mRNA_Ecto-sp13_S_contig9769.21420.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: A0A6H5L0V2_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V2_9PHAE) HSP 1 Score: 101 bits (251), Expect = 2.840e-22 Identity = 53/92 (57.61%), Postives = 68/92 (73.91%), Query Frame = 2
Query: 248 NQAFFMRTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHG-------RAQH*DSITCLLPHTEIVDGVLFTESVAYLPFTESATGDSSN 502
N FMR QF L +AY+MTINKSQ QTL +IGLD+RSS FAHG RAQ ++ LLPH+++VDGV +TE+V Y PFTE+ATG+++N
Sbjct: 230 NGISFMRVQFPLRSAYAMTINKSQGQTLKKIGLDLRSSPFAHGQLYVALTRAQKRSTVMVLLPHSQVVDGVPYTENVVYAPFTEAATGETNN 321
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: A0A6H5J9C5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C5_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 3.650e-18 Identity = 49/87 (56.32%), Postives = 61/87 (70.11%), Query Frame = 2
Query: 248 NQAFFMRTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHG-------RAQH*DSITCLLPHTEIVDGVLFTESVAYLPFTESAT 487
N F R QF L TAYSMTINKSQ QTLS+IGLD+RSS FAHG R+Q+ SI CLLP T I+DG+ +T+++ Y P ++AT
Sbjct: 367 NGICFTRKQFPLRTAYSMTINKSQGQTLSKIGLDLRSSPFAHGQLYVALSRSQNRTSIMCLLPDTHIIDGIPYTDNIVYPPLIQAAT 453
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: A0A6H5KXS1_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS1_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 8.730e-7 Identity = 33/61 (54.10%), Postives = 37/61 (60.66%), Query Frame = 2
Query: 248 NQAFFMRTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHG-------RAQH*DSITCL 409
N F R Q L Y++TINKSQ QTLS+IGLD+RS VF HG RAQ SI CL
Sbjct: 208 NGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCL 268
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: A0A6H5JNR7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR7_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 1.100e-6 Identity = 33/61 (54.10%), Postives = 37/61 (60.66%), Query Frame = 2
Query: 248 NQAFFMRTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHG-------RAQH*DSITCL 409
N F R Q L Y++TINKSQ QTLS+IGLD+RS VF HG RAQ SI CL
Sbjct: 317 NGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCL 377
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: A0A6H5KLU2_9PHAE (ATP-dependent DNA helicase (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLU2_9PHAE) HSP 1 Score: 57.4 bits (137), Expect = 1.210e-6 Identity = 33/61 (54.10%), Postives = 37/61 (60.66%), Query Frame = 2
Query: 248 NQAFFMRTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHG-------RAQH*DSITCL 409
N F R Q L Y++TINKSQ QTLS+IGLD+RS VF HG RAQ SI CL
Sbjct: 240 NGIAFSRLQLPLRVRYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCL 300
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE) HSP 1 Score: 57.8 bits (138), Expect = 1.240e-6 Identity = 33/61 (54.10%), Postives = 37/61 (60.66%), Query Frame = 2
Query: 248 NQAFFMRTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHG-------RAQH*DSITCL 409
N F R Q L Y++TINKSQ QTLS+IGLD+RS VF HG RAQ SI CL
Sbjct: 694 NGIAFSRLQLPLRVCYALTINKSQGQTLSKIGLDLRSDVFTHGQLYVALSRAQKRSSIMCL 754
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: UPI001ED8778A (uncharacterized protein LOC124173260 n=3 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8778A) HSP 1 Score: 57.4 bits (137), Expect = 1.790e-6 Identity = 26/74 (35.14%), Postives = 44/74 (59.46%), Query Frame = 2
Query: 263 MRTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHG-------RAQH*DSITCLLPHTEIVDGVLFTESVAY 463
+R QF L AYSMT++KSQ QT+ +G+D+R+ F HG R + I L+P +++DG + +++ +
Sbjct: 1614 LRRQFPLALAYSMTVHKSQGQTIDFVGVDLRTDCFTHGQLYVLLSRVRRPQDIVVLVPQNKVIDGTAYAKNIVF 1687
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: A0A2G3AQD7_CAPCH (ATP-dependent DNA helicase n=1 Tax=Capsicum chinense TaxID=80379 RepID=A0A2G3AQD7_CAPCH) HSP 1 Score: 55.5 bits (132), Expect = 7.360e-6 Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 2
Query: 266 RTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHG-------RAQH*DSITCLLPHTEIVDGVLFTESVAY 463
R QF L AY +T NKSQ QTL+R+G+D+RS VF+HG R + + L+P +++ V T +V Y
Sbjct: 541 RRQFPLRLAYGLTKNKSQGQTLNRVGVDLRSDVFSHGQLYVALGRVRKSCDLKVLVPQQRVINNVPHTHNVVY 613
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: A0A0C3P434_PISTI (Herpes_Helicase domain-containing protein n=1 Tax=Pisolithus tinctorius Marx 270 TaxID=870435 RepID=A0A0C3P434_PISTI) HSP 1 Score: 51.6 bits (122), Expect = 8.450e-6 Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 2
Query: 272 QFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHGR 379
QF + AYSMTINKSQ QT+ +GLD+R+SVF+HG+
Sbjct: 18 QFPVHLAYSMTINKSQGQTVQHVGLDLRTSVFSHGQ 53
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Match: UPI00125D9E0B (ATP-dependent DNA helicase PIF1-like n=1 Tax=Ipomoea triloba TaxID=35885 RepID=UPI00125D9E0B) HSP 1 Score: 52.8 bits (125), Expect = 2.520e-5 Identity = 25/40 (62.50%), Postives = 31/40 (77.50%), Query Frame = 2
Query: 260 FMRTQFSLGTAYSMTINKSQSQTLSRIGLDVRSSVFAHGR 379
F R QF L +Y+MTINKSQ QTLSR+GL ++ SVF HG+
Sbjct: 118 FQRKQFPLMLSYAMTINKSQGQTLSRVGLLLKKSVFVHGQ 157 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9769.21420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9769.21420.1 >prot_Ecto-sp13_S_contig9769.21420.1 ID=prot_Ecto-sp13_S_contig9769.21420.1|Name=mRNA_Ecto-sp13_S_contig9769.21420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp MPVGVPPHELTLETCSGAVLLSDDSTYVISTFRRAYVANGQKGILNAFSPback to top mRNA from alignment at Ecto-sp13_S_contig9769:3844..4355+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9769.21420.1 ID=mRNA_Ecto-sp13_S_contig9769.21420.1|Name=mRNA_Ecto-sp13_S_contig9769.21420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=512bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9769:3844..4355+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9769:3844..4355+ >mRNA_Ecto-sp13_S_contig9769.21420.1 ID=mRNA_Ecto-sp13_S_contig9769.21420.1|Name=mRNA_Ecto-sp13_S_contig9769.21420.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9769:3844..4355+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |