAAGAGGAGGAGATGAAGGTGGCCCTGGAC TATCCCCCTCAGCTGAAGGCCGTTAAGAGGAGCGTGGTCGTGCAGCCGGC GGAGCTAGCGAAAAAGCTCATGGACATCCGGGAACAGCTAGCCCTGGAGT GGCGGGAAGACTTGAAGAACATCGAGGTCGAGAACAACGAAATCGTCCGC CTGGACAACGACAGACGGAGGAGAGCCAGAGAGGCGGGGCCCGGGTACGA CGAGGTGGAGCAGGGCGGCGGCGGCGGCAGCCGCAGGAGGTTGACGTACG ACCACGGGCAAGCCTTCGGAGGGGACAGCAGCCCCCTCCGCTCCGACAAC TACGAGACGCTGGTCGGCTACTTGACGGAGATC back to top
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