prot_Ecto-sp13_S_contig126.2151.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig126.2151.1
Unique Nameprot_Ecto-sp13_S_contig126.2151.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length105
Homology
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BLAST of mRNA_Ecto-sp13_S_contig126.2151.1 vs. uniprot
Match: D7FQA4_ECTSI (Cleavage and polyadenylation specificity factor subunit 2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA4_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 3.700e-8
Identity = 29/35 (82.86%), Postives = 30/35 (85.71%), Query Frame = 0 
Query:    1 MFLSVGKVNVTPQILQVRWLKMISQSFTSRTRCLG 35
            MFLSVGKVNVTPQILQV WL+ ISQSF S  RCLG
Sbjct:  963 MFLSVGKVNVTPQILQVNWLETISQSFMSHHRCLG 997
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig126.2151.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQA4_ECTSI3.700e-882.86Cleavage and polyadenylation specificity factor su... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 85..104
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 105..105
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig126contigEcto-sp13_S_contig126:35993..36307 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig126.2151.1mRNA_Ecto-sp13_S_contig126.2151.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig126 35991..36307 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig126.2151.1 ID=prot_Ecto-sp13_S_contig126.2151.1|Name=mRNA_Ecto-sp13_S_contig126.2151.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MFLSVGKVNVTPQILQVRWLKMISQSFTSRTRCLGSSGQFLCLSVSSADR
VVKRISPFCRNVVVTDHLLSNFEHRPTVENGARRLLYVGALLLFLSSSEL
SSLLL
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