prot_Ecto-sp13_S_contig9811.21464.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig9811.21464.1
Unique Name	prot_Ecto-sp13_S_contig9811.21464.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	140

Homology

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BLAST of mRNA_Ecto-sp13_S_contig9811.21464.1 vs. uniprot
Match: D8LSN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN0_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 4.630e-80
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 0

Query:   32 MVAAVALLPEVNARYPQDALRCLASLKEPEGLLICPEHRNGYCVKEVSDLAEEDCGRTTYFGDKWNAQTGKCEYRKCEATCLESSWDFEFEGEAYERNRFCCDFNYCNG 140
            MVAAVALLPEVNARYPQDALRCLASLKEPEGLLICPEHRNGYCVKEVSDLAEEDCGRTTYFGDKWNAQTGKCEYRKCEATCLESSWDFEFEGEAYERNRFCCDFNYCNG
Sbjct:    1 MVAAVALLPEVNARYPQDALRCLASLKEPEGLLICPEHRNGYCVKEVSDLAEEDCGRTTYFGDKWNAQTGKCEYRKCEATCLESSWDFEFEGEAYERNRFCCDFNYCNG 109

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BLAST of mRNA_Ecto-sp13_S_contig9811.21464.1 vs. uniprot
Match: A0A835YZS6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS6_9STRA)

HSP 1 Score: 129 bits (324), Expect = 6.570e-36
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 0

Query:   43 NARYPQDALRCLASLKEPEGLLICPEHRNGYCVKEV---SDLAEEDCGRTTYFGDKWNAQTGKCEYRKCEATCLESSWDFEFEGEAYERNRFCCDFNYCN 139
             + YPQ AL+C +S+ EP G  ICPE  N +CVKE+   + +A+ +CGRT YFGD +N ++GKCE RKC A C ES+W +EFEG  Y+R RFCC++ +CN
Sbjct:    3 QSNYPQKALKCKSSMTEPFGQTICPEFANNFCVKEIMGMNAIAKANCGRTKYFGDTYNQKSGKCELRKCAAACEESAWSYEFEGITYQRQRFCCNYEFCN 102

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig9811.21464.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig9811.21464.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LSN0_ECTSI	4.630e-80	100.00	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835YZS6_9STRA	6.570e-36	53.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 40..140
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..39

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig9811	contig	Ecto-sp13_S_contig9811:118..1290 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig9811.21464.1	mRNA_Ecto-sp13_S_contig9811.21464.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig9811 118..1290 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig9811.21464.1 ID=prot_Ecto-sp13_S_contig9811.21464.1|Name=mRNA_Ecto-sp13_S_contig9811.21464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
MARNLTLRRCALSQGIGRSVKGGGAVTAFISMVAAVALLPEVNARYPQDA
LRCLASLKEPEGLLICPEHRNGYCVKEVSDLAEEDCGRTTYFGDKWNAQT
GKCEYRKCEATCLESSWDFEFEGEAYERNRFCCDFNYCNG