prot_Ecto-sp13_S_contig12543.2108.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig12543.2108.1
Unique Nameprot_Ecto-sp13_S_contig12543.2108.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length79
Homology
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 8.580e-33
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 0
Query:    2 PWDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLEFVLIAREHEIMCCTPRAEAASA 72
            PW QDVKTLV AAS ACLTVFGVFAAKEDDD R+WGVFLGVGMLLIG EFVLIAREH+++CC PR EAASA
Sbjct: 1190 PWYQDVKTLVGAASVACLTVFGVFAAKEDDDPRLWGVFLGVGMLLIGAEFVLIAREHKLLCCKPRVEAASA 1260          
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.690e-30
Identity = 57/71 (80.28%), Postives = 62/71 (87.32%), Query Frame = 0
Query:    2 PWDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLEFVLIAREHEIMCCTPRAEAASA 72
            PW QDVKT V AAS ACLTVFGVFAAKEDDD R+WGVFLGVGMLLIG EF LIAREH+++CC PR +AASA
Sbjct: 1097 PWYQDVKTWVGAASVACLTVFGVFAAKEDDDPRLWGVFLGVGMLLIGGEFFLIAREHKLLCCKPRVDAASA 1167          
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Match: A0A6H5KNW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW8_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 4.300e-30
Identity = 53/71 (74.65%), Postives = 63/71 (88.73%), Query Frame = 0
Query:    2 PWDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLEFVLIAREHEIMCCTPRAEAASA 72
            PW QDVKT V AAS ACLTVFGVFA+KED+D R+WGVFLGVGM L+G+EF+LIAREH+++CC PR +AASA
Sbjct:  420 PWYQDVKTFVGAASVACLTVFGVFASKEDEDPRLWGVFLGVGMTLLGVEFLLIAREHKLLCCKPREDAASA 490          
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 7.040e-29
Identity = 54/74 (72.97%), Postives = 63/74 (85.14%), Query Frame = 0
Query:    2 PWDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLEFVLIAREHEIMCCTPRAEAASAGNE 75
            PW QDVKT V AAS  CL VFGVF  +EDDD R+WGVFLG+GMLL+G+EF LIARE++++C TPRAEAASAGNE
Sbjct: 1011 PWYQDVKTFVGAASLVCLAVFGVFHDEEDDDPRLWGVFLGLGMLLVGVEFGLIAREYKLLCFTPRAEAASAGNE 1084          
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Match: A0A6H5JSC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC0_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 9.420e-29
Identity = 55/74 (74.32%), Postives = 63/74 (85.14%), Query Frame = 0
Query:    2 PWDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLEFVLIAREHEIMCCTPRAEAASAGNE 75
            PW QDVKT V AAS ACLTVFGVF  +EDDD  +WGVFLG+GMLL G+EF LIARE++++C TPRAEAASAGNE
Sbjct:  677 PWYQDVKTFVGAASVACLTVFGVFHDEEDDDPLLWGVFLGLGMLLAGVEFGLIAREYKLLCFTPRAEAASAGNE 750          
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Match: A0A6H5KZE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE2_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 8.270e-27
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 0
Query:    2 PWDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLEFVLIAREHEIMCCTPRAEAASAGNEDSV 78
            PW QDVKT V AAS ACLTVFGVF A EDDD R+WGV LG G+L IG EFV+IARE++ +C  PR EAASA    S+
Sbjct:   95 PWYQDVKTWVGAASVACLTVFGVFVANEDDDPRLWGVILGFGVLFIGAEFVVIARENKRLCRKPRVEAASAVQTPSL 171          
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Match: A0A6H5JRW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW5_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 6.560e-21
Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = 0
Query:    3 WDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLEFVLIAREHEIMCC-TPRAEAASAGNE 75
            W +D++  V AA   C+TVFGVF AKEDDD R+WG+FLG+G++L  +EFVL+A+ HE  C  +PR EAASAGN+
Sbjct:  756 WVKDLRVQVGAAGALCVTVFGVFYAKEDDDPRLWGLFLGIGLVLAVVEFVLVAKLHERWCFKSPRVEAASAGNQ 829          
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Match: A0A6H5KED3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED3_9PHAE)

HSP 1 Score: 69.3 bits (168), Expect = 5.140e-12
Identity = 32/52 (61.54%), Postives = 38/52 (73.08%), Query Frame = 0
Query:    3 WDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLEFVLI 54
            W +DVK  +  AS ACLTVF  F AK+DDD R+WG FL VGMLLI ++ VLI
Sbjct:  329 WYEDVKAWILLASEACLTVFTAFVAKDDDDPRLWGSFLAVGMLLILIDAVLI 380          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FX69_ECTSI8.580e-3384.51LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FX56_ECTSI1.690e-3080.28LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KNW8_9PHAE4.300e-3074.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJV1_ECTSI7.040e-2972.97LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JSC0_9PHAE9.420e-2974.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZE2_9PHAE8.270e-2766.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRW5_9PHAE6.560e-2158.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KED3_9PHAE5.140e-1261.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..35
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 22..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..9
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 36..55
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 10..21
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 56..78
NoneNo IPR availableTMHMMTMhelixcoord: 36..55
NoneNo IPR availableTMHMMTMhelixcoord: 7..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12543contigEcto-sp13_S_contig12543:3338..3574 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12543.2108.1mRNA_Ecto-sp13_S_contig12543.2108.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig12543 3329..3574 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig12543.2108.1 ID=prot_Ecto-sp13_S_contig12543.2108.1|Name=mRNA_Ecto-sp13_S_contig12543.2108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MPWDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLE
FVLIAREHEIMCCTPRAEAASAGNEDSV*
back to top