prot_Ecto-sp13_S_contig9702.21338.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig9702.21338.1
Unique Nameprot_Ecto-sp13_S_contig9702.21338.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length561
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9702.21338.1 vs. uniprot
Match: D7FRN3_ECTSI (Ubiquitin-like domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRN3_ECTSI)

HSP 1 Score: 740 bits (1910), Expect = 2.170e-262
Identity = 386/426 (90.61%), Postives = 397/426 (93.19%), Query Frame = 0 
Query:  136 MVRLPNTATFGELLACAREKRHGVLELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHVGLAVVVSFPRGSQRSLSLTMGPGATIGDVNQRICVDHGIIPSRQGLTICGGAQRLGANVTLKECCVSGVPVGGFSSKGWGELRLELHVTECTMRNSLQVAMKDSSQGWSASEFRGAVGVGLPSRGTDALRSPSQSSHLTPSPPAAATYVPQNNEGSSLTTASSLLRSGASTVEIRPAIEHESGPYSTVMFALSPSGRALTLTMVPTATVLDAKTQVAAFEGVSPCRQRLLWRGVLMEPDGALLRRLGARSGDTLIVGYRVGPCAPPEVMRPVVELEGNAAGDDDALTADAAISPIHSPSHHRLCGAQRGTLDNSGSSNTDGDIPEQGTSGVEAAATVADGDQNNDVIAPEXXXXXXXXXXSSMGVDE 561
            MVRLPNTATFGELLA AREKRHG LELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLH+GLAVVVSFPRGSQRSLSLTMGPGATIGDV QRICVDHGI+PSRQGL ICGGAQRLGANVTLKECCV GVPVGGFS KGWGELRLELHV ECT RNSLQVAM+DSSQGWSASEFRGAVGVGLPSRGTD LRSPSQ SHLTPSPP AATYVPQNNEGSSLTT SSL R+GASTVE RP +EH SGPYSTVMFALSPSGRALTLTM PTATVLDAKTQVAAFEGVSPCRQRLLWRG+LMEPDGALLRRLGAR GDTLIVGYRVGP APPEVMRPVVELEGNAAGDDDA  ADAAISP HSPSHHR CGAQRGT+D+SGSSN DG IPEQGTSGVE+AA VADGD+NNDV+AP XXXXXXXXXXS M VDE
Sbjct:    1 MVRLPNTATFGELLARAREKRHGALELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHIGLAVVVSFPRGSQRSLSLTMGPGATIGDVKQRICVDHGIVPSRQGLMICGGAQRLGANVTLKECCVWGVPVGGFSPKGWGELRLELHVAECTTRNSLQVAMRDSSQGWSASEFRGAVGVGLPSRGTDVLRSPSQPSHLTPSPPVAATYVPQNNEGSSLTTPSSLHRNGASTVETRPTVEHGSGPYSTVMFALSPSGRALTLTMAPTATVLDAKTQVAAFEGVSPCRQRLLWRGILMEPDGALLRRLGARGGDTLIVGYRVGPGAPPEVMRPVVELEGNAAGDDDAQNADAAISPTHSPSHHRPCGAQRGTVDSSGSSNIDGGIPEQGTSGVESAAAVADGDENNDVVAPXXXXXXXXXXXSGMDVDE 426
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9702.21338.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRN3_ECTSI2.170e-26290.61Ubiquitin-like domain-containing protein n=2 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000626Ubiquitin domainPFAMPF00240ubiquitincoord: 389..449
e-value: 6.8E-7
score: 28.9
IPR000626Ubiquitin domainPROSITEPS50053UBIQUITIN_2coord: 389..450
score: 10.745
NoneNo IPR availableGENE3D3.10.20.90coord: 374..453
e-value: 2.2E-8
score: 35.8
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 381..453

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9702contigEcto-sp13_S_contig9702:2857..6201 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9702.21338.1mRNA_Ecto-sp13_S_contig9702.21338.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig9702 2704..6201 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig9702.21338.1 ID=prot_Ecto-sp13_S_contig9702.21338.1|Name=mRNA_Ecto-sp13_S_contig9702.21338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=561bp
MAGDGFVVIVALEPRPLPSLGLDERFTRIDYTAKCTMLDVLEDLARVLRV
PTGDLTLLESEGLEAVDLMHTLSEYHGQHTAPCCSVFAGKRPQSPHYVKG
QRKEINLKVKHTPVPHQLVTCTVEGGKGRNVLRQAMVRLPNTATFGELLA
CAREKRHGVLELEGPVYGRDGELDTTLRDGWVRNSCKVDGTLHVGLAVVV
SFPRGSQRSLSLTMGPGATIGDVNQRICVDHGIIPSRQGLTICGGAQRLG
ANVTLKECCVSGVPVGGFSSKGWGELRLELHVTECTMRNSLQVAMKDSSQ
GWSASEFRGAVGVGLPSRGTDALRSPSQSSHLTPSPPAAATYVPQNNEGS
SLTTASSLLRSGASTVEIRPAIEHESGPYSTVMFALSPSGRALTLTMVPT
ATVLDAKTQVAAFEGVSPCRQRLLWRGVLMEPDGALLRRLGARSGDTLIV
GYRVGPCAPPEVMRPVVELEGNAAGDDDALTADAAISPIHSPSHHRLCGA
QRGTLDNSGSSNTDGDIPEQGTSGVEAAATVADGDQNNDVIAPEGGGGDG
GGGGSSMGVDE
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000626Ubiquitin_dom
IPR029071Ubiquitin-like_domsf