mRNA_Ecto-sp13_S_contig9811.21464.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9811.21464.1
Unique NamemRNA_Ecto-sp13_S_contig9811.21464.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9811.21464.1 vs. uniprot
Match: D8LSN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSN0_ECTSI)

HSP 1 Score: 241 bits (615), Expect = 4.630e-80
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 
Query:   94 MVAAVALLPEVNARYPQDALRCLASLKEPEGLLICPEHRNGYCVKEVSDLAEEDCGRTTYFGDKWNAQTGKCEYRKCEATCLESSWDFEFEGEAYERNRFCCDFNYCNG 420
            MVAAVALLPEVNARYPQDALRCLASLKEPEGLLICPEHRNGYCVKEVSDLAEEDCGRTTYFGDKWNAQTGKCEYRKCEATCLESSWDFEFEGEAYERNRFCCDFNYCNG
Sbjct:    1 MVAAVALLPEVNARYPQDALRCLASLKEPEGLLICPEHRNGYCVKEVSDLAEEDCGRTTYFGDKWNAQTGKCEYRKCEATCLESSWDFEFEGEAYERNRFCCDFNYCNG 109
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BLAST of mRNA_Ecto-sp13_S_contig9811.21464.1 vs. uniprot
Match: A0A835YZS6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZS6_9STRA)

HSP 1 Score: 129 bits (324), Expect = 6.570e-36
Identity = 53/100 (53.00%), Postives = 72/100 (72.00%), Query Frame = 1 
Query:  127 NARYPQDALRCLASLKEPEGLLICPEHRNGYCVKEV---SDLAEEDCGRTTYFGDKWNAQTGKCEYRKCEATCLESSWDFEFEGEAYERNRFCCDFNYCN 417
             + YPQ AL+C +S+ EP G  ICPE  N +CVKE+   + +A+ +CGRT YFGD +N ++GKCE RKC A C ES+W +EFEG  Y+R RFCC++ +CN
Sbjct:    3 QSNYPQKALKCKSSMTEPFGQTICPEFANNFCVKEIMGMNAIAKANCGRTKYFGDTYNQKSGKCELRKCAAACEESAWSYEFEGITYQRQRFCCNYEFCN 102
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9811.21464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSN0_ECTSI4.630e-80100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YZS6_9STRA6.570e-3653.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9811contigEcto-sp13_S_contig9811:118..1290 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size420
Hectar predicted targeting categorysignal peptide
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_002280.1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464244.981118-CDS-Ecto-sp13_S_contig9811:117..2411681464244.981118-CDS-Ecto-sp13_S_contig9811:117..241Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9811 118..241 -
1681464244.9949386-CDS-Ecto-sp13_S_contig9811:659..7461681464244.9949386-CDS-Ecto-sp13_S_contig9811:659..746Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9811 660..746 -
1681464245.0123408-CDS-Ecto-sp13_S_contig9811:1081..12901681464245.0123408-CDS-Ecto-sp13_S_contig9811:1081..1290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9811 1082..1290 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9811.21464.1prot_Ecto-sp13_S_contig9811.21464.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9811 118..1290 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9811.21464.1

>prot_Ecto-sp13_S_contig9811.21464.1 ID=prot_Ecto-sp13_S_contig9811.21464.1|Name=mRNA_Ecto-sp13_S_contig9811.21464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
MARNLTLRRCALSQGIGRSVKGGGAVTAFISMVAAVALLPEVNARYPQDA
LRCLASLKEPEGLLICPEHRNGYCVKEVSDLAEEDCGRTTYFGDKWNAQT
GKCEYRKCEATCLESSWDFEFEGEAYERNRFCCDFNYCNG
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mRNA from alignment at Ecto-sp13_S_contig9811:118..1290-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9811.21464.1 ID=mRNA_Ecto-sp13_S_contig9811.21464.1|Name=mRNA_Ecto-sp13_S_contig9811.21464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1173bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9811:118..1290- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCGAAACCTCACGCTTCGGCGCTGCGCATTGTCCCAAGGGATCGG
AAGGTCGGTCAAAGGGGGGGGTGCTGTGACCGCGTTCATCTCGATGGTGG
CGGCGGTCGCCCTCCTACCCGAAGTCAACGCGAGATACCCTCAGGATGCG
CTCCGGTGCCTGGCCTCCCTGAAGGAACCAGAAGGGCTGCTAATCTGCCC
GGAGCACAGGTGTGTCTATGTGGTCCCCGGACGCAGGACAAGTAGCTGGG
CTACATCAGTGCGACCGTGAGGACCTACTTCGCTTCCTATTATTCTGGAT
GCGATCTTGGTGAAGATCTTGCAGAGAGATAGAGATCTATCGCGAAGGTT
GGAGATCTGTTTTCAAAACGAACCACGCGGCTGGTTTCGGTGTTTTAGAA
GCCTAGAACCCATCGCGTGCAACACTTCACAAGACTTACAATATTCCGTG
AGGGTTTTCGCAGACATCATACAACCTCATCTCTGTTCCTAGATTCTTGC
TGCACTCATTCGACGCGGTTTTTGCGAATTTTGTGTTTCTCAAGGAACGG
GTACTGCGTGAAGGAGGTATCGGACTTGGCGGAAGAGGACTGCGGTCGGA
CGACCTACTTCGGGGACAAGTGGAATGCTCAGTGAGTAATATTTTGCTGC
CACTGTTGCAATATTTAAGCTTGACCCGCGGGTAAGTCCTTTCCTTTCCC
TTCCTTGTGATTGCGGCTGTGATGGCTGTGGCTGTGGCTACGCAGTGTGG
CTGTTTGTCGTCATCGGGATGCCGAACAATGGGAGGAACTGGTCTGAGAA
GACACTACCGCTGTTGATGTCATAGAATTGCATTCATCAGCGTGAGAACA
AGCCAGCCACAACTGCTCCTAGACGAGGTCACACCAAAAAGTGCTGCTAC
TCCAATTGTTATCTATGCTTTCCAACACGCTGTGACGGGATAAAACATTC
ACACTCACTGTCATGCGAGCTTGTTGTTTGACCCTCCGCATGCATTGCCG
CTGGTTGTCTGACCACACAGCAACATATTCTCTCGTGCAACATCAACAGG
ACCGGTAAATGTGAATACCGCAAGTGCGAGGCGACCTGCCTAGAGTCCAG
CTGGGATTTTGAGTTCGAGGGGGAGGCGTACGAGAGAAATAGGTTCTGTT
GCGACTTCAACTATTGCAACGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9811:118..1290-

>mRNA_Ecto-sp13_S_contig9811.21464.1 ID=mRNA_Ecto-sp13_S_contig9811.21464.1|Name=mRNA_Ecto-sp13_S_contig9811.21464.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9811:118..1290- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCGAAACCTCACGCTTCGGCGCTGCGCATTGTCCCAAGGGATCGG
AAGGTCGGTCAAAGGGGGGGGTGCTGTGACCGCGTTCATCTCGATGGTGG
CGGCGGTCGCCCTCCTACCCGAAGTCAACGCGAGATACCCTCAGGATGCG
CTCCGGTGCCTGGCCTCCCTGAAGGAACCAGAAGGGCTGCTAATCTGCCC
GGAGCACAGGAACGGGTACTGCGTGAAGGAGGTATCGGACTTGGCGGAAG
AGGACTGCGGTCGGACGACCTACTTCGGGGACAAGTGGAATGCTCAGACC
GGTAAATGTGAATACCGCAAGTGCGAGGCGACCTGCCTAGAGTCCAGCTG
GGATTTTGAGTTCGAGGGGGAGGCGTACGAGAGAAATAGGTTCTGTTGCG
ACTTCAACTATTGCAACGGT
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