mRNA_Ecto-sp13_S_contig12572.2132.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12572.2132.1
Unique NamemRNA_Ecto-sp13_S_contig12572.2132.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12572.2132.1 vs. uniprot
Match: D7FJY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJY1_ECTSI)

HSP 1 Score: 342 bits (877), Expect = 3.160e-117
Identity = 166/175 (94.86%), Postives = 169/175 (96.57%), Query Frame = 1 
Query:    1 AMQASLTEFTGPVWHVMATRGVGDWGFSVAREEGQLLDFKLNGDRILCWKHAQAAPGPTDMLTMKRISTFLFVATMLLLCVYVKLQGSCDRCCSSYPGAREKAGCTMAPTTSGGGAGAGDIVVEGCDVDVTEAADLCLRNAKIALFVTCGTMAGATALKWADRSKAKRQFKHQGA 525
            A++ASLTEFTGPVWHVMATRG GDWGFSVA EEGQLLDFKLNGDRILCWKHAQAAPG TDMLTMKRISTFLFVATMLLLCVYVKLQGSCDRCCSSYPGAREKAGC +APTTSGGGAGAGDIVVEGCDVDVTE ADLCLRNAKIALFVTCGTMAGATA KWADRSKAKRQFKHQGA
Sbjct:  110 ALKASLTEFTGPVWHVMATRGAGDWGFSVAHEEGQLLDFKLNGDRILCWKHAQAAPGLTDMLTMKRISTFLFVATMLLLCVYVKLQGSCDRCCSSYPGAREKAGCAIAPTTSGGGAGAGDIVVEGCDVDVTEVADLCLRNAKIALFVTCGTMAGATAFKWADRSKAKRQFKHQGA 284
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12572.2132.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJY1_ECTSI3.160e-11794.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12572contigEcto-sp13_S_contig12572:1688..4898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size528
Hectar predicted targeting categorysignal anchor
Exons5
Ec32 ortholog descriptionDynein light chain, type 1/2
Ec32 orthologEc-10_000870.1
Cds size525
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12572.2132.1prot_Ecto-sp13_S_contig12572.2132.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12572 1688..4895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462670.7254624-CDS-Ecto-sp13_S_contig12572:1687..17891681462670.7254624-CDS-Ecto-sp13_S_contig12572:1687..1789Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12572 1688..1789 -
1681462670.737372-CDS-Ecto-sp13_S_contig12572:2086..22311681462670.737372-CDS-Ecto-sp13_S_contig12572:2086..2231Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12572 2087..2231 -
1681462670.7494042-CDS-Ecto-sp13_S_contig12572:3064..31481681462670.7494042-CDS-Ecto-sp13_S_contig12572:3064..3148Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12572 3065..3148 -
1681462670.760662-CDS-Ecto-sp13_S_contig12572:3856..39331681462670.760662-CDS-Ecto-sp13_S_contig12572:3856..3933Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12572 3857..3933 -
1681462670.7717853-CDS-Ecto-sp13_S_contig12572:4778..48951681462670.7717853-CDS-Ecto-sp13_S_contig12572:4778..4895Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12572 4779..4895 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462670.7824874-UTR-Ecto-sp13_S_contig12572:4895..48981681462670.7824874-UTR-Ecto-sp13_S_contig12572:4895..4898Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12572 4896..4898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12572.2132.1

>prot_Ecto-sp13_S_contig12572.2132.1 ID=prot_Ecto-sp13_S_contig12572.2132.1|Name=mRNA_Ecto-sp13_S_contig12572.2132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp
MQASLTEFTGPVWHVMATRGVGDWGFSVAREEGQLLDFKLNGDRILCWKH
AQAAPGPTDMLTMKRISTFLFVATMLLLCVYVKLQGSCDRCCSSYPGARE
KAGCTMAPTTSGGGAGAGDIVVEGCDVDVTEAADLCLRNAKIALFVTCGT
MAGATALKWADRSKAKRQFKHQGA*
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mRNA from alignment at Ecto-sp13_S_contig12572:1688..4898-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12572.2132.1 ID=mRNA_Ecto-sp13_S_contig12572.2132.1|Name=mRNA_Ecto-sp13_S_contig12572.2132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3211bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12572:1688..4898- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGATGCAGGCTTCCCTAACGGAGTTCACAGGGCCTGTATGGCATGTCAT
GGCCACCCGGGGGGTAGGTGATTGGGGCTTCTCTGTTGCGCGCGAAGAAG
GACAGCTGCTAGATTTCAAGGTCGGTGAAATGACACTCGTGGGGGTTGCC
GTTGTACATTGGTATTCTTTGACGCCAGATTGCCTTAAAAGAACTTTTTG
CAGGACGTAGTGTACCACATTGGTTGGGGGGGCACGTTGATGTTCTTTCT
GGCCGAGAACCGTTTCGAATGCAACGCTTGCGTATGGGATGGACACATCT
ATTCCATCGTCACGTTGAACACCCCAATTTTCGTATGCTAGCGAGATTTG
TAAGTGCGCATGGTGGGGGACAGCATTGGCGCCGAAACTTACGTTGGACG
TATTGGACGCCCGGTTGGAGAGGGTTTGGTACAGTAAACCAGCTTCGCGG
ATGGAAGATGAAATAGCCGCAGTTGTAGCCTGTTATGGTGTGATGCTCGT
TGCAGGGAATCGCATTCTGTCGAGGCTTGTCGACCCCGGGGAGGTGAATC
TGCAGAAGTAGCTGCGTACCGGTAGCTCATGGCTTTCTTCTTTCCGAGTA
GTTTGTTGGTCGAATCTTTATTTTTTTTTTCGCCAAGGAGAGAGAAACAA
AACAACACGTAAGAAGGACTGCCTACACCAAAACCGTGGACCCAAGCGGA
GGCACCGCAGGTATTTTGTACCCTTGCGTCTGCAGCGAGGATGCAACCCA
TTTCGAAATAGTTCATTTGTTCTGTAGTGCATCCTCTTCGTGTGCCGAGA
GTCCTTTTTCTTTGGTTGCTCCCCTTCTTTTACTCTGATTTTGTCGCCTC
TCCCTCGTATGTGTTGTCTTGCTCCCTCTCTCTCTCTGTCTTTCTTTCTG
TTTCTGTCTCTCTCTCTCGTTTGTGTCGGCGCCTTTGTCGCTCTTCCTCC
ACGCCGCACTCGCAGCTGAACGGGGACCGAATTCTCTGCTGGAAGCACGC
GCAGGCTGCTCCAGGGCCGACTGACATGCTCACCATGAAGCGGTGAGTCA
GAGAGAGAGAGAGAGAGAGCGAAAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGTTGGCCACACGGCGAGACAGCGCGCGCATCCCCAA
AGAAAGAAGAGGGGCTACGTCGTACTTACGTCTGTCTGTGTGTGTTGCAT
GTTGGCGTTTCTTTTAAAGTATTGTCAACAAGATGAGTGAACTAAGAGGC
ACGGCCTGATTCAACCCATCCGAAATGATCCTCTTCGAGTGGCCTGCCGA
AGTACGTGTCTGTGTTCTCTCGTAAGTGCTGAAACAGTTTGACCTCATCT
ACTGATATTCAGACCTGTGTTTCGAAGTTGTCGCATCATGGGAGACACAT
GAGATAGGGGTGTCTCCGAGCACGCACAATAATCAATGCTGGAGTTGAAG
AAGAAACAACGCCCATTTCGTTCTACGTAGACAATATATTTCATCGCGAA
TATATTTCGTTTTTTGGAGTTTTGCAAGCGGTCAGTGCAAAGGATTGTTC
CGCCGCACGACATGTATACATCACGTCGAGTATCCTAGTTTCTGTTCATT
GCGCTTGGAACAGTCTTGGCGTCAACGAAAGCCAGTAGGTCACGGCAGAC
GAATTCCTTCTGGTTGCTCACTCCCCCGAACAGCACGGTGCCAAGCGTGG
GTCTGAACCACCGTTTGTGCGTGTCTCTCTCTTGGTGGTTGCGCATTCAG
GATATCTACGTTCCTGTTCGTGGCAACGATGCTGCTCCTGTGCGTCTACG
TGAAGCTGCAAGGGTCGTGTGACCGGTGTTGCAGGTGTGCTCTCCCGAGA
TACCGTTGGTTTATTGGGACGTCTTTGTTGTTGAGTGGTGGGTCGGGAGC
GCCTGTTGTGAAAACAACGGCTGCGCGGGAAGGTAACGTTGTCGTTTCGT
GTGCTTGTCCCCCCCTCCTCGTCTGTTTGTCGCCCCTGCACGCAGCAGTT
CTTTTTTGTTCTCGTATGTACATCTACGGTGTGATTGTGATAGGGCCACG
CGTCGATGCTACCCTCGAACCAGTGGCATCCTAATTCATGATTTGGTACT
ATTCGTTACGCCCTTTCCCCTCAACGCCCGCCACCCCTTGCGAGCCTACG
GGAGTCGTTGCGAGCCAAAACTTTGCGCCCAATACTACTGCACCTCTCAG
TCTCTCAAAGAGAAAATAATCTGGACCATCTTCGCGTTTGCTGCCGTTTC
ATGCCTGCGGACGTTGGACTTTTTTTCTCGTGACAACGATGTTGGTGGTC
ACTTTAGAGCTATAGGGGGCCCATCACCCTGCACCCCCATATGTGCACCC
GCCGGCATGAACAGCAGAACGACACCGTGGCATCCCACGAAAGATCTTGC
GTTGTCGTATGCATATTGACTGCAGGGAGAACCAACTGATATTTTGGTTT
GTACTTTAAGTCTTTGTAGCGAAAATCAAACCGTTTAACTAGTCTTCGCT
GACTTTTAAGTTCTACCGGATTGATTTTCACCCATAGGCCGATGTGCCTG
CGTTCAGATTTTTTTCTTTTTTCCGCCGACCGAAATACCTTCTTCCTTCG
GCACGCTTAAACACCGGACCGGGATCCTTCCCTGAACCCTGCCCCCCGTG
CCCCTCTTCTTCTCTAGTTCTTACCCAGGAGCACGCGAGAAGGCCGGGTG
CACAATGGCGCCAACCACTTCCGGCGGGGGGGCAGGAGCCGGCGACATAG
TAGTGGAAGGGTGCGACGTTGATGTGACTGAGGCTGCAGATCTCTGCCTG
CGCAACGCCAAGGTAAGAACGAGTCGTGCCGACAGCGCAAGATGGGACGG
TAGTTTCGAGAGAAGCAGGACAAGGTGCACGTGGCAGCCAAGCCTCGATT
CAACACTGTTGTGAGGGACTGTTCGGTTTGGCTTGTCTGTTTTTTTGGTG
CACTGCACAAGTCCAACCGAACAACAAAAGTCGGTATTGTGTGCCTGTAA
TTAATATTTTCGGGCGCTCGTGAGAAATTTCGTCTTGACCACCGTGCGTG
TGCTTCTCGTTCGTGCTTGCGGCGGTGTCATCGTCGCTCTTGTTGCTTCC
ACCTTCCAGATTGCGTTGTTCGTGACGTGTGGAACTATGGCCGGTGCCAC
GGCTTTGAAGTGGGCTGACCGAAGCAAGGCCAAGCGCCAATTCAAGCACC
AGGGTGCTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12572:1688..4898-

>mRNA_Ecto-sp13_S_contig12572.2132.1 ID=mRNA_Ecto-sp13_S_contig12572.2132.1|Name=mRNA_Ecto-sp13_S_contig12572.2132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12572:1688..4898- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGCTTCCCTAACGGAGTTCACAGGGCCTGTATGGCATGTCATGGC
CACCCGGGGGGTAGGTGATTGGGGCTTCTCTGTTGCGCGCGAAGAAGGAC
AGCTGCTAGATTTCAAGCTGAACGGGGACCGAATTCTCTGCTGGAAGCAC
GCGCAGGCTGCTCCAGGGCCGACTGACATGCTCACCATGAAGCGGATATC
TACGTTCCTGTTCGTGGCAACGATGCTGCTCCTGTGCGTCTACGTGAAGC
TGCAAGGGTCGTGTGACCGGTGTTGCAGTTCTTACCCAGGAGCACGCGAG
AAGGCCGGGTGCACAATGGCGCCAACCACTTCCGGCGGGGGGGCAGGAGC
CGGCGACATAGTAGTGGAAGGGTGCGACGTTGATGTGACTGAGGCTGCAG
ATCTCTGCCTGCGCAACGCCAAGATTGCGTTGTTCGTGACGTGTGGAACT
ATGGCCGGTGCCACGGCTTTGAAGTGGGCTGACCGAAGCAAGGCCAAGCG
CCAATTCAAGCACCAGGGTGCTTGA
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