mRNA_Ecto-sp13_S_contig12597.2144.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12597.2144.1
Unique NamemRNA_Ecto-sp13_S_contig12597.2144.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12597.2144.1 vs. uniprot
Match: A0A6H5KUF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUF6_9PHAE)

HSP 1 Score: 367 bits (941), Expect = 4.300e-122
Identity = 211/258 (81.78%), Postives = 223/258 (86.43%), Query Frame = 1 
Query:    1 MESKGEGNLLARPSQAKLPLYGVTAILLLLLLLASAGVSSFADPSAEGAEVVTLSLSTSPQESESLSSGXXXXXXXXXXXXXXXXXXDS-RACTVDDLVPTHGHYEDGGGSDGGDDLSGMWDTSSMVAPPFDCTCGTLKASYFCPNLGTGGYPKWNTSGGCERRQRSALQNEPLPPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSRCLRMVVDRESLAQEDTLVDEGLQCRSCVNSHKLRRTLLEHKCISDESKKEAC 771
            M+S+ EG LLARPS+AKLPLYGV A LLLLLLLASAGVS FADPSAEGA+VVTLS+ST  Q        XXXXXXXXXXXXXXXXXX   RACTVDDLVP HG+YEDGGG DGG DLSGMWD SSMVAPPFDCTC TLKASYFCPNLGTGGYPKWNTSG CERR+RSALQNEPLPP FRVLFYGNSHLRQVVEGIVCAYS+SIRSRCLR+VV   SLA ED LVDE LQCR CVNSHK R  LLEH+CIS+E+KKEAC
Sbjct:    1 MKSQEEGKLLARPSKAKLPLYGVMAALLLLLLLASAGVSGFADPSAEGAKVVTLSVSTPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRACTVDDLVPPHGNYEDGGG-DGGYDLSGMWDKSSMVAPPFDCTCRTLKASYFCPNLGTGGYPKWNTSGACERRERSALQNEPLPPAFRVLFYGNSHLRQVVEGIVCAYSTSIRSRCLRVVVGGGSLAPEDALVDEDLQCRGCVNSHKQRNMLLEHECISEEAKKEAC 257
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BLAST of mRNA_Ecto-sp13_S_contig12597.2144.1 vs. uniprot
Match: D7G2P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2P7_ECTSI)

HSP 1 Score: 342 bits (877), Expect = 4.350e-113
Identity = 204/265 (76.98%), Postives = 216/265 (81.51%), Query Frame = 1 
Query:    1 MESKGEGNLLARPSQAKLPLYGVTAILLLLLLLASAGVSSFADPSAEGAEVVTLSLSTSPQESESLSSGXXXXXXXXXXXXXXXXXXDSRACTVDDLVPTHGHYEDGGGSDGGDDLSGMWDTSSMVAPPFDCTCG-------TLKASYFCPNLGTGGYPKWNTSGGCERRQRSALQNEPLPPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSRCLRMVVDRESLAQEDTLVDEGLQCRSCVNSHKLRRTLLEHKCISDESKKEACR 774
            MES+GEG LLARPSQAKLPLYGV A+ L++LLLASA VSSFADPSAEGAEVVTLSLST PQESESL   XXXXXXXXXXXXXXXXXX                       D   DLSGMWD SSMVAPPFDCTC         L ASYFCPNLGTGGYPKW+TSGGCERR+RSALQNEPLPPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSRCLR+VVD ESLAQEDTLVDE LQCRSCV S KLRRTLLEH+CIS+++K+EACR
Sbjct:    1 MESQGEGKLLARPSQAKLPLYGVMAVSLVVLLLASAVVSSFADPSAEGAEVVTLSLSTPPQESESLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXD---DLSGMWDKSSMVAPPFDCTCSGSGRAGRALNASYFCPNLGTGGYPKWSTSGGCERRERSALQNEPLPPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSRCLRVVVDGESLAQEDTLVDEDLQCRSCVYSRKLRRTLLEHECISEDAKEEACR 262
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BLAST of mRNA_Ecto-sp13_S_contig12597.2144.1 vs. uniprot
Match: A0A6H5KAG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAG2_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 4.620e-22
Identity = 60/165 (36.36%), Postives = 79/165 (47.88%), Query Frame = 1 
Query:  268 RACTVDDLVPTHGHYEDGGGSDGGDDLSGMWDTSSMVAPPFDCTCGTLKASYFCPNLGTGGYPKWN----TSGGCERRQRSALQNE--PLPPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSRCLRMVVDRESLAQEDTLVDEGLQCRSCVNSHKLRRTLLEHKCI 744
            R CTVD+L+P          S+      G+W       PP+ C C   KA YFCPNLG+G YP+W     T G C    R  + +   P PP  +VLFYGNSH+RQ +E I+C +   + S+ LR V    +       V     CR+C      + TLL   CI
Sbjct:  120 RYCTVDELLPLKKSPHSALSSEWSQGQGGVW------KPPYGCDCAFSKARYFCPNLGSGVYPRWVPRAVTRGDCRSATREEMSSRGAPFPPDSKVLFYGNSHMRQTLEAILCLFQKDVVSKRLRFVSATNANETAYLEVPGDTPCRACSVWTFFKDTLLNSGCI 278
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BLAST of mRNA_Ecto-sp13_S_contig12597.2144.1 vs. uniprot
Match: A0A835Z986_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z986_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.230e-7
Identity = 32/89 (35.96%), Postives = 44/89 (49.44%), Query Frame = 1 
Query:  352 GMWDTSSMVAPP-FDCTCGTLKASYFCPNLGTGGYPKWNTSGGCERRQRSALQNEPLPPGFRVLFYGNSHLRQVVEGIVCAYSSSIRSR 615
            G W+  +    P +DC+C   KA Y C        P W      +   R+   N  +PPG RVLF GNSH+RQ+VE  +CA+   +  R
Sbjct:   57 GSWEQRTAHQEPLYDCSCPLAKARYHCHEFNAVDGPVWVPRALVKGECRALPHNPLVPPGARVLFAGNSHMRQLVESGLCAHRHEVARR 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12597.2144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5KUF6_9PHAE4.300e-12281.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2P7_ECTSI4.350e-11376.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KAG2_9PHAE4.620e-2236.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z986_9STRA1.230e-735.96Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12597contigEcto-sp13_S_contig12597:58..4337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size801
Hectar predicted targeting categorysignal peptide
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_003000.1
Cds size801
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462671.8722727-CDS-Ecto-sp13_S_contig12597:57..2911681462671.8722727-CDS-Ecto-sp13_S_contig12597:57..291Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12597 58..291 -
1681462671.8827848-CDS-Ecto-sp13_S_contig12597:1050..11981681462671.8827848-CDS-Ecto-sp13_S_contig12597:1050..1198Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12597 1051..1198 -
1681462671.8951566-CDS-Ecto-sp13_S_contig12597:1516..18841681462671.8951566-CDS-Ecto-sp13_S_contig12597:1516..1884Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12597 1517..1884 -
1681462671.9109042-CDS-Ecto-sp13_S_contig12597:4286..43371681462671.9109042-CDS-Ecto-sp13_S_contig12597:4286..4337Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12597 4287..4337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12597.2144.1prot_Ecto-sp13_S_contig12597.2144.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12597 58..4337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12597.2144.1

>prot_Ecto-sp13_S_contig12597.2144.1 ID=prot_Ecto-sp13_S_contig12597.2144.1|Name=mRNA_Ecto-sp13_S_contig12597.2144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=267bp
MESKGEGNLLARPSQAKLPLYGVTAILLLLLLLASAGVSSFADPSAEGAE
VVTLSLSTSPQESESLSSGGAGEEGGGIAGNGGGGGGDSRACTVDDLVPT
HGHYEDGGGSDGGDDLSGMWDTSSMVAPPFDCTCGTLKASYFCPNLGTGG
YPKWNTSGGCERRQRSALQNEPLPPGFRVLFYGNSHLRQVVEGIVCAYSS
SIRSRCLRMVVDRESLAQEDTLVDEGLQCRSCVNSHKLRRTLLEHKCISD
ESKKEACRWVCCCCCW*
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mRNA from alignment at Ecto-sp13_S_contig12597:58..4337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12597.2144.1 ID=mRNA_Ecto-sp13_S_contig12597.2144.1|Name=mRNA_Ecto-sp13_S_contig12597.2144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4280bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12597:58..4337- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTCGAAGGGAGAAGGCAACTTGCTGGCGCGACCATCTCAAGCCAA
GGTATGCATATGGGTACGCGAAAACAGGAAGCAGTCACGCACGTAAATTC
GATGCATGTGAAGGTGTTGTGGGTTCCATCGCGACCGATGGTGGGAACGG
TGCGACCGTGCCCGGGAACCTGAAAATCACCTTGTTCTGTCCGGCATGTC
TTCTCTGAAAGAGAGACAAGAAACCATTTTTTTATTTTTTTCTCTTCTGC
CGTTCGGCTCCTACTTCGTAGACACGAAGACACCAGGTTGCCCTATACTA
CGATGTAGAGGGTTGGTTCTAATCACCACACGCAGCGCCGGCTGGTCTTG
CTTGTTATAACGACGGGACGCTCCATGGCTTGCATCTTATTCGAATGTTG
ACCCAGCCTGTCTTGCGTTGAGGTTTCTCAGGTGACGAGTGTTGCAACGG
GATTATCCCTTGGAGACTGCTTGTACCATTTTTGGCCTAGGGGGGTACTG
CCGCACTCACACAGCAGTGGTATTCTGGTACCATCTACAAAAACTGAAGC
AGCAGAACCATTCTATTCTAGCGTGGAGGAGGAGAAATCCGAGAGTTGGT
TTGTCGCGCGTGGAGGTACCCACCGCCGTCCATCGCAAACGCCCACTTGA
AGGGATGTGCCCACGTGCGCCCTCGCGTGTCATTGTGTAGCAGGCCGTAC
GGGTACACCAACACTACATAAATACTCAAGACACGTCCTCCATACTTTGT
CATTCCAATGTAACAAATGTCTTTGGTTGCATTGCTACACTGCTGCTGTG
GTAGTCGACAATCGTAGATACCCTGCTGTGGGTGCTTTTGTGACTGTTGT
TTTGTGGTCTCTAGAGTTGGTTCTTTGAACAGACTCATTTAACTCGAGCA
GGTGCCCTTCCCCTTACTCTGTTGTGAAGATTCACTCCTTTCGGACGGGG
TACTACAGGATCTACGCTCGTATATGTATGCATACTTCAGACCGGCAAAC
TTCTCCAGTTCATTTTGCGATCGAAACGAACACCATTCATGGGTTGCATA
AGATATCACACACCTAGACCGATTTTCACAGCTCGACTACTCCACGACGA
AGAGGATGCCGTAATTGAAGTGTGTGTTATCCGGAAGCTCTCGAAGAGAC
CGTTCCAACGCCACCATCTTCGGCACCGTCACTACTTGCTGCTGAGATGG
TATCGAGCTTCGATTATCGGTCCAGAATGTGTGATATCTTTGCAACCCAC
GGAAGCCGTTTCCGCACTTCCGTAGTAGGACACCCCGGCCGGAAGCGACT
CAGCCGGGTGCACCTTCACTCAGCGTGTGTTGGAGGCTACTCGACAGAGA
TGTTTCACCTGAGTCACTCCTCTAGGCAAAAACACGCTCTCTCGACAAGA
GCCCGCGAGCGCGATAAAGAAAAACAGGTGCCGACACAACAATCACGATA
CATGTGTAAAATGTCTGCAGACGTCGGCACGGAAAAGTTTCGGAACGTAG
GCAGACTTTTCTGGGGCCAACCTTGTCGTGGCCGCAGCGGTGTGCACCTA
GTGTGAGGTTACGGGGTGGTATAGGACAAGAGGACGGCTTCTCCTGTGCA
AGAAGTATACATACAAGGCCCAGAGCGCGTCAAGGATCCGCGGGAGGAGA
GATAATATAGCTGCTTTTGCGGCTCTGACGAGGCCGGCGAGCTCATGTAC
AAGAAGCAGAGATGCATCGTGTTCGCATTTTTGCCGCTGGAAAACAAGCG
GAGGAATGTAAGGACAGGGGACAGCACCTACTGTGGTGTTGTTTTTCCCC
GCTGTGGCGGCGGTGGCGGGATGAACGGGCGGGGTGCCCGCGCTCGCGGC
TGGACCTGCGGCGGTGGCGGCGTCGGCGGGAGGTAGTGTGCTTCACCCCG
CCATGTTGCAGGAAGAGGTGGCCGGCGCGCCCACTACTTCCAGCTAGATA
CATACAATCGGTCGGTGGTGGAATTCCGCCAAGGACGTAACATACCGCAA
CGGGTTCAGCCAGGCGCTGGTGGTATGGAACGCCCCACGGGCACGTAGAT
TCTGAAGCCTGAGGGATGAAGTTTGCTGAGCAGCGGGTACGGCTAAGAGC
AAATCATGCCCACGCGACGGAGTCAAAGACGAGACGAGTGCGCCCGCTGG
TGGAAATGGAGGGCCTCATGTGCAATACCAGGGGAACGGACAGAGTTGCT
GAACTTGGGAGGACGCGGTTGGGGGGACTCCGCGTCCCGTACCTGCTGGA
TCTCACCCAGCATCGCATCGACATACCAGCCTTTGACCCGCTACACGTGG
CTGCCCCCCAAAATACATTCCTCTCAACATAGTTTCGAAATCAGGCCTCT
AACTCATCACCCCCTACCCCCTCCCCCCTGCCCCGCACCTTTCGTCTTCC
TTTCAACATTGGCTCTGCACACTCACCTATCCATGTACCGAACGAAAAAA
CAGCTGCCGCTGTACGGGGTCACGGCGATCTTGCTGCTGCTTCTCCTGCT
GGCCTCCGCGGGGGTTTCAAGCTTCGCGGACCCCTCGGCGGAGGGGGCCG
AGGTTGTCACCTTGTCCCTGTCCACGTCCCCCCAAGAGTCGGAGTCGTTG
TCGTCTGGTGGCGCGGGGGAGGAGGGAGGTGGGATCGCCGGGAACGGCGG
CGGCGGCGGCGGCGACTCAAGAGCGTGTACCGTCGACGACCTTGTTCCGA
CGCACGGCCACTACGAGGACGGCGGCGGCAGCGACGGCGGCGACGACCTC
TCCGGGATGTGGGACACGAGCAGCATGGTGGCGCCCCCGTTCGACTGCAC
GTGTGGGACCCTGAAAGCCAGGTGCTGCTGCTGCCGTTTGTTGTTGTTCT
GTCTTGTTGGTTTGCTTGTTAGTATCAAGCGCTTTGTGGAGTGCTGCTGC
TGTTCTGCGGTTGGATTGGTTCGGGGAGTGGAAGAGCGGGAGGGGCCCTG
AGAGCCCGGTGCTCGTTTGCTTCTTGTGTGTTTATGGTTAACCTTGTGGA
TTGCTGCTGTTGTTTTGCAGTTGGGTAGGTTCGGGGAGTGGAACAACAAC
AGCAGCAGCAACAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAAT
TAACAACAATGTAATGCCTCTACCCACCCACGCTTGCAGCTACTTCTGCC
CGAACCTGGGCACGGGGGGGTACCCCAAGTGGAACACTAGCGGCGGGTGC
GAGCGAAGACAACGGAGTGCTCTGCAGAACGAGCCCCTGCCGCCCGGCTT
CCGGGTGTTGTTCTACGGGAACTCCCACCTCCGGCAGGTATATTGCCCAA
GCTTGTTTCCGCGAGAAAAAAAAACGCTTTGCGTTGTGTTCAGGCTCGGG
GATCCCGCAGGCAGCCATGAAATGAACACGTTCTCGAGGTTTGAGAACAT
TCAGCTCTCGCTGCCGGCCAGCGCCGACGCCGACGCGCGTGGGCTGGGGA
TGGATGCGATGCGATGCGATGTTCTCGCTTCGTCCATCGTAGATTGCAGG
TGCAGGGATGTAGCGCGTTTGTTTGTTCGTTTGTTTGTCTTGTGTTGGGG
TGATGTTTCTGTCGGTACGTTGACACCTTGTTATAGTCGAAGGGCTCCGC
TGCAGCTGAGCCGCCGAACGGCCGCGCCCAACTGCCTCCTCTGCCCCGAG
TATTCACACCTGCTATGGTAGACGGACAATCACGGTTTTCGGGTCCTCCC
GAGCCATCCAGTCCATCCCTTGAAAACTCCGACGTACTCTGCTGTATCTT
GATATAAACGAAGAACCGGGAAACACACAAGGCGCGAACGGGTCAAACTC
AACTTTCGAGTAATGTACATAAATCCATTCCGCGTACGGAGGCATGAAAA
CTAGGTGTGTTTTTACGGTTACATGGAAGGCGCGCGTGCCTTCTTCCAAG
AAACAAAGGTTCAGATCTTGGCGACATATAAGAAAAGTCGACCAAGAAAA
AAAACTCAGCCGTTGATCCGATGCATACACTAAACTCTTACGTAGACATT
AGCCTCGACCCCAAACTGACGGTTCTTGAACGCGGGCGCTAAAAAGGTGG
TGGAAGGAATCGTCTGCGCGTACTCCTCGTCGATTCGGAGCCGATGCCTC
CGGATGGTAGTGGACCGGGAGAGCTTGGCTCAGGAGGACACATTGGTGGA
CGAGGGCCTCCAGTGCCGGAGCTGCGTCAACTCCCACAAGCTGCGCAGGA
CGCTCCTCGAACACAAGTGCATCTCGGACGAGTCGAAAAAGGAGGCGTGC
AGGTGGGTTTGTTGCTGTTGTTGTTGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12597:58..4337-

>mRNA_Ecto-sp13_S_contig12597.2144.1 ID=mRNA_Ecto-sp13_S_contig12597.2144.1|Name=mRNA_Ecto-sp13_S_contig12597.2144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12597:58..4337- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGTCGAAGGGAGAAGGCAACTTGCTGGCGCGACCATCTCAAGCCAA
GCTGCCGCTGTACGGGGTCACGGCGATCTTGCTGCTGCTTCTCCTGCTGG
CCTCCGCGGGGGTTTCAAGCTTCGCGGACCCCTCGGCGGAGGGGGCCGAG
GTTGTCACCTTGTCCCTGTCCACGTCCCCCCAAGAGTCGGAGTCGTTGTC
GTCTGGTGGCGCGGGGGAGGAGGGAGGTGGGATCGCCGGGAACGGCGGCG
GCGGCGGCGGCGACTCAAGAGCGTGTACCGTCGACGACCTTGTTCCGACG
CACGGCCACTACGAGGACGGCGGCGGCAGCGACGGCGGCGACGACCTCTC
CGGGATGTGGGACACGAGCAGCATGGTGGCGCCCCCGTTCGACTGCACGT
GTGGGACCCTGAAAGCCAGCTACTTCTGCCCGAACCTGGGCACGGGGGGG
TACCCCAAGTGGAACACTAGCGGCGGGTGCGAGCGAAGACAACGGAGTGC
TCTGCAGAACGAGCCCCTGCCGCCCGGCTTCCGGGTGTTGTTCTACGGGA
ACTCCCACCTCCGGCAGGTGGTGGAAGGAATCGTCTGCGCGTACTCCTCG
TCGATTCGGAGCCGATGCCTCCGGATGGTAGTGGACCGGGAGAGCTTGGC
TCAGGAGGACACATTGGTGGACGAGGGCCTCCAGTGCCGGAGCTGCGTCA
ACTCCCACAAGCTGCGCAGGACGCTCCTCGAACACAAGTGCATCTCGGAC
GAGTCGAAAAAGGAGGCGTGCAGGTGGGTTTGTTGCTGTTGTTGTTGGTG
A
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