prot_Ecto-sp13_S_contig12572.2132.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12572.2132.1
Unique Nameprot_Ecto-sp13_S_contig12572.2132.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length175
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12572.2132.1 vs. uniprot
Match: D7FJY1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJY1_ECTSI)

HSP 1 Score: 340 bits (873), Expect = 1.230e-116
Identity = 165/174 (94.83%), Postives = 168/174 (96.55%), Query Frame = 0 
Query:    1 MQASLTEFTGPVWHVMATRGVGDWGFSVAREEGQLLDFKLNGDRILCWKHAQAAPGPTDMLTMKRISTFLFVATMLLLCVYVKLQGSCDRCCSSYPGAREKAGCTMAPTTSGGGAGAGDIVVEGCDVDVTEAADLCLRNAKIALFVTCGTMAGATALKWADRSKAKRQFKHQGA 174
            ++ASLTEFTGPVWHVMATRG GDWGFSVA EEGQLLDFKLNGDRILCWKHAQAAPG TDMLTMKRISTFLFVATMLLLCVYVKLQGSCDRCCSSYPGAREKAGC +APTTSGGGAGAGDIVVEGCDVDVTE ADLCLRNAKIALFVTCGTMAGATA KWADRSKAKRQFKHQGA
Sbjct:  111 LKASLTEFTGPVWHVMATRGAGDWGFSVAHEEGQLLDFKLNGDRILCWKHAQAAPGLTDMLTMKRISTFLFVATMLLLCVYVKLQGSCDRCCSSYPGAREKAGCAIAPTTSGGGAGAGDIVVEGCDVDVTEVADLCLRNAKIALFVTCGTMAGATAFKWADRSKAKRQFKHQGA 284
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12572.2132.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJY1_ECTSI1.230e-11694.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..65
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 66..84
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 85..174
IPR037177Dynein light chain superfamilySUPERFAMILY54648DLCcoord: 4..50

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12572contigEcto-sp13_S_contig12572:1688..4895 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12572.2132.1mRNA_Ecto-sp13_S_contig12572.2132.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12572 1688..4898 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12572.2132.1 ID=prot_Ecto-sp13_S_contig12572.2132.1|Name=mRNA_Ecto-sp13_S_contig12572.2132.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=175bp
MQASLTEFTGPVWHVMATRGVGDWGFSVAREEGQLLDFKLNGDRILCWKH
AQAAPGPTDMLTMKRISTFLFVATMLLLCVYVKLQGSCDRCCSSYPGARE
KAGCTMAPTTSGGGAGAGDIVVEGCDVDVTEAADLCLRNAKIALFVTCGT
MAGATALKWADRSKAKRQFKHQGA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037177DLC_sf