mRNA_Ecto-sp13_S_contig9702.21338.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9702.21338.1
Unique NamemRNA_Ecto-sp13_S_contig9702.21338.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9702.21338.1 vs. uniprot
Match: D7FRN3_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRN3_ECTSI)

HSP 1 Score: 740 bits (1910), Expect = 1.490e-261
Identity = 386/426 (90.61%), Postives = 397/426 (93.19%), Query Frame = 1 
Query:  559 MVRLPNTATFGELLACAREKRHGVLELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHVGLAVVVSFPRGSQRSLSLTMGPGATIGDVNQRICVDHGIIPSRQGLTICGGAQRLGANVTLKECCVSGVPVGGFSSKGWGELRLELHVTECTMRNSLQVAMKDSSQGWSASEFRGAVGVGLPSRGTDALRSPSQSSHLTPSPPAAATYVPQNNEGSSLTTASSLLRSGASTVEIRPAIEHESGPYSTVMFALSPSGRALTLTMVPTATVLDAKTQVAAFEGVSPCRQRLLWRGVLMEPDGALLRRLGARSGDTLIVGYRVGPCAPPEVMRPVVELEGNAAGDDDALTADAAISPIHSPSHHRLCGAQRGTLDNSGSSNTDGDIPEQGTSGVEAAATVADGDQNNDVIAPEXXXXXXXXXXSSMGVDE 1836
            MVRLPNTATFGELLA AREKRHG LELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLH+GLAVVVSFPRGSQRSLSLTMGPGATIGDV QRICVDHGI+PSRQGL ICGGAQRLGANVTLKECCV GVPVGGFS KGWGELRLELHV ECT RNSLQVAM+DSSQGWSASEFRGAVGVGLPSRGTD LRSPSQ SHLTPSPP AATYVPQNNEGSSLTT SSL R+GASTVE RP +EH SGPYSTVMFALSPSGRALTLTM PTATVLDAKTQVAAFEGVSPCRQRLLWRG+LMEPDGALLRRLGAR GDTLIVGYRVGP APPEVMRPVVELEGNAAGDDDA  ADAAISP HSPSHHR CGAQRGT+D+SGSSN DG IPEQGTSGVE+AA VADGD+NNDV+AP XXXXXXXXXXS M VDE
Sbjct:    1 MVRLPNTATFGELLARAREKRHGALELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHIGLAVVVSFPRGSQRSLSLTMGPGATIGDVKQRICVDHGIVPSRQGLMICGGAQRLGANVTLKECCVWGVPVGGFSPKGWGELRLELHVAECTTRNSLQVAMRDSSQGWSASEFRGAVGVGLPSRGTDVLRSPSQPSHLTPSPPVAATYVPQNNEGSSLTTPSSLHRNGASTVETRPTVEHGSGPYSTVMFALSPSGRALTLTMAPTATVLDAKTQVAAFEGVSPCRQRLLWRGILMEPDGALLRRLGARGGDTLIVGYRVGPGAPPEVMRPVVELEGNAAGDDDAQNADAAISPTHSPSHHRPCGAQRGTVDSSGSSNIDGGIPEQGTSGVESAAAVADGDENNDVVAPXXXXXXXXXXXSGMDVDE 426
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9702.21338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRN3_ECTSI1.490e-26190.61Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9702contigEcto-sp13_S_contig9702:2704..6201 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1836
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionUbiquitin-like
Ec32 orthologEc-12_002410.1
Cds size1683
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9702.21338.1prot_Ecto-sp13_S_contig9702.21338.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9702 2857..6201 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464234.1502488-UTR-Ecto-sp13_S_contig9702:2703..28561681464234.1502488-UTR-Ecto-sp13_S_contig9702:2703..2856Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9702 2704..2856 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464234.1654592-CDS-Ecto-sp13_S_contig9702:2856..29571681464234.1654592-CDS-Ecto-sp13_S_contig9702:2856..2957Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9702 2857..2957 +
1681464234.1798773-CDS-Ecto-sp13_S_contig9702:3237..33201681464234.1798773-CDS-Ecto-sp13_S_contig9702:3237..3320Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9702 3238..3320 +
1681464234.1896596-CDS-Ecto-sp13_S_contig9702:3981..41211681464234.1896596-CDS-Ecto-sp13_S_contig9702:3981..4121Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9702 3982..4121 +
1681464234.2059653-CDS-Ecto-sp13_S_contig9702:4358..47091681464234.2059653-CDS-Ecto-sp13_S_contig9702:4358..4709Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9702 4359..4709 +
1681464234.2192118-CDS-Ecto-sp13_S_contig9702:4934..51351681464234.2192118-CDS-Ecto-sp13_S_contig9702:4934..5135Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9702 4935..5135 +
1681464234.232089-CDS-Ecto-sp13_S_contig9702:5394..62011681464234.232089-CDS-Ecto-sp13_S_contig9702:5394..6201Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9702 5395..6201 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9702.21338.1

>prot_Ecto-sp13_S_contig9702.21338.1 ID=prot_Ecto-sp13_S_contig9702.21338.1|Name=mRNA_Ecto-sp13_S_contig9702.21338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=561bp
MAGDGFVVIVALEPRPLPSLGLDERFTRIDYTAKCTMLDVLEDLARVLRV
PTGDLTLLESEGLEAVDLMHTLSEYHGQHTAPCCSVFAGKRPQSPHYVKG
QRKEINLKVKHTPVPHQLVTCTVEGGKGRNVLRQAMVRLPNTATFGELLA
CAREKRHGVLELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHVGLAVVV
SFPRGSQRSLSLTMGPGATIGDVNQRICVDHGIIPSRQGLTICGGAQRLG
ANVTLKECCVSGVPVGGFSSKGWGELRLELHVTECTMRNSLQVAMKDSSQ
GWSASEFRGAVGVGLPSRGTDALRSPSQSSHLTPSPPAAATYVPQNNEGS
SLTTASSLLRSGASTVEIRPAIEHESGPYSTVMFALSPSGRALTLTMVPT
ATVLDAKTQVAAFEGVSPCRQRLLWRGVLMEPDGALLRRLGARSGDTLIV
GYRVGPCAPPEVMRPVVELEGNAAGDDDALTADAAISPIHSPSHHRLCGA
QRGTLDNSGSSNTDGDIPEQGTSGVEAAATVADGDQNNDVIAPEGGGGDG
GGGGSSMGVDE
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mRNA from alignment at Ecto-sp13_S_contig9702:2704..6201+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9702.21338.1 ID=mRNA_Ecto-sp13_S_contig9702.21338.1|Name=mRNA_Ecto-sp13_S_contig9702.21338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3498bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9702:2704..6201+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGCATTGCCATACTGACCCTGAACCCCAGCCAGGAGCTACGTTGCCTA
TTGCCTTACCTGAAGAGAACGCGCGAGATTCTCCGGTACCCCTCTCTTGA
CCGCGCAACACGTGTGTCGTAACGTTAGACTGACGACGTGAGACGTCGTA
CTCATGGCAGGCGACGGGTTTGTGGTGATCGTGGCATTGGAGCCTAGGCC
ATTGCCAAGCCTCGGTCTCGATGAGCGCTTCACTCGGATCGACTATACAG
CCAAGTGAGCTGACTGCCCCCCGCTGCTTGTGATTTACCTCGTATTCATG
ACACACTGTTCTTTCATGTGTCGGGATCGCGTGAGCGGGATACACGGGCG
GTGACAGTCCCTTAATTGTCAATCGCAGCTTCCATCGCGCGTGTACCTTT
TTCTCTCTCTCTCTCTCCCTCTCTATCTCTCTCTCTCTCTTTCTCTCTTC
TTCTCCTCGTCAATCACAAGTCGTGCGGAAAATGCGGATTGGGGTTCAGC
ACCACCCCACCCACCCCCCGTATTGCCCTACCAGATGTACCATGCTCGAT
GTTCTCGAGGATTTGGCACGTGTGTTGAGAGTGCCGACAGGAGACCTAAC
TTTACTGGAATCTGAAGGTGTGTATCGTAGTCTAGATTTGTAAGGCAATA
GCAACGTACCGTAGGACGGTATGTGAACAAGCATCATAGTTACACGGGTG
GCCAGAGGGCAGGTTGGTAGTTGGTGGGGGAGGTTGTAGGAAGGTTGCAG
CCCAAAGAGTAAGTTATCCCGCATCTTGGGTCGTGGCGTTATTGCAATCA
ACACGGCGGGCTGCAAGCCTGAAGAAAAAATGTGTTCAAGGTCGAACTCG
GCCTCTCAACCTCCCCCCCCCAGGTTGTAGTTGGTGCTCAACCTGCCCTA
TGGCCACCCGTGTAAGTGATGGCGAACAATATTGTGGCCCATCGACGCTA
GAGAGGCGAAAGCGGAGGGGTTGGTTGAACGATACAACTTGATGATCACG
TAACTGTTGTCAATACTTTGTAAAACTATAGCAGTAAAGTAGTAGTACAA
CCTGAAGTGTGGCCAGCGAATTTCGATTTATCGGAGCAATATTGAGTTTT
TCTGTTCGGTATCCCGTGTCAAAAGGTGCTCGTAGACTTAACTTCCCGGC
GGCCCTGTTCCTTAGGTGCATGAAATCTGTCCGCTAATGAGGGCGATTCG
TGACAAGCACCGACTTTCGGTCCGCAAGCTTGCCGAATTACAGGCCTTTT
TGTTTCGCGTTTCACTTTCATCACGTAGGACTGGAGGCTGTAGACCTCAT
GCACACACTGTCGGAGTACCACGGCCAGCATACTGCACCATGCTGCTCTG
TTTTCGCTGGAAAGCGCCCCCAATCGCCTCACTACGTCAAGGGGCAGCGG
AAGGAGATCAACTTGAAGGTAATCCGACCAGGTTGATAGGCGTCAAGAAA
ATAGTTTACATTAAGCTTTTATCGGCGTGCCTAAAGTACATCGAGCGGGG
CACAATTTTCTGAAAGGCGCATACGTCACAGAGGTCGAGGACGGACACAT
CCAAGATTTTTTCCGAGCACAGGAACTTGTTCGGGTGGTTCATCAGAAAT
AGAGTTACTAATAATTGTGGCGTGTTCCGACGTTGTTTTAATGTTATCGC
GGCAGGTGAAGCACACTCCGGTACCGCATCAGCTAGTCACATGCACAGTG
GAGGGGGGCAAAGGCCGCAACGTCCTTCGTCAGGCTATGGTTCGTCTGCC
CAACACGGCAACGTTCGGGGAGCTGCTCGCATGCGCTCGAGAAAAACGAC
ATGGGGTCCTTGAGCTTGAAGGCCCTGTGTACGGGCGCGATGGTGAACTA
GACACCACACTGCGGGATGGTTGGGTGCGGAATAGTTGCAAGGTTGATGG
AACGCTGCACGTAGGCCTTGCGGTCGTCGTTTCGTTTCCCCGCGGAAGCC
AGAGGTCGCTGTCCCTCACCATGGGGCCAGGCGCCACGATTGGCGACGTC
AACCAGGTGAGATTACCGCGACTTGCTTTGAACGCTTCGAAGCACTTCCA
GTATCGCAGACGTTACGAACGGTGTTTGTCTCGATAGGGGATACTCGTGC
GGCAGGCGTATAGTTCCCTCTGAGATATACCTAGAAACCTTCGATGTTGC
ATGCACCAAGAGTAGCGTCGACGCGTTGCTTGATCACCACCCGTCTCACC
TGTCCGTTGTCCTCCGATCTACGTCGTACAGAGGATATGTGTCGACCACG
GCATTATCCCAAGCCGCCAAGGCTTGACGATCTGCGGAGGGGCGCAGCGA
CTAGGAGCTAACGTTACCCTCAAGGAATGCTGCGTGTCGGGGGTTCCAGT
GGGAGGGTTTTCGTCGAAGGGCTGGGGCGAGCTACGTCTTGAGCTACACG
TTACTGAATGCACCATGCGAAATAGCCTTCAGGTAGGAGCCAGCCGTTGG
TCACTCTCTTCTTCGACGTTACGTGAATCCGTGTCCACTGCATGCATGTG
TCACAATGTCCCTCTGGGAGCTTGTTTAGACTCACAGAGCCCAGTAAAAC
TATGAATGATTTTGGCAAACCTGCGCTCCAATCGTGGACGTCTGTGAGAC
ATGCTTTATTTTGATCATGCGCTCGCAGCATCTTGAGGGGCGAACGGCCC
TTCTTCGACCGGTCCGAACTCCCTCGTTAACACTGCACTAGGTGGCAATG
AAAGATTCGAGCCAAGGCTGGTCCGCCAGCGAGTTCAGAGGCGCTGTTGG
CGTCGGTCTTCCATCTCGAGGCACCGATGCACTGCGGTCCCCTTCGCAGT
CCTCTCACCTCACACCGTCACCCCCGGCAGCGGCCACCTACGTCCCACAA
AACAACGAAGGTAGCTCCTTGACGACAGCGTCATCTTTGCTCCGCAGCGG
CGCTAGCACGGTCGAGATTCGACCCGCCATCGAGCACGAAAGCGGTCCTT
ACTCAACCGTCATGTTTGCTCTAAGCCCCTCCGGCCGGGCGCTGACGCTG
ACCATGGTGCCGACCGCCACGGTCCTGGACGCCAAGACACAAGTGGCCGC
CTTCGAAGGGGTGTCCCCCTGCCGGCAACGCCTCCTGTGGAGGGGGGTAC
TCATGGAGCCCGACGGCGCACTGCTGAGAAGGCTTGGAGCGCGGAGCGGC
GACACGCTGATCGTGGGCTACCGCGTTGGCCCTTGCGCGCCACCCGAGGT
GATGAGGCCGGTGGTCGAGCTGGAAGGGAATGCCGCAGGTGACGACGACG
CCCTAACCGCGGACGCGGCGATAAGCCCTATACATTCCCCGTCCCACCAC
CGACTGTGTGGAGCTCAACGGGGGACCCTGGACAATAGCGGTAGCAGCAA
CACTGACGGGGATATTCCAGAACAGGGGACCTCGGGCGTCGAAGCTGCGG
CGACGGTAGCGGACGGAGACCAAAACAACGACGTCATCGCCCCTGAAGGA
GGTGGCGGTGACGGTGGTGGTGGTGGCAGCAGCATGGGCGTTGACGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9702:2704..6201+

>mRNA_Ecto-sp13_S_contig9702.21338.1 ID=mRNA_Ecto-sp13_S_contig9702.21338.1|Name=mRNA_Ecto-sp13_S_contig9702.21338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1683bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9702:2704..6201+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCAGGCGACGGGTTTGTGGTGATCGTGGCATTGGAGCCTAGGCCATT
GCCAAGCCTCGGTCTCGATGAGCGCTTCACTCGGATCGACTATACAGCCA
AATGTACCATGCTCGATGTTCTCGAGGATTTGGCACGTGTGTTGAGAGTG
CCGACAGGAGACCTAACTTTACTGGAATCTGAAGGACTGGAGGCTGTAGA
CCTCATGCACACACTGTCGGAGTACCACGGCCAGCATACTGCACCATGCT
GCTCTGTTTTCGCTGGAAAGCGCCCCCAATCGCCTCACTACGTCAAGGGG
CAGCGGAAGGAGATCAACTTGAAGGTGAAGCACACTCCGGTACCGCATCA
GCTAGTCACATGCACAGTGGAGGGGGGCAAAGGCCGCAACGTCCTTCGTC
AGGCTATGGTTCGTCTGCCCAACACGGCAACGTTCGGGGAGCTGCTCGCA
TGCGCTCGAGAAAAACGACATGGGGTCCTTGAGCTTGAAGGCCCTGTGTA
CGGGCGCGATGGTGAACTAGACACCACACTGCGGGATGGTTGGGTGCGGA
ATAGTTGCAAGGTTGATGGAACGCTGCACGTAGGCCTTGCGGTCGTCGTT
TCGTTTCCCCGCGGAAGCCAGAGGTCGCTGTCCCTCACCATGGGGCCAGG
CGCCACGATTGGCGACGTCAACCAGAGGATATGTGTCGACCACGGCATTA
TCCCAAGCCGCCAAGGCTTGACGATCTGCGGAGGGGCGCAGCGACTAGGA
GCTAACGTTACCCTCAAGGAATGCTGCGTGTCGGGGGTTCCAGTGGGAGG
GTTTTCGTCGAAGGGCTGGGGCGAGCTACGTCTTGAGCTACACGTTACTG
AATGCACCATGCGAAATAGCCTTCAGGTGGCAATGAAAGATTCGAGCCAA
GGCTGGTCCGCCAGCGAGTTCAGAGGCGCTGTTGGCGTCGGTCTTCCATC
TCGAGGCACCGATGCACTGCGGTCCCCTTCGCAGTCCTCTCACCTCACAC
CGTCACCCCCGGCAGCGGCCACCTACGTCCCACAAAACAACGAAGGTAGC
TCCTTGACGACAGCGTCATCTTTGCTCCGCAGCGGCGCTAGCACGGTCGA
GATTCGACCCGCCATCGAGCACGAAAGCGGTCCTTACTCAACCGTCATGT
TTGCTCTAAGCCCCTCCGGCCGGGCGCTGACGCTGACCATGGTGCCGACC
GCCACGGTCCTGGACGCCAAGACACAAGTGGCCGCCTTCGAAGGGGTGTC
CCCCTGCCGGCAACGCCTCCTGTGGAGGGGGGTACTCATGGAGCCCGACG
GCGCACTGCTGAGAAGGCTTGGAGCGCGGAGCGGCGACACGCTGATCGTG
GGCTACCGCGTTGGCCCTTGCGCGCCACCCGAGGTGATGAGGCCGGTGGT
CGAGCTGGAAGGGAATGCCGCAGGTGACGACGACGCCCTAACCGCGGACG
CGGCGATAAGCCCTATACATTCCCCGTCCCACCACCGACTGTGTGGAGCT
CAACGGGGGACCCTGGACAATAGCGGTAGCAGCAACACTGACGGGGATAT
TCCAGAACAGGGGACCTCGGGCGTCGAAGCTGCGGCGACGGTAGCGGACG
GAGACCAAAACAACGACGTCATCGCCCCTGAAGGAGGTGGCGGTGACGGT
GGTGGTGGTGGCAGCAGCATGGGCGTTGACGAG
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