mRNA_Ecto-sp13_S_contig10192.214.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10192.214.1
Unique NamemRNA_Ecto-sp13_S_contig10192.214.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10192.214.1 vs. uniprot
Match: D8LCZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ4_ECTSI)

HSP 1 Score: 434 bits (1117), Expect = 1.260e-149
Identity = 238/273 (87.18%), Postives = 243/273 (89.01%), Query Frame = 1 
Query:   94 QKRVSAGEDSARSEASGAFFPAAFHHPADSCQCCQTNGDDGGGSAEPERGLQQVSSLDNADSSTKAVGYTTTSMGPESTEEREITPISTTT-AAEDLVERNSDEKRGTGGRAPECAGPPIDSLVSFSRYLALLVASAQEEHTPSANECERSALAELLRASDDGSDRGGSGVVNTHHPGNSNTVHQNQSRAAPAPGPSTPVGSPGSPRPLRYWARRIHRFLLSVRELRTVPYRDLASLEEIMLEARRGGRGGRG-RSASPPRALVLGSPPKAPV 906
            +KRVSAGE SARSEA GAFFPAAFHHP DSCQ C +NGDDGGGSA+PERGLQQ SS DNA SSTKAVGYTTTSMGP STEE +ITPISTTT AAE LVERNSDEK GTGGRAPECAGPP+ SLV FSRYLALLVASAQEEHTPSANECERSALAELLRASDDGSD G SGVVNT HPG SN VHQNQS AAPAPGPSTPVGSPGSPRPLRYWARRIHRFLLSVRELRTVP RDLASLEEIMLEARRG       R ASPPRALVLGSPPKAPV
Sbjct:  121 RKRVSAGEGSARSEAFGAFFPAAFHHPKDSCQGCDSNGDDGGGSAKPERGLQQASSFDNATSSTKAVGYTTTSMGPRSTEESKITPISTTTTAAEGLVERNSDEKGGTGGRAPECAGPPMGSLVRFSRYLALLVASAQEEHTPSANECERSALAELLRASDDGSDSGSSGVVNTRHPGTSNIVHQNQSPAAPAPGPSTPVGSPGSPRPLRYWARRIHRFLLSVRELRTVPDRDLASLEEIMLEARRGXXXXXXXRRASPPRALVLGSPPKAPV 393
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10192.214.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCZ4_ECTSI1.260e-14987.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10192contigEcto-sp13_S_contig10192:3876..5648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size958
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_001650.1
Cds size597
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462513.7009885-UTR-Ecto-sp13_S_contig10192:3875..39241681462513.7009885-UTR-Ecto-sp13_S_contig10192:3875..3924Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10192 3876..3924 -
1681462513.7294693-UTR-Ecto-sp13_S_contig10192:4948..51711681462513.7294693-UTR-Ecto-sp13_S_contig10192:4948..5171Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10192 4949..5171 -
1681462513.7391026-UTR-Ecto-sp13_S_contig10192:5559..56481681462513.7391026-UTR-Ecto-sp13_S_contig10192:5559..5648Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10192 5560..5648 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462513.7121797-CDS-Ecto-sp13_S_contig10192:3924..42641681462513.7121797-CDS-Ecto-sp13_S_contig10192:3924..4264Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10192 3925..4264 -
1681462513.7204688-CDS-Ecto-sp13_S_contig10192:4691..49481681462513.7204688-CDS-Ecto-sp13_S_contig10192:4691..4948Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10192 4692..4948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10192.214.1prot_Ecto-sp13_S_contig10192.214.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10192 3925..4948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10192.214.1

>prot_Ecto-sp13_S_contig10192.214.1 ID=prot_Ecto-sp13_S_contig10192.214.1|Name=mRNA_Ecto-sp13_S_contig10192.214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=199bp
MGPESTEEREITPISTTTAAEDLVERNSDEKRGTGGRAPECAGPPIDSLV
SFSRYLALLVASAQEEHTPSANECERSALAELLRASDDGSDRGGSGVVNT
HHPGNSNTVHQNQSRAAPAPGPSTPVGSPGSPRPLRYWARRIHRFLLSVR
ELRTVPYRDLASLEEIMLEARRGGRGGRGRSASPPRALVLGSPPKAPV*
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mRNA from alignment at Ecto-sp13_S_contig10192:3876..5648-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10192.214.1 ID=mRNA_Ecto-sp13_S_contig10192.214.1|Name=mRNA_Ecto-sp13_S_contig10192.214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1773bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10192:3876..5648- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGGCGTCGTTGGAAGCCCGGACCTACCGGAGCGTCTGCCAGCAGCTTA
CCCCGCTTGGTTGTCTATCCTTTTGGAGTGCTACCGAATGTAAGAGTGCT
CCCTGGACTGACGCAAGGAAAGAAAAAAGAGGACAAAAAGCGTGGTCTAG
AGAAGCATCAAGTTTCTGGTTGAGAGAACCTGGTTTGTCTCGAGCGGACA
TCTGCAGCAGGCGGCGGTACGATGCGAATAACACCTGAAACCCACCACGA
AGAAATGTTATTGCCGTTGTTGTCTTGACTGCAAAAACCGTTCCGGTATC
GCCTCAGAAACTTCCAAGCGGATTCAACTGATTCATGTTTGGACGAACAC
ATGATCTATTTTTCTGGACGACGAAGTCGTCGCAACAGGGATCGACTGGG
CGACTAGACGGAGGGGTGCCCCGTCCCGGAAAAAAAAATCTCTTTGCTTT
GCCTTCCCTTTTTGTGAACACACGCAGCGAGCAGAAAAGGGTGTCCGCGG
GCGAGGATTCCGCACGATCGGAAGCCTCTGGCGCCTTCTTCCCGGCTGCT
TTTCACCACCCGGCAGACAGCTGTCAGTGCTGCCAAACTAACGGCGACGA
CGGAGGGGGCAGTGCAGAACCCGAGCGGGGCTTGCAGCAAGTCTCTTCCT
TGGACAACGCGGACAGCAGCACCAAGGCCGTCGGCTACACGACGACTTCC
ATGGGGCCTGAAAGCACGGAGGAGAGAGAAATAACACCGATCTCGACAAC
GACAGCAGCTGAAGATTTAGTTGAACGAAACTCGGACGAAAAACGGGGCA
CCGGCGGCCGCGCTCCCGAGTGCGCGGGGCCTCCCATCGACAGCTTGGTC
AGCTTCAGCCGCTATTTGGCGTTGCTGGTCGCATCGGCACAGGAGGAACA
TACTCCATCCGCGAATGAGTGCGAGAGGTCGGCGCTGGCGGAGCTTCTCC
GAGCGAGGTCAGTCCATTACCGCGAACGACGCGCGAGCGGAACGTGTGTA
TGAACGATTGACTGTCGGCGTGTTAATACGACCTCTTCCGCGATCCTTTT
TTTGGCTTCTCTTTTCTTGCGAAAAGGGAGTAACGTGACCAAGTAAACCT
TGTGAAAGCAATGACCGCTCCCCTTTATGTTCGGTCTTCTTCTGATCCCA
AAACGCGGCCTCTCGTCACCAACGCTCCCTCAGCCCGCCCATATTTTCTC
ATGGTTTTGTGCTCGGCGAAAGGCCTGCAAGGTTGGACATGACTGCATGA
ATGTTGCTTTGTTTCGAATGGATGCGGCAATACGTATCTCTTGTCTGAAT
TACAGCTCTGCGTCAGCAGTACACATGTAATGTGTGCATCGATAATGTTT
GTTATCGCTTTCTGTTGAAATTGATTTACCCCAGTGATGACGGGTCTGAC
CGTGGCGGATCGGGCGTCGTCAACACACATCATCCCGGCAACAGCAACAC
TGTCCATCAAAACCAATCCCGAGCAGCGCCGGCACCGGGTCCATCAACAC
CAGTGGGGTCGCCGGGGTCACCGCGACCGTTACGGTACTGGGCGCGGAGG
ATCCATCGGTTTCTGCTTAGCGTCCGGGAGCTGAGGACGGTGCCCTACCG
GGACCTCGCTAGCCTCGAGGAGATAATGTTAGAGGCGCGGAGAGGCGGAC
GTGGTGGAAGGGGGCGAAGTGCGTCTCCCCCTCGGGCGTTGGTGCTAGGT
TCCCCGCCAAAGGCCCCTGTGTAGAGGGCCAACGGGTTGAATCGACACGA
GTCACGACGTTGGACAAGGGCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10192:3876..5648-

>mRNA_Ecto-sp13_S_contig10192.214.1 ID=mRNA_Ecto-sp13_S_contig10192.214.1|Name=mRNA_Ecto-sp13_S_contig10192.214.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10192:3876..5648- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGCCTGAAAGCACGGAGGAGAGAGAAATAACACCGATCTCGACAAC
GACAGCAGCTGAAGATTTAGTTGAACGAAACTCGGACGAAAAACGGGGCA
CCGGCGGCCGCGCTCCCGAGTGCGCGGGGCCTCCCATCGACAGCTTGGTC
AGCTTCAGCCGCTATTTGGCGTTGCTGGTCGCATCGGCACAGGAGGAACA
TACTCCATCCGCGAATGAGTGCGAGAGGTCGGCGCTGGCGGAGCTTCTCC
GAGCGAGTGATGACGGGTCTGACCGTGGCGGATCGGGCGTCGTCAACACA
CATCATCCCGGCAACAGCAACACTGTCCATCAAAACCAATCCCGAGCAGC
GCCGGCACCGGGTCCATCAACACCAGTGGGGTCGCCGGGGTCACCGCGAC
CGTTACGGTACTGGGCGCGGAGGATCCATCGGTTTCTGCTTAGCGTCCGG
GAGCTGAGGACGGTGCCCTACCGGGACCTCGCTAGCCTCGAGGAGATAAT
GTTAGAGGCGCGGAGAGGCGGACGTGGTGGAAGGGGGCGAAGTGCGTCTC
CCCCTCGGGCGTTGGTGCTAGGTTCCCCGCCAAAGGCCCCTGTGTAG
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