mRNA_Ecto-sp13_S_contig12543.2108.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12543.2108.1
Unique NamemRNA_Ecto-sp13_S_contig12543.2108.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Match: D7FX69_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX69_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 9.730e-33
Identity = 61/74 (82.43%), Postives = 65/74 (87.84%), Query Frame = 1 
Query:    4 SRMPWDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLEFVLIAREHEIMCCTPRAEAASA 225
            S  PW QDVKTLV AAS ACLTVFGVFAAKEDDD R+WGVFLGVGMLLIG EFVLIAREH+++CC PR EAASA
Sbjct: 1187 SGTPWYQDVKTLVGAASVACLTVFGVFAAKEDDDPRLWGVFLGVGMLLIGAEFVLIAREHKLLCCKPRVEAASA 1260
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Match: D7FJV1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJV1_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.400e-30
Identity = 57/78 (73.08%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    1 GSRMPWDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLEFVLIAREHEIMCCTPRAEAASAGNE 234
            GSR PW QDVKT V AAS  CL VFGVF  +EDDD R+WGVFLG+GMLL+G+EF LIARE++++C TPRAEAASAGNE
Sbjct: 1007 GSRTPWYQDVKTFVGAASLVCLAVFGVFHDEEDDDPRLWGVFLGLGMLLVGVEFGLIAREYKLLCFTPRAEAASAGNE 1084
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Match: A0A6H5JSC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSC0_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 1.850e-30
Identity = 58/78 (74.36%), Postives = 66/78 (84.62%), Query Frame = 1 
Query:    1 GSRMPWDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLEFVLIAREHEIMCCTPRAEAASAGNE 234
            GSR PW QDVKT V AAS ACLTVFGVF  +EDDD  +WGVFLG+GMLL G+EF LIARE++++C TPRAEAASAGNE
Sbjct:  673 GSRTPWYQDVKTFVGAASVACLTVFGVFHDEEDDDPLLWGVFLGLGMLLAGVEFGLIAREYKLLCFTPRAEAASAGNE 750
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Match: D7FX56_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX56_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.920e-30
Identity = 58/74 (78.38%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    4 SRMPWDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLEFVLIAREHEIMCCTPRAEAASA 225
            S  PW QDVKT V AAS ACLTVFGVFAAKEDDD R+WGVFLGVGMLLIG EF LIAREH+++CC PR +AASA
Sbjct: 1094 SGTPWYQDVKTWVGAASVACLTVFGVFAAKEDDDPRLWGVFLGVGMLLIGGEFFLIAREHKLLCCKPRVDAASA 1167
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Match: A0A6H5KNW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNW8_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 4.860e-30
Identity = 54/74 (72.97%), Postives = 64/74 (86.49%), Query Frame = 1 
Query:    4 SRMPWDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLEFVLIAREHEIMCCTPRAEAASA 225
            S  PW QDVKT V AAS ACLTVFGVFA+KED+D R+WGVFLGVGM L+G+EF+LIAREH+++CC PR +AASA
Sbjct:  417 SGTPWYQDVKTFVGAASVACLTVFGVFASKEDEDPRLWGVFLGVGMTLLGVEFLLIAREHKLLCCKPREDAASA 490
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Match: A0A6H5KZE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE2_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 9.330e-27
Identity = 52/80 (65.00%), Postives = 59/80 (73.75%), Query Frame = 1 
Query:    4 SRMPWDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLEFVLIAREHEIMCCTPRAEAASAGNEDSV 243
            S  PW QDVKT V AAS ACLTVFGVF A EDDD R+WGV LG G+L IG EFV+IARE++ +C  PR EAASA    S+
Sbjct:   92 SGTPWYQDVKTWVGAASVACLTVFGVFVANEDDDPRLWGVILGFGVLFIGAEFVVIARENKRLCRKPRVEAASAVQTPSL 171
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Match: A0A6H5JRW5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRW5_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.010e-20
Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:   16 WDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLEFVLIAREHEIMCC-TPRAEAASAGNE 234
            W +D++  V AA   C+TVFGVF AKEDDD R+WG+FLG+G++L  +EFVL+A+ HE  C  +PR EAASAGN+
Sbjct:  756 WVKDLRVQVGAAGALCVTVFGVFYAKEDDDPRLWGLFLGIGLVLAVVEFVLVAKLHERWCFKSPRVEAASAGNQ 829
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Match: A0A6H5KED3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.070e-12
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:    4 SRMPWDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLEFVLI 171
            +R  W +DVK  +  AS ACLTVF  F AK+DDD R+WG FL VGMLLI ++ VLI
Sbjct:  325 TRYVWYEDVKAWILLASEACLTVFTAFVAKDDDDPRLWGSFLAVGMLLILIDAVLI 380
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12543.2108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FX69_ECTSI9.730e-3382.43LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FJV1_ECTSI1.400e-3073.08LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5JSC0_9PHAE1.850e-3074.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FX56_ECTSI1.920e-3078.38LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5KNW8_9PHAE4.860e-3072.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZE2_9PHAE9.330e-2765.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRW5_9PHAE1.010e-2058.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KED3_9PHAE3.070e-1258.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12543contigEcto-sp13_S_contig12543:3329..3574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score131.7
Seed ortholog evalue1.5e-28
Seed eggNOG ortholog2880.D7FX69
Model size246
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
Exons1
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
Cds size237
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462668.9291399-UTR-Ecto-sp13_S_contig12543:3328..33371681462668.9291399-UTR-Ecto-sp13_S_contig12543:3328..3337Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12543 3329..3337 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462668.9397125-CDS-Ecto-sp13_S_contig12543:3337..35741681462668.9397125-CDS-Ecto-sp13_S_contig12543:3337..3574Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12543 3338..3574 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12543.2108.1prot_Ecto-sp13_S_contig12543.2108.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12543 3338..3574 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12543.2108.1

>prot_Ecto-sp13_S_contig12543.2108.1 ID=prot_Ecto-sp13_S_contig12543.2108.1|Name=mRNA_Ecto-sp13_S_contig12543.2108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
MPWDQDVKTLVAAASGACLTVFGVFAAKEDDDARMWGVFLGVGMLLIGLE
FVLIAREHEIMCCTPRAEAASAGNEDSV*
back to top

mRNA from alignment at Ecto-sp13_S_contig12543:3329..3574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12543.2108.1 ID=mRNA_Ecto-sp13_S_contig12543.2108.1|Name=mRNA_Ecto-sp13_S_contig12543.2108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12543:3329..3574+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTCGCGAATGCCGTGGGATCAGGACGTGAAGACGTTGGTAGCCGCAGC
CAGCGGGGCATGCCTCACTGTCTTTGGGGTGTTCGCTGCGAAGGAGGATG
ACGACGCTCGTATGTGGGGGGTATTTCTAGGCGTTGGTATGTTGCTTATC
GGGTTGGAATTTGTTTTAATTGCCAGAGAGCACGAGATTATGTGCTGCAC
ACCAAGAGCAGAGGCGGCAAGCGCTGGAAATGAAGATAGTGTGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12543:3329..3574+

>mRNA_Ecto-sp13_S_contig12543.2108.1 ID=mRNA_Ecto-sp13_S_contig12543.2108.1|Name=mRNA_Ecto-sp13_S_contig12543.2108.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12543:3329..3574+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGTGGGATCAGGACGTGAAGACGTTGGTAGCCGCAGCCAGCGGGGC
ATGCCTCACTGTCTTTGGGGTGTTCGCTGCGAAGGAGGATGACGACGCTC
GTATGTGGGGGGTATTTCTAGGCGTTGGTATGTTGCTTATCGGGTTGGAA
TTTGTTTTAATTGCCAGAGAGCACGAGATTATGTGCTGCACACCAAGAGC
AGAGGCGGCAAGCGCTGGAAATGAAGATAGTGTGTAG
back to top