mRNA_Ecto-sp13_S_contig9769.21420.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9769.21420.1
Unique NamemRNA_Ecto-sp13_S_contig9769.21420.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: A0A6H5L0V2_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V2_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 2.840e-22
Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = 2
Query:  248 NQAFFMRTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHG-------RAQH*DSITCLLPHTEIVDGVLFTESVAYLPFTESATGDSSN 502
            N   FMR QF L +AY+MTINKSQ QTL +IGLD+RSS FAHG       RAQ   ++  LLPH+++VDGV +TE+V Y PFTE+ATG+++N
Sbjct:  230 NGISFMRVQFPLRSAYAMTINKSQGQTLKKIGLDLRSSPFAHGQLYVALTRAQKRSTVMVLLPHSQVVDGVPYTENVVYAPFTEAATGETNN 321          
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: A0A6H5J9C5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.650e-18
Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 2
Query:  248 NQAFFMRTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHG-------RAQH*DSITCLLPHTEIVDGVLFTESVAYLPFTESAT 487
            N   F R QF L TAYSMTINKSQ QTLS+IGLD+RSS FAHG       R+Q+  SI CLLP T I+DG+ +T+++ Y P  ++AT
Sbjct:  367 NGICFTRKQFPLRTAYSMTINKSQGQTLSKIGLDLRSSPFAHGQLYVALSRSQNRTSIMCLLPDTHIIDGIPYTDNIVYPPLIQAAT 453          
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: A0A6H5KXS1_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS1_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 8.730e-7
Identity = 33/61 (54.10%), Postives = 37/61 (60.66%), Query Frame = 2
Query:  248 NQAFFMRTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHG-------RAQH*DSITCL 409
            N   F R Q  L   Y++TINKSQ QTLS+IGLD+RS VF HG       RAQ   SI CL
Sbjct:  208 NGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCL 268          
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: A0A6H5JNR7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR7_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.100e-6
Identity = 33/61 (54.10%), Postives = 37/61 (60.66%), Query Frame = 2
Query:  248 NQAFFMRTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHG-------RAQH*DSITCL 409
            N   F R Q  L   Y++TINKSQ QTLS+IGLD+RS VF HG       RAQ   SI CL
Sbjct:  317 NGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCL 377          
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: A0A6H5KLU2_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU2_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.210e-6
Identity = 33/61 (54.10%), Postives = 37/61 (60.66%), Query Frame = 2
Query:  248 NQAFFMRTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHG-------RAQH*DSITCL 409
            N   F R Q  L   Y++TINKSQ QTLS+IGLD+RS VF HG       RAQ   SI CL
Sbjct:  240 NGIAFSRLQLPLRVRYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCL 300          
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.240e-6
Identity = 33/61 (54.10%), Postives = 37/61 (60.66%), Query Frame = 2
Query:  248 NQAFFMRTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHG-------RAQH*DSITCL 409
            N   F R Q  L   Y++TINKSQ QTLS+IGLD+RS VF HG       RAQ   SI CL
Sbjct:  694 NGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCL 754          
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: UPI001ED8778A (uncharacterized protein LOC124173260 n=3 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8778A)

HSP 1 Score: 57.4 bits (137), Expect = 1.790e-6
Identity = 26/74 (35.14%), Postives = 44/74 (59.46%), Query Frame = 2
Query:  263 MRTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHG-------RAQH*DSITCLLPHTEIVDGVLFTESVAY 463
            +R QF L  AYSMT++KSQ QT+  +G+D+R+  F HG       R +    I  L+P  +++DG  + +++ +
Sbjct: 1614 LRRQFPLALAYSMTVHKSQGQTIDFVGVDLRTDCFTHGQLYVLLSRVRRPQDIVVLVPQNKVIDGTAYAKNIVF 1687          
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: A0A2G3AQD7_CAPCH (ATP-dependent DNA helicase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQD7_CAPCH)

HSP 1 Score: 55.5 bits (132), Expect = 7.360e-6
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 2
Query:  266 RTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHG-------RAQH*DSITCLLPHTEIVDGVLFTESVAY 463
            R QF L  AY +T NKSQ QTL+R+G+D+RS VF+HG       R +    +  L+P   +++ V  T +V Y
Sbjct:  541 RRQFPLRLAYGLTKNKSQGQTLNRVGVDLRSDVFSHGQLYVALGRVRKSCDLKVLVPQQRVINNVPHTHNVVY 613          
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: A0A0C3P434_PISTI (Herpes_Helicase domain-containing protein n=1 Tax=Pisolithus tinctorius Marx 270 TaxID=870435 RepID=A0A0C3P434_PISTI)

HSP 1 Score: 51.6 bits (122), Expect = 8.450e-6
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 2
Query:  272 QFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHGR 379
            QF +  AYSMTINKSQ QT+  +GLD+R+SVF+HG+
Sbjct:   18 QFPVHLAYSMTINKSQGQTVQHVGLDLRTSVFSHGQ 53          
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: UPI00125D9E0B (ATP-dependent DNA helicase PIF1-like n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125D9E0B)

HSP 1 Score: 52.8 bits (125), Expect = 2.520e-5
Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 2
Query:  260 FMRTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHGR 379
            F R QF L  +Y+MTINKSQ QTLSR+GL ++ SVF HG+
Sbjct:  118 FQRKQFPLMLSYAMTINKSQGQTLSRVGLLLKKSVFVHGQ 157          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5L0V2_9PHAE2.840e-2257.61ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5J9C5_9PHAE3.650e-1856.32ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KXS1_9PHAE8.730e-754.10ATP-dependent DNA helicase (Fragment) n=1 Tax=Ecto... [more]
A0A6H5JNR7_9PHAE1.100e-654.10ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KLU2_9PHAE1.210e-654.10ATP-dependent DNA helicase (Fragment) n=1 Tax=Ecto... [more]
A0A6H5JZJ6_9PHAE1.240e-654.10ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
UPI001ED8778A1.790e-635.14uncharacterized protein LOC124173260 n=3 Tax=Ischn... [more]
A0A2G3AQD7_CAPCH7.360e-641.10ATP-dependent DNA helicase n=1 Tax=Capsicum chinen... [more]
A0A0C3P434_PISTI8.450e-663.89Herpes_Helicase domain-containing protein n=1 Tax=... [more]
UPI00125D9E0B2.520e-562.50ATP-dependent DNA helicase PIF1-like n=1 Tax=Ipomo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9769contigEcto-sp13_S_contig9769:3844..4355 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size512
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464240.9095294-CDS-Ecto-sp13_S_contig9769:3843..41551681464240.9095294-CDS-Ecto-sp13_S_contig9769:3843..4155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9769 3844..4155 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464240.9233434-UTR-Ecto-sp13_S_contig9769:4155..43551681464240.9233434-UTR-Ecto-sp13_S_contig9769:4155..4355Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9769 4156..4355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9769.21420.1prot_Ecto-sp13_S_contig9769.21420.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9769 3844..4155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9769.21420.1

>prot_Ecto-sp13_S_contig9769.21420.1 ID=prot_Ecto-sp13_S_contig9769.21420.1|Name=mRNA_Ecto-sp13_S_contig9769.21420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
MPVGVPPHELTLETCSGAVLLSDDSTYVISTFRRAYVANGQKGILNAFSP
NSRVFQIELPPDDALHQYCLSSFLEIASKQGGKSGILHAYAILTWYGLLH
DHK*
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mRNA from alignment at Ecto-sp13_S_contig9769:3844..4355+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9769.21420.1 ID=mRNA_Ecto-sp13_S_contig9769.21420.1|Name=mRNA_Ecto-sp13_S_contig9769.21420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=512bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9769:3844..4355+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGTTGGCGTCCCGCCCCACGAGCTAACCCTCGAGACCTGTTCGGG TGCCGTACTTCTTAGCGATGACAGTACGTACGTAATCTCAACGTTTCGGA GGGCCTATGTAGCGAACGGTCAAAAAGGTATTCTTAACGCGTTTTCACCG AACAGCCGTGTCTTCCAGATTGAGCTTCCACCTGACGACGCACTCCATCA GTATTGTCTTTCTTCATTCCTCGAAATAGCTTCGAAGCAAGGTGGTAAAT CAGGCATTCTTCATGCGTACGCAATTCTCACTTGGTACGGCCTACTCCAT GACCATAAATAAAAGCCAAAGCCAGACTCTTTCCCGAATCGGCCTAGACG TAAGATCCTCGGTATTCGCTCATGGCAGAGCTCAGCACTGAGACTCAATC ACGTGCCTGCTCCCTCACACAGAAATCGTCGATGGTGTCCTCTTCACCGA AAGTGTCGCATATCTCCCTTTTACCGAATCTGCTACCGGTGACTCATCAA ACTCCACCTCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9769:3844..4355+

>mRNA_Ecto-sp13_S_contig9769.21420.1 ID=mRNA_Ecto-sp13_S_contig9769.21420.1|Name=mRNA_Ecto-sp13_S_contig9769.21420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9769:3844..4355+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGTTGGCGTCCCGCCCCACGAGCTAACCCTCGAGACCTGTTCGGG
TGCCGTACTTCTTAGCGATGACAGTACGTACGTAATCTCAACGTTTCGGA
GGGCCTATGTAGCGAACGGTCAAAAAGGTATTCTTAACGCGTTTTCACCG
AACAGCCGTGTCTTCCAGATTGAGCTTCCACCTGACGACGCACTCCATCA
GTATTGTCTTTCTTCATTCCTCGAAATAGCTTCGAAGCAAGGTGGTAAAT
CAGGCATTCTTCATGCGTACGCAATTCTCACTTGGTACGGCCTACTCCAT
GACCATAAATAA
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