Homology
BLAST of mRNA_Ecto-sp13_S_contig10192.214.1 vs. uniprot
Match:
D8LCZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ4_ECTSI)
HSP 1 Score: 434 bits (1117), Expect = 1.260e-149
Identity = 238/273 (87.18%), Postives = 243/273 (89.01%), Query Frame = 1
Query: 94 QKRVSAGEDSARSEASGAFFPAAFHHPADSCQCCQTNGDDGGGSAEPERGLQQVSSLDNADSSTKAVGYTTTSMGPESTEEREITPISTTT-AAEDLVERNSDEKRGTGGRAPECAGPPIDSLVSFSRYLALLVASAQEEHTPSANECERSALAELLRASDDGSDRGGSGVVNTHHPGNSNTVHQNQSRAAPAPGPSTPVGSPGSPRPLRYWARRIHRFLLSVRELRTVPYRDLASLEEIMLEARRGGRGGRG-RSASPPRALVLGSPPKAPV 906
+KRVSAGE SARSEA GAFFPAAFHHP DSCQ C +NGDDGGGSA+PERGLQQ SS DNA SSTKAVGYTTTSMGP STEE +ITPISTTT AAE LVERNSDEK GTGGRAPECAGPP+ SLV FSRYLALLVASAQEEHTPSANECERSALAELLRASDDGSD G SGVVNT HPG SN VHQNQS AAPAPGPSTPVGSPGSPRPLRYWARRIHRFLLSVRELRTVP RDLASLEEIMLEARRG R ASPPRALVLGSPPKAPV
Sbjct: 121 RKRVSAGEGSARSEAFGAFFPAAFHHPKDSCQGCDSNGDDGGGSAKPERGLQQASSFDNATSSTKAVGYTTTSMGPRSTEESKITPISTTTTAAEGLVERNSDEKGGTGGRAPECAGPPMGSLVRFSRYLALLVASAQEEHTPSANECERSALAELLRASDDGSDSGSSGVVNTRHPGTSNIVHQNQSPAAPAPGPSTPVGSPGSPRPLRYWARRIHRFLLSVRELRTVPDRDLASLEEIMLEARRGXXXXXXXRRASPPRALVLGSPPKAPV 393
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10192.214.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 1
0 1 Expect = 1.26e-149 / Id = 87.18 Sequence D8LCZ4_ECTSI
Match Name E-value Identity Description
D8LCZ4_ECTSI 1.260e-149 87.18 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Stop 1 Start 1 Model size 958 Hectar predicted targeting category other localisation Exons 3 Ec32 ortholog description expressed unknown protein Ec32 ortholog Ec-01_001650.1 Cds size 597
Relationships
The following UTR feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462513.7009885-UTR-Ecto-sp13_S_contig10192:3875..3924 1681462513.7009885-UTR-Ecto-sp13_S_contig10192:3875..3924 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10192 3876..3924 - 1681462513.7294693-UTR-Ecto-sp13_S_contig10192:4948..5171 1681462513.7294693-UTR-Ecto-sp13_S_contig10192:4948..5171 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10192 4949..5171 - 1681462513.7391026-UTR-Ecto-sp13_S_contig10192:5559..5648 1681462513.7391026-UTR-Ecto-sp13_S_contig10192:5559..5648 Ectocarpus species13 EcNAP12_S_4_19m UTR Ecto-sp13_S_contig10192 5560..5648 -
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1681462513.7121797-CDS-Ecto-sp13_S_contig10192:3924..4264 1681462513.7121797-CDS-Ecto-sp13_S_contig10192:3924..4264 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10192 3925..4264 - 1681462513.7204688-CDS-Ecto-sp13_S_contig10192:4691..4948 1681462513.7204688-CDS-Ecto-sp13_S_contig10192:4691..4948 Ectocarpus species13 EcNAP12_S_4_19m CDS Ecto-sp13_S_contig10192 4692..4948 -
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10192.214.1
>prot_Ecto-sp13_S_contig10192.214.1 ID=prot_Ecto-sp13_S_contig10192.214.1|Name=mRNA_Ecto-sp13_S_contig10192.214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=199bp
MGPESTEEREITPISTTTAAEDLVERNSDEKRGTGGRAPECAGPPIDSLV back to top mRNA from alignment at Ecto-sp13_S_contig10192:3876..5648-
Legend: UTR polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10192.214.1 ID=mRNA_Ecto-sp13_S_contig10192.214.1|Name=mRNA_Ecto-sp13_S_contig10192.214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1773bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10192:3876..5648- (Ectocarpus species13 EcNAP12_S_4_19m)GGCGGCGTCGTTGGAAGCCCGGACCTACCGGAGCGTCTGCCAGCAGCTTA
CCCCGCTTGGTTGTCTATCCTTTTGGAGTGCTACCGAAT GTAAGAGTGCT
CCCTGGACTGACGCAAGGAAAGAAAAAAGAGGACAAAAAGCGTGGTCTAG
AGAAGCATCAAGTTTCTGGTTGAGAGAACCTGGTTTGTCTCGAGCGGACA
TCTGCAGCAGGCGGCGGTACGATGCGAATAACACCTGAAACCCACCACGA
AGAAATGTTATTGCCGTTGTTGTCTTGACTGCAAAAACCGTTCCGGTATC
GCCTCAGAAACTTCCAAGCGGATTCAACTGATTCATGTTTGGACGAACAC
ATGATCTATTTTTCTGGACGACGAAGTCGTCGCAACAGGGATCGACTGGG
CGACTAGACGGAGGGGTGCCCCGTCCCGGAAAAAAAAATCTCTTTGCTTT
GCCTTCCCTTTTTGTGAACACACGCAGCGAGCAGAAAAGGGTGTCCGCGG
GCGAGGATTCCGCACGATCGGAAGCCTCTGGCGCCTTCTTCCCGGCTGCT
TTTCACCACCCGGCAGACAGCTGTCAGTGCTGCCAAACTAACGGCGACGA
CGGAGGGGGCAGTGCAGAACCCGAGCGGGGCTTGCAGCAAGTCTCTTCCT
TGGACAACGCGGACAGCAGCACCAAGGCCGTCGGCTACACGACGACTTCC
ATGGGGCCTGAAAGCACGGAGGAGAGAGAAATAACACCGATCTCGACAAC
GACAGCAGCTGAAGATTTAGTTGAACGAAACTCGGACGAAAAACGGGGCA
CCGGCGGCCGCGCTCCCGAGTGCGCGGGGCCTCCCATCGACAGCTTGGTC
AGCTTCAGCCGCTATTTGGCGTTGCTGGTCGCATCGGCACAGGAGGAACA
TACTCCATCCGCGAATGAGTGCGAGAGGTCGGCGCTGGCGGAGCTTCTCC
GAGCGAG GTCAGTCCATTACCGCGAACGACGCGCGAGCGGAACGTGTGTA
TGAACGATTGACTGTCGGCGTGTTAATACGACCTCTTCCGCGATCCTTTT
TTTGGCTTCTCTTTTCTTGCGAAAAGGGAGTAACGTGACCAAGTAAACCT
TGTGAAAGCAATGACCGCTCCCCTTTATGTTCGGTCTTCTTCTGATCCCA
AAACGCGGCCTCTCGTCACCAACGCTCCCTCAGCCCGCCCATATTTTCTC
ATGGTTTTGTGCTCGGCGAAAGGCCTGCAAGGTTGGACATGACTGCATGA
ATGTTGCTTTGTTTCGAATGGATGCGGCAATACGTATCTCTTGTCTGAAT
TACAGCTCTGCGTCAGCAGTACACATGTAATGTGTGCATCGATAATGTTT
GTTATCGCTTTCTGTTGAAATTGATTTACCCCAGTGATGACGGGTCTGAC
CGTGGCGGATCGGGCGTCGTCAACACACATCATCCCGGCAACAGCAACAC
TGTCCATCAAAACCAATCCCGAGCAGCGCCGGCACCGGGTCCATCAACAC
CAGTGGGGTCGCCGGGGTCACCGCGACCGTTACGGTACTGGGCGCGGAGG
ATCCATCGGTTTCTGCTTAGCGTCCGGGAGCTGAGGACGGTGCCCTACCG
GGACCTCGCTAGCCTCGAGGAGATAATGTTAGAGGCGCGGAGAGGCGGAC
GTGGTGGAAGGGGGCGAAGTGCGTCTCCCCCTCGGGCGTTGGTGCTAGGT
TCCCCGCCAAAGGCCCCTGTGTAG AGGGCCAACGGGTTGAATCGACACGA
GTCACGACGTTGGACAAGGGCGG back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10192:3876..5648-
>mRNA_Ecto-sp13_S_contig10192.214.1 ID=mRNA_Ecto-sp13_S_contig10192.214.1|Name=mRNA_Ecto-sp13_S_contig10192.214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10192:3876..5648- (Ectocarpus species13 EcNAP12_S_4_19m) back to top