mRNA_Ecto-sp13_S_contig12567.2125.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12567.2125.1
Unique NamemRNA_Ecto-sp13_S_contig12567.2125.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12567.2125.1 vs. uniprot
Match: D7FLL7_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL7_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 4.920e-28
Identity = 70/138 (50.72%), Postives = 85/138 (61.59%), Query Frame = 2
Query:    2 VDALIEAGAGTEMKRTGGATPVWIAAFFCSP*TLLALFLKGA-IANAPDNRGKTPLHVACLPRGGDLAAVVDLLLRWGADETAVDNEGRTPAERLNDVPGDRS-CSQEDFDRAQLLLARAPADRAWRGRGWLVMLRSR 409
            V  L++A A TE+K  GG TP+  AA       + AL    A + N  D  G TPLH AC+ +   LAA +DLLLRWGADETA +  GRTP + L     D   CS ++ DRA+LLL RAP DR WR RGWLV+LRSR
Sbjct:  291 VHMLVKARADTELKSVGGWTPLHAAAEHHRVNCVAALLQNNASVRNRFDATGDTPLHRACVEQREGLAASIDLLLRWGADETARNKRGRTPLDVLGATRTDNPHCSPDEVDRARLLLVRAPTDRRWRRRGWLVVLRSR 428          
BLAST of mRNA_Ecto-sp13_S_contig12567.2125.1 vs. uniprot
Match: D8LS36_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS36_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.170e-27
Identity = 68/117 (58.12%), Postives = 81/117 (69.23%), Query Frame = 2
Query:  110 LFLKGAIANAPDNRGKTPLHVACLPRGGDLAAVVDLLLRWGADETAVDNEGRTPAERLN--DVPGDRS-CSQEDFDRAQLLLARAPADRAWRGRGWLVMLRSRASTARITTCDSSGD 451
            L   GA   A D  G TPLHVAC  +   L A VDLLLRWGADETA++N G+TPA  L+  D   DR+ CS+ + +R ++LLARAPADRAWR R WLVMLRS A TA+ TT D +GD
Sbjct:  325 LLWHGASLTAQDTEGNTPLHVACYRQHKGLEAPVDLLLRWGADETALNNAGKTPAGLLDEHDNENDRTTCSEAEINRVRMLLARAPADRAWRRRCWLVMLRSFARTAKATT-DETGD 440          
BLAST of mRNA_Ecto-sp13_S_contig12567.2125.1 vs. uniprot
Match: D7FSI6_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSI6_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 1.530e-27
Identity = 69/146 (47.26%), Postives = 88/146 (60.27%), Query Frame = 2
Query:    2 VDALIEAGAGTEMKRTGGA----TPVWIAAFFCSP*TLLALFLKGAIANAPDNRGKTPLHVACLPRGGDLAAVVDLLLRWGADETAVDNEGRTPAERLNDVPGDRSCSQEDFDRAQLLLARAPADRAWRGRGWLVMLRSRASTARI 427
            V+ L+EAGA  +++   G+    TP+  AA   S   L  L   GA  N PD+ G  PLH+A   +   +  VVDLLLRWGA ETAV+  G TPAE    +   R  + E+   A +LLARAPADRAWR RGW+VMLR+R+ T RI
Sbjct:  218 VEVLLEAGADADVESLPGSPCYDTPLLAAAESMSNEALRVLLRNGADPNKPDDNGSMPLHLAAHEQTPGVMEVVDLLLRWGASETAVNKHGNTPAEVFQRLAIHRPDATEERAGALVLLARAPADRAWRRRGWVVMLRARSETERI 363          
BLAST of mRNA_Ecto-sp13_S_contig12567.2125.1 vs. uniprot
Match: D8LNI8_ECTSI (EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI8_ECTSI)

HSP 1 Score: 113 bits (283), Expect = 1.900e-27
Identity = 63/118 (53.39%), Postives = 74/118 (62.71%), Query Frame = 2
Query:  107 ALFLKGAIANAPDNRGKTPLHVACLPRGGDLAAVVDLLLRWGADETAVDNEGRTPAE----RLNDVPGDRSCSQEDFDRAQLLLARAPADRAWRGRGWLVMLRSRASTARITTCDSSG 448
            ALF  GA      N+G TPLH  C  R   L A VD+LLRWGADET ++  G +PA+    R   V G     Q++ DR +LLL+RAPADRAWR RGWLVMLRSR S A+   C SSG
Sbjct:    3 ALFQHGAQVGVRGNQGYTPLHETCWERHEGLEAAVDMLLRWGADETTLNYGGASPADFLGGRYGKVIGHNPAPQDEIDRTRLLLSRAPADRAWRRRGWLVMLRSRDSKAQEGKCRSSG 120          
BLAST of mRNA_Ecto-sp13_S_contig12567.2125.1 vs. uniprot
Match: D8LRZ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRZ8_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 3.380e-27
Identity = 85/178 (47.75%), Postives = 107/178 (60.11%), Query Frame = 2
Query:  152 GKTPLHVACLPRGGDLAAVVDLLLRWGADETAVDNEGRTPAERL--NDVPGDRSCSQEDFDRAQLLLARAPADRAWRGRGWLVMLRSRASTARITTCDSSGDTRVESSGAAASGMGERR----KMARREGEASVTGGGREQAGSGVDDVEPESPAGSRAVRGAVGWLVGMQPEGVFRS 667
            G TPLH AC  +   + A VDLLL+WGADETAV N+G TPA+ L  N+     +CS  +  R +LLLARAPA+RAWR R WLVMLRS A TAR TT D +GD    S+      +G+R+    K ARRE   S  GG R +  +G  +V  E   G+  +   V  +VG+ PE VFRS
Sbjct:  280 GTTPLHRACYRQDIGVEATVDLLLQWGADETAVHNDGNTPADWLVENNNENGTTCSTAEIGRVRLLLARAPANRAWRRRCWLVMLRSCAKTARATT-DKTGDADEGSND-----VGDRKDGKCKGARRENGESAGGGVRSRM-NGAGEVGVEG--GASGLASIVASVVGLGPEEVFRS 448          
BLAST of mRNA_Ecto-sp13_S_contig12567.2125.1 vs. uniprot
Match: A0A6H5JWW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWW4_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.380e-25
Identity = 73/145 (50.34%), Postives = 90/145 (62.07%), Query Frame = 2
Query:   35 EMKRTGGATPVWIAAFFCSP*TLLA---LFLKGAIANAPDNRGKTPLHVACLPRGGDLAAVVDLLLRWGADETAVDNEGRTPAERLN--DVPGDRS-CSQEDFDRAQLLLARAPADRAWRGRGWLVMLRSRASTARITTCDSSGD 451
            E    G + P   +A    P  L A   L   GA   A D  G TPLH+AC  +   L A VDLLLRWGADETA++N+G+TPA+ L+  D   DR+ CS+ + +R +LLLARAPAD+A R R WLVMLRS A T R TT D +GD
Sbjct:  513 ESSEGGSSAPPLFSA--TDPRNLKAMNTLLGHGASLTAQDVDGNTPLHLACYRQDSGLEAPVDLLLRWGADETALNNDGKTPADLLDEHDNENDRTTCSEAEIERVRLLLARAPADQARRRRCWLVMLRSFARTTRATT-DETGD 654          
BLAST of mRNA_Ecto-sp13_S_contig12567.2125.1 vs. uniprot
Match: A0A6H5JRY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRY1_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 6.730e-25
Identity = 80/175 (45.71%), Postives = 107/175 (61.14%), Query Frame = 2
Query:  152 GKTPLHVACLPRGGDLAAVVDLLLRWGADETAVDNEGRTPAERLN--DVPGDRS-CSQEDFDRAQLLLARAPADRAWRGRGWLVMLRSRASTARITTCDSSGDTRVESSGAAASGMGERRKMARREGEASVTGGGREQAGSGVDDVEPESPAGSRAVRGAVGWLVGMQPEGVFRS 667
            G TPLH AC  +   + A VDLLLRWGADETA+DN+ +TPA+ L+  D   DR+ CS+ + ++ +LL+ARAPA+RAWR R WLVMLRS A TAR TT +++GD   E S             ARRE   S  G  R +  +G  +V  +   G+  +   V  +VG++PE VFRS
Sbjct:  257 GGTPLHWACYWQVRGVEATVDLLLRWGADETALDNDSKTPADLLDEDDNENDRTTCSEAEIEQVRLLMARAPANRAWRRRCWLVMLRSYAKTARATT-EATGDA-DEGSKXXXXXXXXXXXXARRENGESAGGWLRSRM-NGAGEVGVD--IGAAGLASIVNSVVGLEPEEVFRS 426          
BLAST of mRNA_Ecto-sp13_S_contig12567.2125.1 vs. uniprot
Match: D7FYG4_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYG4_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 2.340e-24
Identity = 66/146 (45.21%), Postives = 84/146 (57.53%), Query Frame = 2
Query:    2 VDALIEAGAGTEMKRTG-----------GATPVWIAAFFCSP*TLLALFLKGAIANAPDNRGKTPLHVACLPRGGDLAAVVDLLLRWGADETAVDNEGRTPAERLNDVPGDRSCSQEDFDRAQLLLARAPADRAWRGRGWLVMLRS 406
            V AL+E GA  E +              G+T + +AA++ +  T+LAL  KGA ANAPD+ G  PLH+ C        AV DLLLRWGA+ETA DN+G TPA+ +         S E   R Q LLA APA RAWR RG ++MLR+
Sbjct:  298 VHALVEVGADVEARCLAQLLSEQRHSLKGSTSLHVAAYWETLDTMLALLQKGANANAPDDDGHGPLHLVCKYPKARSVAVADLLLRWGAEETATDNDGNTPADFIQS-------SDESDGRLQRLLANAPAGRAWRRRGMVIMLRA 436          
BLAST of mRNA_Ecto-sp13_S_contig12567.2125.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 3.030e-23
Identity = 61/142 (42.96%), Postives = 81/142 (57.04%), Query Frame = 2
Query:    2 VDALIEAGAGTEMKRTGGATPVWIAAFF-CSP*TLLALFLKGAIANAPDNRGKTPLHVACLPRGGDLAAVVDLLLRWGADETAVDNEGRTPAERLNDVPGDRSCSQEDFDRAQLLLARAPADRAWRGRGWLVMLRSRASTAR 424
            +D L++AGA  + K  G +TP+ +A  F  S   +  L  +G   + P +  KT LH+AC+       A+VDLLLRWG  E  +D  G TPA  L+   G  S    + +RA +LLA APADRAWR R WLVMLR+R    R
Sbjct:  285 MDVLLDAGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQVSGPMD--KTMLHLACMTMAPGFDAIVDLLLRWGVSELTLDKGGNTPAALLSVAEGSSSRKAREVERAHVLLANAPADRAWRRRSWLVMLRARTERER 424          
BLAST of mRNA_Ecto-sp13_S_contig12567.2125.1 vs. uniprot
Match: D8LQN0_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQN0_ECTSI)

HSP 1 Score: 104 bits (259), Expect = 2.740e-22
Identity = 88/230 (38.26%), Postives = 117/230 (50.87%), Query Frame = 2
Query:    2 VDALIEAGAGTEMKRTGG--ATPVWIAA--FFCSP*TLLALFLKGAIANAPDNRGKTPLHVACLPRGGDLAAVVDLLLRWGADETAVDNEGRTPAERL-----NDVPGDRSCSQEDFDRAQLLLARAPADRAWRGRGWLVMLRSRASTARITTCDSSGDTRVESSGAAASGMGERRKMARREGEASVTGGGREQAGSGVDDVEPESPAGSRAVRGAVGWLVGMQPEGVFR 664
            V  L+ AGA   +K T    ATP+ +A   +  S  T+ AL   GA  NA      TPLH+AC    G   +VV+LLLRWGADE   +N+G TPA+ +     ND+  +    + D  R   +LARAPADR+WR RGWLV+ RS  +   I    SS  +    +G +A       K+AR  G+           GS  DD E E       +R  VG LVG++ EG+FR
Sbjct:  300 VRVLLGAGADVNVKGTNDSCATPLHLAVNRWMTSTGTICALLEGGANINARTAGDDTPLHIACTRLRG---SVVELLLRWGADEKLPNNDGDTPADVVGVLEQNDLDDEER--EADNQRIHRMLARAPADRSWRRRGWLVLSRSCPTRVHIANGSSSSSSISRINGNSA-------KVARVSGQ-----------GSSRDDEETEDQM-MVDLRDLVGRLVGLEAEGLFR 505          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12567.2125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLL7_ECTSI4.920e-2850.72Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LS36_ECTSI1.170e-2758.12Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7FSI6_ECTSI1.530e-2747.26Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LNI8_ECTSI1.900e-2753.39EsV-1-8 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
D8LRZ8_ECTSI3.380e-2747.75Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JWW4_9PHAE3.380e-2550.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRY1_9PHAE6.730e-2545.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYG4_ECTSI2.340e-2445.21Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D8LBP9_ECTSI3.030e-2342.96Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
D8LQN0_ECTSI2.740e-2238.26Ankyrin repeat protein n=2 Tax=Ectocarpus siliculo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12567contigEcto-sp13_S_contig12567:1347..2014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size668
Hectar predicted targeting categoryother localisation
Exons1
Cds size378
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462670.047506-UTR-Ecto-sp13_S_contig12567:1346..15821681462670.047506-UTR-Ecto-sp13_S_contig12567:1346..1582Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12567 1347..1582 +
1681462670.0647194-UTR-Ecto-sp13_S_contig12567:1960..20141681462670.0647194-UTR-Ecto-sp13_S_contig12567:1960..2014Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12567 1961..2014 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462670.0561907-CDS-Ecto-sp13_S_contig12567:1582..19601681462670.0561907-CDS-Ecto-sp13_S_contig12567:1582..1960Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12567 1583..1960 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12567.2125.1prot_Ecto-sp13_S_contig12567.2125.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12567 1583..1960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12567.2125.1

>prot_Ecto-sp13_S_contig12567.2125.1 ID=prot_Ecto-sp13_S_contig12567.2125.1|Name=mRNA_Ecto-sp13_S_contig12567.2125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=126bp
MKPPWTTRAAPRRNDSTTCPVTVRVPKKTSIGRSCCWPGLPRTGRGVAAA
GWSCFVHELRRRGSLPATAVATPASRVRVRLPAEWANVVRWRGGKEKQVL
RVVDASRQAAGSMTSNPRVRLAVGP*
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mRNA from alignment at Ecto-sp13_S_contig12567:1347..2014+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12567.2125.1 ID=mRNA_Ecto-sp13_S_contig12567.2125.1|Name=mRNA_Ecto-sp13_S_contig12567.2125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=668bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12567:1347..2014+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCGACGCCCTGATCGAAGCGGGGGCGGGTACGGAGATGAAAAGAACGG GGGGAGCCACGCCTGTTTGGATCGCTGCATTTTTCTGCTCTCCCTAAACC TTGCTCGCTCTCTTTCTGAAAGGGGCAATCGCCAACGCGCCAGACAACAG GGGAAAGACGCCTTTGCACGTAGCTTGCCTTCCTCGAGGCGGAGACCTTG CAGCAGTCGTGGACCTCTTGCTAAGGTGGGGCGCGGATGAAACCGCCGTG GACAACGAGGGCCGCACCCCGGCGGAACGACTCAACGACGTGCCCGGTGA CCGTTCGTGTTCCCAAGAAGACTTCGATCGGGCGCAGCTGCTGCTGGCCC GGGCTCCCGCGGACAGGGCGTGGCGTGGCCGCGGCTGGCTGGTCATGCTT CGTTCACGAGCTTCGACGGCGAGGATCACTACCTGCGACAGCAGTGGCGA CACCCGCGTCGAGAGTTCGGGTGCGGCTGCCAGCGGAATGGGCGAACGTC GTAAGATGGCGAGGAGGGAAGGAGAAGCAAGTGTTACGGGTGGTGGACGC GAGCAGGCAGGCAGCGGGGTCGATGACGTCGAACCCGAGAGTCCGGCTGG CAGTAGGGCCGTAAGGGGTGCGGTGGGTTGGCTGGTGGGCATGCAGCCTG AGGGAGTGTTTCGGTCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12567:1347..2014+

>mRNA_Ecto-sp13_S_contig12567.2125.1 ID=mRNA_Ecto-sp13_S_contig12567.2125.1|Name=mRNA_Ecto-sp13_S_contig12567.2125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=378bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12567:1347..2014+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAACCGCCGTGGACAACGAGGGCCGCACCCCGGCGGAACGACTCAAC
GACGTGCCCGGTGACCGTTCGTGTTCCCAAGAAGACTTCGATCGGGCGCA
GCTGCTGCTGGCCCGGGCTCCCGCGGACAGGGCGTGGCGTGGCCGCGGCT
GGCTGGTCATGCTTCGTTCACGAGCTTCGACGGCGAGGATCACTACCTGC
GACAGCAGTGGCGACACCCGCGTCGAGAGTTCGGGTGCGGCTGCCAGCGG
AATGGGCGAACGTCGTAAGATGGCGAGGAGGGAAGGAGAAGCAAGTGTTA
CGGGTGGTGGACGCGAGCAGGCAGGCAGCGGGGTCGATGACGTCGAACCC
GAGAGTCCGGCTGGCAGTAGGGCCGTAA
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