mRNA_Ecto-sp13_S_contig126.2151.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig126.2151.1
Unique NamemRNA_Ecto-sp13_S_contig126.2151.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig126.2151.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.700e-8
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 3 
Query:    3 MFLSVGKVNVTPQILQVRWLKMISQSFTSRTRCLG 107
            MFLSVGKVNVTPQILQV WL+ ISQSF S  RCLG
Sbjct:  963 MFLSVGKVNVTPQILQVNWLETISQSFMSHHRCLG 997
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig126.2151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQA4_ECTSI3.700e-882.86Cleavage and polyadenylation specificity factor su... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig126contigEcto-sp13_S_contig126:35991..36307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score60.5
Seed ortholog evalue5.6e-07
Seed eggNOG ortholog2880.D7FQA4
Preferred nameCPSF2
Model size318
KEGG koko:K14402,ko:K17606
KEGG Pathwayko03015,ko04136,ko04138,ko04140,map03015,map04136,map04138,map04140
Hectar predicted targeting categorymitochondrion
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005847,GO:0005849,GO:0005911,GO:0006139,GO:0006351,GO:0006353,GO:0006366,GO:0006369,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006398,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0031047,GO:0031123,GO:0031124,GO:0031503,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033036,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0040029,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576
Exons1
EggNOG free text desc.mRNA cleavage
EggNOG OGsCOG1236@1,KOG1135@2759
Cds size315
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462672.0580292-UTR-Ecto-sp13_S_contig126:35990..359921681462672.0580292-UTR-Ecto-sp13_S_contig126:35990..35992Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig126 35991..35992 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462672.0710704-CDS-Ecto-sp13_S_contig126:35992..363071681462672.0710704-CDS-Ecto-sp13_S_contig126:35992..36307Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig126 35993..36307 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig126.2151.1prot_Ecto-sp13_S_contig126.2151.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig126 35993..36307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig126.2151.1

>prot_Ecto-sp13_S_contig126.2151.1 ID=prot_Ecto-sp13_S_contig126.2151.1|Name=mRNA_Ecto-sp13_S_contig126.2151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MFLSVGKVNVTPQILQVRWLKMISQSFTSRTRCLGSSGQFLCLSVSSADR
VVKRISPFCRNVVVTDHLLSNFEHRPTVENGARRLLYVGALLLFLSSSEL
SSLLL
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mRNA from alignment at Ecto-sp13_S_contig126:35991..36307+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig126.2151.1 ID=mRNA_Ecto-sp13_S_contig126.2151.1|Name=mRNA_Ecto-sp13_S_contig126.2151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=317bp|location=Sequence derived from alignment at Ecto-sp13_S_contig126:35991..36307+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCATGTTCCTGAGCGTGGGGAAGGTGAACGTCACGCCACAAATCCTACAG
GTGAGATGGCTCAAGATGATTTCACAGAGTTTTACGTCTCGCACCCGCTG
TTTAGGTTCAAGTGGCCAATTTCTTTGCCTCTCGGTCAGTAGCGCTGATC
GAGTGGTTAAAAGGATAAGCCCCTTTTGTCGTAACGTCGTGGTGACGGAC
CACTTGTTGTCGAATTTCGAACACCGTCCAACCGTGGAAAACGGAGCCAG
ACGGCTTCTGTACGTAGGCGCACTTCTGCTGTTCCTCAGCTCATCTGAAC
TATCCTCTCTTCTCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig126:35991..36307+

>mRNA_Ecto-sp13_S_contig126.2151.1 ID=mRNA_Ecto-sp13_S_contig126.2151.1|Name=mRNA_Ecto-sp13_S_contig126.2151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig126:35991..36307+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCCTGAGCGTGGGGAAGGTGAACGTCACGCCACAAATCCTACAGGT
GAGATGGCTCAAGATGATTTCACAGAGTTTTACGTCTCGCACCCGCTGTT
TAGGTTCAAGTGGCCAATTTCTTTGCCTCTCGGTCAGTAGCGCTGATCGA
GTGGTTAAAAGGATAAGCCCCTTTTGTCGTAACGTCGTGGTGACGGACCA
CTTGTTGTCGAATTTCGAACACCGTCCAACCGTGGAAAACGGAGCCAGAC
GGCTTCTGTACGTAGGCGCACTTCTGCTGTTCCTCAGCTCATCTGAACTA
TCCTCTCTTCTCCTC
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